One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/03/15/compare-matrices_2025-03-15.184101_b80NSA/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2025/03/15/compare-matrices_2025-03-15.184101_b80NSA/compare-matrices.tab

One-to-n matrix alignment; reference matrix: cluster_5_shift4 ; 89 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_5_shift4 (cluster_5)														; cluster_5; m=0 (reference); ncol1=11; shift=4; ncol=15; ----AgAATTATsaa ; Alignment reference a 0 0 0 0 99 26 129 135 15 3 129 4 5 91 78 c 0 0 0 0 7 13 1 0 0 1 3 0 62 9 14 g 0 0 0 0 22 76 3 2 2 2 2 4 55 24 20 t 0 0 0 0 10 23 5 1 121 132 4 130 16 14 26
MA1577.2_shift5 (TLX2)		0.936	0.511	7.178	0.919	0.960	4	39	11	7	4	13.000	1	; cluster_5 versus MA1577.2 (TLX2); m=1/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 13; -----yAATTA---- ; cor=0.936; Ncor=0.511; logoDP=7.178; NsEucl=0.919; NSW=0.960; rcor=4; rNcor=39; rlogoDP=11; rNsEucl=7; rNSW=4; rank_mean=13.000; match_rank=1 a 0 0 0 0 0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 0 0 0 0 c 0 0 0 0 0 7799.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 1112.0 80.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 8156.0 0.0 0.0 7799.0 7799.0 0.0 0 0 0 0
MA1481.2_shift5 (DRGX)		0.926	0.505	5.881	0.917	0.959	5	42	46	8	5	21.200	2	; cluster_5 versus MA1481.2 (DRGX); m=2/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 21.2; -----yAATTA---- ; cor=0.926; Ncor=0.505; logoDP=5.881; NsEucl=0.917; NSW=0.959; rcor=5; rNcor=42; rlogoDP=46; rNsEucl=8; rNSW=5; rank_mean=21.200; match_rank=2 a 0 0 0 0 0 1079.0 14867.0 14867.0 0.0 0.0 14867.0 0 0 0 0 c 0 0 0 0 0 5997.0 501.0 0.0 0.0 813.0 17.0 0 0 0 0 g 0 0 0 0 0 1111.0 2037.0 0.0 0.0 209.0 962.0 0 0 0 0 t 0 0 0 0 0 8870.0 0.0 0.0 14867.0 14867.0 144.0 0 0 0 0
MA0718.2_shift5 (RAX)		0.921	0.502	5.859	0.914	0.955	6	44	48	13	9	24.000	3	; cluster_5 versus MA0718.2 (RAX); m=3/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 24; -----yAATTA---- ; cor=0.921; Ncor=0.502; logoDP=5.859; NsEucl=0.914; NSW=0.955; rcor=6; rNcor=44; rlogoDP=48; rNsEucl=13; rNSW=9; rank_mean=24.000; match_rank=3 a 0 0 0 0 0 214.0 2412.0 2412.0 123.0 71.0 2412.0 0 0 0 0 c 0 0 0 0 0 1281.0 17.0 38.0 0.0 71.0 0.0 0 0 0 0 g 0 0 0 0 0 25.0 3.0 12.0 0.0 49.0 20.0 0 0 0 0 t 0 0 0 0 0 1131.0 40.0 24.0 2412.0 2412.0 126.0 0 0 0 0
MA0654.2_shift5 (ISX)		0.913	0.498	6.688	0.906	0.947	12	52	21	25	22	26.400	4	; cluster_5 versus MA0654.2 (ISX); m=4/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 26.4; -----yAATTA---- ; cor=0.913; Ncor=0.498; logoDP=6.688; NsEucl=0.906; NSW=0.947; rcor=12; rNcor=52; rlogoDP=21; rNsEucl=25; rNSW=22; rank_mean=26.400; match_rank=4 a 0 0 0 0 0 10.0 2065.0 2065.0 0.0 0.0 2065.0 0 0 0 0 c 0 0 0 0 0 1003.0 48.0 16.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 5.0 0.0 0.0 24.0 0.0 0 0 0 0 t 0 0 0 0 0 1061.0 24.0 10.0 2065.0 2065.0 49.0 0 0 0 0
MA0894.2_rc_shift5 (HESX1_rc)		0.916	0.500	5.907	0.908	0.949	9	49	45	20	16	27.800	5	; cluster_5 versus MA0894.2_rc (HESX1_rc); m=5/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 27.8; -----yAATTA---- ; cor=0.916; Ncor=0.500; logoDP=5.907; NsEucl=0.908; NSW=0.949; rcor=9; rNcor=49; rlogoDP=45; rNsEucl=20; rNSW=16; rank_mean=27.800; match_rank=5 a 0 0 0 0 0 97.0 4072.0 4072.0 0.0 31.0 4072.0 0 0 0 0 c 0 0 0 0 0 2180.0 0.0 15.0 9.0 53.0 34.0 0 0 0 0 g 0 0 0 0 0 38.0 15.0 0.0 7.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 1892.0 0.0 0.0 4072.0 4072.0 187.0 0 0 0 0
MA0720.2_shift5 (Shox2)		0.915	0.499	5.723	0.911	0.952	10	50	52	17	13	28.400	6	; cluster_5 versus MA0720.2 (Shox2); m=6/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 28.4; -----yAATTA---- ; cor=0.915; Ncor=0.499; logoDP=5.723; NsEucl=0.911; NSW=0.952; rcor=10; rNcor=50; rlogoDP=52; rNsEucl=17; rNSW=13; rank_mean=28.400; match_rank=6 a 0 0 0 0 0 979.0 18179.0 18179.0 29.0 597.0 18179.0 0 0 0 0 c 0 0 0 0 0 9027.0 626.0 138.0 12.0 545.0 193.0 0 0 0 0 g 0 0 0 0 0 228.0 426.0 3.0 0.0 870.0 36.0 0 0 0 0 t 0 0 0 0 0 9152.0 766.0 79.0 18179.0 18179.0 895.0 0 0 0 0
MA0890.2_shift5 (GBX2)		0.911	0.497	6.185	0.907	0.948	14	54	34	23	19	28.800	7	; cluster_5 versus MA0890.2 (GBX2); m=7/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 28.8; -----yAATTA---- ; cor=0.911; Ncor=0.497; logoDP=6.185; NsEucl=0.907; NSW=0.948; rcor=14; rNcor=54; rlogoDP=34; rNsEucl=23; rNSW=19; rank_mean=28.800; match_rank=7 a 0 0 0 0 0 699.0 27366.0 27366.0 0.0 318.0 27366.0 0 0 0 0 c 0 0 0 0 0 15511.0 570.0 250.0 61.0 570.0 73.0 0 0 0 0 g 0 0 0 0 0 106.0 1113.0 114.0 65.0 673.0 30.0 0 0 0 0 t 0 0 0 0 0 11855.0 227.0 25.0 27366.0 27366.0 650.0 0 0 0 0
MA0716.2_shift5 (PRRX1)		0.920	0.502	5.069	0.916	0.957	7	45	78	9	6	29.000	8	; cluster_5 versus MA0716.2 (PRRX1); m=8/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 29; -----yAATTA---- ; cor=0.920; Ncor=0.502; logoDP=5.069; NsEucl=0.916; NSW=0.957; rcor=7; rNcor=45; rlogoDP=78; rNsEucl=9; rNSW=6; rank_mean=29.000; match_rank=8 a 0 0 0 0 0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 0 0 0 0 c 0 0 0 0 0 11122.0 1088.0 503.0 3.0 2302.0 644.0 0 0 0 0 g 0 0 0 0 0 1121.0 1776.0 202.0 0.0 1004.0 136.0 0 0 0 0 t 0 0 0 0 0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 0 0 0 0
MA0666.3_shift5 (MSX1)		0.902	0.492	6.414	0.901	0.941	21	69	26	29	26	34.200	9	; cluster_5 versus MA0666.3 (MSX1); m=9/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 34.2; -----yAATTA---- ; cor=0.902; Ncor=0.492; logoDP=6.414; NsEucl=0.901; NSW=0.941; rcor=21; rNcor=69; rlogoDP=26; rNsEucl=29; rNSW=26; rank_mean=34.200; match_rank=9 a 0 0 0 0 0 227.0 5064.0 5064.0 0.0 0.0 5064.0 0 0 0 0 c 0 0 0 0 0 5064.0 125.0 42.0 0.0 280.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 146.0 0.0 0.0 0.0 159.0 0 0 0 0 t 0 0 0 0 0 2415.0 0.0 0.0 5064.0 5064.0 0.0 0 0 0 0
MA0709.2_shift5 (Msx3)		0.902	0.492	6.180	0.902	0.942	20	68	35	28	25	35.200	10	; cluster_5 versus MA0709.2 (Msx3); m=10/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 35.2; -----yAATTA---- ; cor=0.902; Ncor=0.492; logoDP=6.180; NsEucl=0.902; NSW=0.942; rcor=20; rNcor=68; rlogoDP=35; rNsEucl=28; rNSW=25; rank_mean=35.200; match_rank=10 a 0 0 0 0 0 312.0 8380.0 8380.0 0.0 121.0 8380.0 0 0 0 0 c 0 0 0 0 0 5798.0 160.0 89.0 0.0 215.0 59.0 0 0 0 0 g 0 0 0 0 0 29.0 237.0 38.0 0.0 105.0 88.0 0 0 0 0 t 0 0 0 0 0 2582.0 94.0 5.0 8380.0 8380.0 213.0 0 0 0 0
MA0027.3_shift5 (EN1)		0.904	0.493	5.678	0.906	0.946	19	65	55	26	23	37.600	12	; cluster_5 versus MA0027.3 (EN1); m=11/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 37.6; -----yAATTA---- ; cor=0.904; Ncor=0.493; logoDP=5.678; NsEucl=0.906; NSW=0.946; rcor=19; rNcor=65; rlogoDP=55; rNsEucl=26; rNSW=23; rank_mean=37.600; match_rank=12 a 0 0 0 0 0 104.0 2891.0 2891.0 0.0 57.0 2891.0 0 0 0 0 c 0 0 0 0 0 1328.0 99.0 28.0 0.0 483.0 0.0 0 0 0 0 g 0 0 0 0 0 5.0 71.0 0.0 0.0 162.0 30.0 0 0 0 0 t 0 0 0 0 0 1562.0 0.0 0.0 2891.0 2891.0 132.0 0 0 0 0
MA0630.2_rc_shift5 (SHOX_rc)		0.918	0.501	3.881	0.915	0.957	8	46	122	10	7	38.600	13	; cluster_5 versus MA0630.2_rc (SHOX_rc); m=12/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 38.6; -----yAATTA---- ; cor=0.918; Ncor=0.501; logoDP=3.881; NsEucl=0.915; NSW=0.957; rcor=8; rNcor=46; rlogoDP=122; rNsEucl=10; rNSW=7; rank_mean=38.600; match_rank=13 a 0 0 0 0 0 111.0 768.0 943.0 2.0 45.0 886.0 0 0 0 0 c 0 0 0 0 0 424.0 84.0 27.0 5.0 55.0 9.0 0 0 0 0 g 0 0 0 0 0 48.0 50.0 15.0 2.0 48.0 30.0 0 0 0 0 t 0 0 0 0 0 416.0 98.0 15.0 991.0 852.0 74.0 0 0 0 0
MA0721.2_shift5 (UNCX)		0.915	0.499	4.078	0.914	0.955	11	51	113	12	8	39.000	14	; cluster_5 versus MA0721.2 (UNCX); m=13/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 39; -----yAATTA---- ; cor=0.915; Ncor=0.499; logoDP=4.078; NsEucl=0.914; NSW=0.955; rcor=11; rNcor=51; rlogoDP=113; rNsEucl=12; rNSW=8; rank_mean=39.000; match_rank=14 a 0 0 0 0 0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 0 0 0 0 c 0 0 0 0 0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 0 0 0 0 g 0 0 0 0 0 2086.0 4582.0 420.0 117.0 1782.0 731.0 0 0 0 0 t 0 0 0 0 0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 0 0 0 0
MA0882.2_shift5 (DLX6)		0.905	0.494	5.017	0.908	0.949	18	64	81	18	14	39.000	15	; cluster_5 versus MA0882.2 (DLX6); m=14/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 39; -----yAATTA---- ; cor=0.905; Ncor=0.494; logoDP=5.017; NsEucl=0.908; NSW=0.949; rcor=18; rNcor=64; rlogoDP=81; rNsEucl=18; rNSW=14; rank_mean=39.000; match_rank=15 a 0 0 0 0 0 137.0 2623.0 2623.0 12.0 48.0 2623.0 0 0 0 0 c 0 0 0 0 0 1410.0 273.0 124.0 0.0 140.0 30.0 0 0 0 0 g 0 0 0 0 0 21.0 143.0 0.0 0.0 68.0 16.0 0 0 0 0 t 0 0 0 0 0 1212.0 184.0 56.0 2623.0 2623.0 193.0 0 0 0 0
MA0634.2_shift5 (ALX3)		0.912	0.497	4.157	0.912	0.954	13	53	107	14	10	39.400	16	; cluster_5 versus MA0634.2 (ALX3); m=15/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 39.4; -----yAATTA---- ; cor=0.912; Ncor=0.497; logoDP=4.157; NsEucl=0.912; NSW=0.954; rcor=13; rNcor=53; rlogoDP=107; rNsEucl=14; rNSW=10; rank_mean=39.400; match_rank=16 a 0 0 0 0 0 794.0 7877.0 7877.0 76.0 697.0 7877.0 0 0 0 0 c 0 0 0 0 0 3367.0 506.0 317.0 72.0 729.0 449.0 0 0 0 0 g 0 0 0 0 0 345.0 885.0 141.0 8.0 239.0 87.0 0 0 0 0 t 0 0 0 0 0 4510.0 629.0 231.0 7877.0 7877.0 977.0 0 0 0 0
MA0612.3_shift5 (EMX1)		0.893	0.487	6.346	0.897	0.936	29	79	27	35	33	40.600	17	; cluster_5 versus MA0612.3 (EMX1); m=16/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 40.6; -----TAATTA---- ; cor=0.893; Ncor=0.487; logoDP=6.346; NsEucl=0.897; NSW=0.936; rcor=29; rNcor=79; rlogoDP=27; rNsEucl=35; rNSW=33; rank_mean=40.600; match_rank=17 a 0 0 0 0 0 19.0 9544.0 9544.0 0.0 0.0 9544.0 0 0 0 0 c 0 0 0 0 0 2263.0 1235.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 933.0 0.0 0 0 0 0 t 0 0 0 0 0 7281.0 0.0 0.0 9544.0 9544.0 0.0 0 0 0 0
MA0708.3_shift5 (MSX2)		0.895	0.488	6.072	0.899	0.939	28	78	39	30	29	40.800	18	; cluster_5 versus MA0708.3 (MSX2); m=17/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 40.8; -----YAATTA---- ; cor=0.895; Ncor=0.488; logoDP=6.072; NsEucl=0.899; NSW=0.939; rcor=28; rNcor=78; rlogoDP=39; rNsEucl=30; rNSW=29; rank_mean=40.800; match_rank=18 a 0 0 0 0 0 220.0 6353.0 6353.0 0.0 62.0 6353.0 0 0 0 0 c 0 0 0 0 0 6353.0 175.0 112.0 0.0 600.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 259.0 0.0 0.0 0.0 243.0 0 0 0 0 t 0 0 0 0 0 2737.0 0.0 0.0 6353.0 6353.0 0.0 0 0 0 0
MA0717.2_shift5 (RAX2)		0.910	0.496	4.084	0.911	0.953	15	57	112	15	11	42.000	19	; cluster_5 versus MA0717.2 (RAX2); m=18/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 42; -----yAATTA---- ; cor=0.910; Ncor=0.496; logoDP=4.084; NsEucl=0.911; NSW=0.953; rcor=15; rNcor=57; rlogoDP=112; rNsEucl=15; rNSW=11; rank_mean=42.000; match_rank=19 a 0 0 0 0 0 3558.0 38860.0 38860.0 270.0 2167.0 38860.0 0 0 0 0 c 0 0 0 0 0 19645.0 3060.0 1523.0 738.0 4232.0 2644.0 0 0 0 0 g 0 0 0 0 0 1688.0 4490.0 757.0 125.0 2513.0 360.0 0 0 0 0 t 0 0 0 0 0 19215.0 2421.0 1030.0 38860.0 38860.0 4258.0 0 0 0 0
MA0662.2_shift5 (MIXL1)		0.908	0.496	4.131	0.911	0.952	16	60	108	16	12	42.400	20	; cluster_5 versus MA0662.2 (MIXL1); m=19/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 42.4; -----yAATTA---- ; cor=0.908; Ncor=0.496; logoDP=4.131; NsEucl=0.911; NSW=0.952; rcor=16; rNcor=60; rlogoDP=108; rNsEucl=16; rNSW=12; rank_mean=42.400; match_rank=20 a 0 0 0 0 0 2635.0 27042.0 27042.0 0.0 1385.0 27042.0 0 0 0 0 c 0 0 0 0 0 11639.0 1911.0 662.0 510.0 4270.0 1903.0 0 0 0 0 g 0 0 0 0 0 1245.0 3660.0 556.0 181.0 2031.0 115.0 0 0 0 0 t 0 0 0 0 0 15403.0 1038.0 736.0 27042.0 27042.0 2895.0 0 0 0 0
MA0886.2_shift5 (EMX2)		0.890	0.486	6.106	0.896	0.935	31	82	38	37	35	44.600	21	; cluster_5 versus MA0886.2 (EMX2); m=20/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 44.6; -----TAATTA---- ; cor=0.890; Ncor=0.486; logoDP=6.106; NsEucl=0.896; NSW=0.935; rcor=31; rNcor=82; rlogoDP=38; rNsEucl=37; rNSW=35; rank_mean=44.600; match_rank=21 a 0 0 0 0 0 834.0 37262.0 37262.0 0.0 0.0 37262.0 0 0 0 0 c 0 0 0 0 0 7761.0 4938.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 678.0 0.0 0.0 4025.0 0.0 0 0 0 0 t 0 0 0 0 0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 0 0 0 0
MA1519.2_shift4 (LHX5)		0.825	0.525	6.825	0.883	0.904	58	31	17	55	65	45.200	22	; cluster_5 versus MA1519.2 (LHX5); m=21/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 45.2; ----sYAATTA---- ; cor=0.825; Ncor=0.525; logoDP=6.825; NsEucl=0.883; NSW=0.904; rcor=58; rNcor=31; rlogoDP=17; rNsEucl=55; rNSW=65; rank_mean=45.200; match_rank=22 a 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 0 0 0 0 c 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 0 0 0 0 g 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 0 0 0 0 t 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0 0 0 0 0
MA0132.3_shift5 (PDX1)		0.883	0.481	6.199	0.894	0.933	32	87	33	38	36	45.200	23	; cluster_5 versus MA0132.3 (PDX1); m=22/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 45.2; -----ymATTA---- ; cor=0.883; Ncor=0.481; logoDP=6.199; NsEucl=0.894; NSW=0.933; rcor=32; rNcor=87; rlogoDP=33; rNsEucl=38; rNSW=36; rank_mean=45.200; match_rank=23 a 0 0 0 0 0 292.0 4839.0 7130.0 0.0 0.0 7130.0 0 0 0 0 c 0 0 0 0 0 2469.0 2291.0 45.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 185.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 4661.0 78.0 0.0 7130.0 7130.0 0.0 0 0 0 0
MA0889.2_shift4 (GBX1)		0.824	0.524	6.482	0.884	0.905	59	33	24	51	63	46.000	25	; cluster_5 versus MA0889.2 (GBX1); m=23/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 46; ----syAATTA---- ; cor=0.824; Ncor=0.524; logoDP=6.482; NsEucl=0.884; NSW=0.905; rcor=59; rNcor=33; rlogoDP=24; rNsEucl=51; rNSW=63; rank_mean=46.000; match_rank=25 a 0 0 0 0 1674.0 243.0 27339.0 27339.0 45.0 312.0 27339.0 0 0 0 0 c 0 0 0 0 14978.0 13543.0 589.0 172.0 128.0 438.0 50.0 0 0 0 0 g 0 0 0 0 6964.0 15.0 758.0 29.0 1.0 246.0 8.0 0 0 0 0 t 0 0 0 0 3723.0 13796.0 157.0 23.0 27339.0 27339.0 321.0 0 0 0 0
MA0075.4_shift4 (PRRX2)		0.821	0.523	6.956	0.881	0.901	60	34	13	65	70	48.400	26	; cluster_5 versus MA0075.4 (PRRX2); m=24/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 48.4; ----cyAATTA---- ; cor=0.821; Ncor=0.523; logoDP=6.956; NsEucl=0.881; NSW=0.901; rcor=60; rNcor=34; rlogoDP=13; rNsEucl=65; rNSW=70; rank_mean=48.400; match_rank=26 a 0 0 0 0 778.0 122.0 6720.0 6720.0 0.0 0.0 6720.0 0 0 0 0 c 0 0 0 0 6720.0 2008.0 29.0 0.0 0.0 0.0 1.0 0 0 0 0 g 0 0 0 0 1613.0 131.0 3.0 0.0 0.0 0.0 399.0 0 0 0 0 t 0 0 0 0 1933.0 4711.0 0.0 0.0 6720.0 6720.0 0.0 0 0 0 0
MA0125.2_rc_shift5 (Nobox_rc)		0.898	0.490	4.665	0.903	0.944	26	76	90	27	24	48.600	27	; cluster_5 versus MA0125.2_rc (Nobox_rc); m=25/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 48.6; -----yAATTA---- ; cor=0.898; Ncor=0.490; logoDP=4.665; NsEucl=0.903; NSW=0.944; rcor=26; rNcor=76; rlogoDP=90; rNsEucl=27; rNSW=24; rank_mean=48.600; match_rank=27 a 0 0 0 0 0 1.0 32.0 34.0 0.0 2.0 37.0 0 0 0 0 c 0 0 0 0 0 22.0 4.0 2.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 t 0 0 0 0 0 15.0 2.0 1.0 38.0 36.0 0.0 0 0 0 0
MA0880.2_shift5 (Dlx3)		0.902	0.492	4.041	0.908	0.949	23	71	115	19	15	48.600	28	; cluster_5 versus MA0880.2 (Dlx3); m=26/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 48.6; -----yAATTA---- ; cor=0.902; Ncor=0.492; logoDP=4.041; NsEucl=0.908; NSW=0.949; rcor=23; rNcor=71; rlogoDP=115; rNsEucl=19; rNSW=15; rank_mean=48.600; match_rank=28 a 0 0 0 0 0 572.0 7323.0 7323.0 173.0 399.0 7323.0 0 0 0 0 c 0 0 0 0 0 4133.0 995.0 536.0 66.0 535.0 202.0 0 0 0 0 g 0 0 0 0 0 164.0 587.0 62.0 60.0 452.0 101.0 0 0 0 0 t 0 0 0 0 0 3190.0 643.0 299.0 7323.0 7323.0 691.0 0 0 0 0
MA0881.2_shift5 (Dlx4)		0.900	0.491	4.390	0.906	0.947	25	74	103	24	20	49.200	30	; cluster_5 versus MA0881.2 (Dlx4); m=27/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 49.2; -----yAATTA---- ; cor=0.900; Ncor=0.491; logoDP=4.390; NsEucl=0.906; NSW=0.947; rcor=25; rNcor=74; rlogoDP=103; rNsEucl=24; rNSW=20; rank_mean=49.200; match_rank=30 a 0 0 0 0 0 724.0 12054.0 12054.0 88.0 440.0 12054.0 0 0 0 0 c 0 0 0 0 0 6841.0 1500.0 744.0 85.0 868.0 316.0 0 0 0 0 g 0 0 0 0 0 145.0 739.0 55.0 38.0 542.0 134.0 0 0 0 0 t 0 0 0 0 0 5213.0 883.0 499.0 12054.0 12054.0 1127.0 0 0 0 0
MA0699.2_shift5 (LBX2)		0.901	0.492	3.991	0.907	0.949	24	72	119	21	17	50.600	32	; cluster_5 versus MA0699.2 (LBX2); m=28/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 50.6; -----yAATTA---- ; cor=0.901; Ncor=0.492; logoDP=3.991; NsEucl=0.907; NSW=0.949; rcor=24; rNcor=72; rlogoDP=119; rNsEucl=21; rNSW=17; rank_mean=50.600; match_rank=32 a 0 0 0 0 0 157.0 2996.0 2996.0 0.0 150.0 2996.0 0 0 0 0 c 0 0 0 0 0 1634.0 338.0 290.0 29.0 258.0 34.0 0 0 0 0 g 0 0 0 0 0 109.0 325.0 130.0 118.0 293.0 106.0 0 0 0 0 t 0 0 0 0 0 1362.0 57.0 89.0 2996.0 2996.0 148.0 0 0 0 0
MA2333.1_rc_shift3 (ZNF35_rc)		0.965	0.482	1.287	0.946	0.983	2	85	172	2	2	52.600	35	; cluster_5 versus MA2333.1_rc (ZNF35_rc); m=29/88; ncol2=7; w=-1; offset=-1; strand=R; shift=3; score= 52.6; ---TAGAATT----- ; cor=0.965; Ncor=0.482; logoDP=1.287; NsEucl=0.946; NSW=0.983; rcor=2; rNcor=85; rlogoDP=172; rNsEucl=2; rNSW=2; rank_mean=52.600; match_rank=35 a 0 0 0 494.0 14100.0 780.0 13163.0 13218.0 1124.0 871.0 0 0 0 0 0 c 0 0 0 460.0 172.0 898.0 626.0 561.0 693.0 554.0 0 0 0 0 0 g 0 0 0 385.0 450.0 12495.0 762.0 655.0 690.0 834.0 0 0 0 0 0 t 0 0 0 13931.0 548.0 1097.0 719.0 836.0 12763.0 13011.0 0 0 0 0 0
MA0644.3_shift4 (ESX1)		0.813	0.517	6.049	0.882	0.902	63	36	41	60	69	53.800	36	; cluster_5 versus MA0644.3 (ESX1); m=30/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 53.8; ----yyAATTA---- ; cor=0.813; Ncor=0.517; logoDP=6.049; NsEucl=0.882; NSW=0.902; rcor=63; rNcor=36; rlogoDP=41; rNsEucl=60; rNSW=69; rank_mean=53.800; match_rank=36 a 0 0 0 0 1070.0 589.0 19670.0 19670.0 0.0 47.0 19670.0 0 0 0 0 c 0 0 0 0 11980.0 7595.0 634.0 95.0 0.0 1009.0 0.0 0 0 0 0 g 0 0 0 0 2110.0 0.0 821.0 0.0 0.0 225.0 925.0 0 0 0 0 t 0 0 0 0 7690.0 12075.0 181.0 0.0 19670.0 19670.0 557.0 0 0 0 0
MA0879.3_shift5 (DLX1)		0.880	0.480	4.842	0.897	0.936	34	91	86	32	31	54.800	37	; cluster_5 versus MA0879.3 (DLX1); m=31/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 54.8; -----yAATTA---- ; cor=0.880; Ncor=0.480; logoDP=4.842; NsEucl=0.897; NSW=0.936; rcor=34; rNcor=91; rlogoDP=86; rNsEucl=32; rNSW=31; rank_mean=54.800; match_rank=37 a 0 0 0 0 0 265.0 6231.0 6231.0 0.0 0.0 6231.0 0 0 0 0 c 0 0 0 0 0 4059.0 1212.0 222.0 0.0 639.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 954.0 0.0 0.0 155.0 168.0 0 0 0 0 t 0 0 0 0 0 2171.0 540.0 0.0 6231.0 6231.0 614.0 0 0 0 0
MA0700.3_shift5 (LHX2)		0.867	0.473	6.059	0.883	0.918	40	100	40	53	48	56.200	39	; cluster_5 versus MA0700.3 (LHX2); m=32/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 56.2; -----CAATTA---- ; cor=0.867; Ncor=0.473; logoDP=6.059; NsEucl=0.883; NSW=0.918; rcor=40; rNcor=100; rlogoDP=40; rNsEucl=53; rNSW=48; rank_mean=56.200; match_rank=39 a 0 0 0 0 0 44.0 5790.0 6022.0 129.0 67.0 6275.0 0 0 0 0 c 0 0 0 0 0 5612.0 71.0 101.0 58.0 5.0 13.0 0 0 0 0 g 0 0 0 0 0 37.0 52.0 77.0 64.0 5.0 6.0 0 0 0 0 t 0 0 0 0 0 640.0 420.0 133.0 6082.0 6256.0 39.0 0 0 0 0
MA0903.2_shift5 (HOXB3)		0.878	0.479	4.551	0.897	0.937	36	94	97	31	30	57.600	40	; cluster_5 versus MA0903.2 (HOXB3); m=33/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 57.6; -----ymATTA---- ; cor=0.878; Ncor=0.479; logoDP=4.551; NsEucl=0.897; NSW=0.937; rcor=36; rNcor=94; rlogoDP=97; rNsEucl=31; rNSW=30; rank_mean=57.600; match_rank=40 a 0 0 0 0 0 1744.0 7793.0 12899.0 0.0 441.0 12899.0 0 0 0 0 c 0 0 0 0 0 4979.0 5106.0 545.0 150.0 839.0 119.0 0 0 0 0 g 0 0 0 0 0 604.0 838.0 640.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 7920.0 697.0 242.0 12899.0 12899.0 574.0 0 0 0 0
MA0704.2_shift5 (Lhx4)		0.880	0.480	4.612	0.897	0.936	35	93	95	34	32	57.800	41	; cluster_5 versus MA0704.2 (Lhx4); m=34/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 57.8; -----TAATTA---- ; cor=0.880; Ncor=0.480; logoDP=4.612; NsEucl=0.897; NSW=0.936; rcor=35; rNcor=93; rlogoDP=95; rNsEucl=34; rNSW=32; rank_mean=57.800; match_rank=41 a 0 0 0 0 0 217.0 2896.0 2896.0 0.0 0.0 2896.0 0 0 0 0 c 0 0 0 0 0 912.0 428.0 0.0 0.0 446.0 39.0 0 0 0 0 g 0 0 0 0 0 0.0 309.0 0.0 0.0 57.0 316.0 0 0 0 0 t 0 0 0 0 0 2896.0 255.0 155.0 2896.0 2896.0 135.0 0 0 0 0
MA0902.3_shift5 (HOXB2)		0.864	0.471	5.523	0.889	0.926	41	104	61	45	42	58.600	42	; cluster_5 versus MA0902.3 (HOXB2); m=35/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 58.6; -----ymATTA---- ; cor=0.864; Ncor=0.471; logoDP=5.523; NsEucl=0.889; NSW=0.926; rcor=41; rNcor=104; rlogoDP=61; rNsEucl=45; rNSW=42; rank_mean=58.600; match_rank=42 a 0 0 0 0 0 51.0 6827.0 6827.0 0.0 0.0 6827.0 0 0 0 0 c 0 0 0 0 0 2834.0 3276.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 199.0 0.0 0.0 1876.0 0.0 0 0 0 0 t 0 0 0 0 0 3993.0 0.0 0.0 6827.0 6827.0 0.0 0 0 0 0
MA0628.2_shift5 (POU6F1)		0.863	0.471	5.201	0.884	0.919	42	105	73	49	45	62.800	45	; cluster_5 versus MA0628.2 (POU6F1); m=36/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 62.8; -----TAATTA---- ; cor=0.863; Ncor=0.471; logoDP=5.201; NsEucl=0.884; NSW=0.919; rcor=42; rNcor=105; rlogoDP=73; rNsEucl=49; rNSW=45; rank_mean=62.800; match_rank=45 a 0 0 0 0 0 32.0 905.0 938.0 14.0 18.0 950.0 0 0 0 0 c 0 0 0 0 0 10.0 70.0 34.0 14.0 8.0 8.0 0 0 0 0 g 0 0 0 0 0 8.0 8.0 14.0 34.0 70.0 10.0 0 0 0 0 t 0 0 0 0 0 950.0 18.0 14.0 938.0 905.0 32.0 0 0 0 0
MA0701.3_shift4 (LHX9)		0.797	0.507	6.477	0.874	0.889	73	40	25	90	89	63.400	46	; cluster_5 versus MA0701.3 (LHX9); m=37/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 63.4; ----CyAATTA---- ; cor=0.797; Ncor=0.507; logoDP=6.477; NsEucl=0.874; NSW=0.889; rcor=73; rNcor=40; rlogoDP=25; rNsEucl=90; rNSW=89; rank_mean=63.400; match_rank=46 a 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 0 0 0 0 c 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 0 0 0 0 t 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0 0 0 0 0
MA0875.2_shift5 (BARX1)		0.852	0.465	5.607	0.884	0.919	47	116	59	50	46	63.600	47	; cluster_5 versus MA0875.2 (BARX1); m=38/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 63.6; -----cmATTA---- ; cor=0.852; Ncor=0.465; logoDP=5.607; NsEucl=0.884; NSW=0.919; rcor=47; rNcor=116; rlogoDP=59; rNsEucl=50; rNSW=46; rank_mean=63.600; match_rank=47 a 0 0 0 0 0 590.0 3339.0 6805.0 0.0 0.0 6805.0 0 0 0 0 c 0 0 0 0 0 5138.0 1992.0 207.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 246.0 1386.0 192.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 1667.0 87.0 0.0 6805.0 6805.0 0.0 0 0 0 0
MA0887.2_shift5 (EVX1)		0.859	0.469	4.452	0.890	0.927	45	108	101	43	40	67.400	49	; cluster_5 versus MA0887.2 (EVX1); m=39/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 67.4; -----taATTA---- ; cor=0.859; Ncor=0.469; logoDP=4.452; NsEucl=0.890; NSW=0.927; rcor=45; rNcor=108; rlogoDP=101; rNsEucl=43; rNSW=40; rank_mean=67.400; match_rank=49 a 0 0 0 0 0 1196.0 3899.0 7894.0 0.0 232.0 7894.0 0 0 0 0 c 0 0 0 0 0 2343.0 1752.0 29.0 67.0 463.0 14.0 0 0 0 0 g 0 0 0 0 0 269.0 1885.0 236.0 267.0 171.0 725.0 0 0 0 0 t 0 0 0 0 0 7894.0 358.0 0.0 7894.0 7894.0 172.0 0 0 0 0
MA0888.2_shift5 (EVX2)		0.859	0.469	4.534	0.889	0.927	46	109	98	44	41	67.600	50	; cluster_5 versus MA0888.2 (EVX2); m=40/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 67.6; -----TaATTA---- ; cor=0.859; Ncor=0.469; logoDP=4.534; NsEucl=0.889; NSW=0.927; rcor=46; rNcor=109; rlogoDP=98; rNsEucl=44; rNSW=41; rank_mean=67.600; match_rank=50 a 0 0 0 0 0 2541.0 10108.0 20419.0 5.0 303.0 20419.0 0 0 0 0 c 0 0 0 0 0 5669.0 5018.0 156.0 166.0 863.0 0.0 0 0 0 0 g 0 0 0 0 0 969.0 4541.0 881.0 702.0 445.0 1559.0 0 0 0 0 t 0 0 0 0 0 20419.0 752.0 0.0 20419.0 20419.0 446.0 0 0 0 0
MA0892.2_shift5 (GSX1)		0.875	0.477	3.363	0.896	0.936	37	95	141	36	34	68.600	51	; cluster_5 versus MA0892.2 (GSX1); m=41/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 68.6; -----ymATTA---- ; cor=0.875; Ncor=0.477; logoDP=3.363; NsEucl=0.896; NSW=0.936; rcor=37; rNcor=95; rlogoDP=141; rNsEucl=36; rNSW=34; rank_mean=68.600; match_rank=51 a 0 0 0 0 0 124.0 781.0 1183.0 90.0 106.0 1183.0 0 0 0 0 c 0 0 0 0 0 450.0 402.0 106.0 79.0 106.0 0.0 0 0 0 0 g 0 0 0 0 0 48.0 60.0 123.0 3.0 0.0 9.0 0 0 0 0 t 0 0 0 0 0 733.0 177.0 50.0 1183.0 1183.0 103.0 0 0 0 0
MA0876.2_shift5 (BSX)		0.846	0.461	5.163	0.883	0.918	50	123	75	52	47	69.400		; cluster_5 versus MA0876.2 (BSX); m=42/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 69.4; -----ymATTA---- ; cor=0.846; Ncor=0.461; logoDP=5.163; NsEucl=0.883; NSW=0.918; rcor=50; rNcor=123; rlogoDP=75; rNsEucl=52; rNSW=47; rank_mean=69.400; match_rank= a 0 0 0 0 0 688.0 4036.0 8832.0 0.0 96.0 8832.0 0 0 0 0 c 0 0 0 0 0 5585.0 2483.0 194.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 103.0 2197.0 1078.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 3247.0 116.0 66.0 8832.0 8832.0 0.0 0 0 0 0
MA0900.3_shift5 (HOXA2)		0.847	0.462	6.205	0.875	0.907	49	120	32	85	61	69.400		; cluster_5 versus MA0900.3 (HOXA2); m=43/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 69.4; -----TMATTA---- ; cor=0.847; Ncor=0.462; logoDP=6.205; NsEucl=0.875; NSW=0.907; rcor=49; rNcor=120; rlogoDP=32; rNsEucl=85; rNSW=61; rank_mean=69.400; match_rank= a 0 0 0 0 0 0.0 39674.0 56949.0 0.0 0.0 56949.0 0 0 0 0 c 0 0 0 0 0 3636.0 17275.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 290.0 0.0 0.0 0.0 2052.0 0 0 0 0 t 0 0 0 0 0 56949.0 0.0 0.0 56949.0 56949.0 0.0 0 0 0 0
MA0675.2_shift5 (NKX6-2)		0.861	0.470	4.011	0.891	0.929	44	107	117	41	39	69.600		; cluster_5 versus MA0675.2 (NKX6-2); m=44/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 69.6; -----ymATTA---- ; cor=0.861; Ncor=0.470; logoDP=4.011; NsEucl=0.891; NSW=0.929; rcor=44; rNcor=107; rlogoDP=117; rNsEucl=41; rNSW=39; rank_mean=69.600; match_rank= a 0 0 0 0 0 1172.0 11354.0 18935.0 584.0 2468.0 18935.0 0 0 0 0 c 0 0 0 0 0 7831.0 7581.0 310.0 0.0 2233.0 370.0 0 0 0 0 g 0 0 0 0 0 814.0 1053.0 191.0 0.0 551.0 775.0 0 0 0 0 t 0 0 0 0 0 11104.0 2582.0 546.0 18935.0 18935.0 678.0 0 0 0 0
MA0642.3_shift4 (EN2)		0.789	0.502	5.228	0.878	0.896	83	43	72	76	76	70.000		; cluster_5 versus MA0642.3 (EN2); m=45/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 70; ----syAATTA---- ; cor=0.789; Ncor=0.502; logoDP=5.228; NsEucl=0.878; NSW=0.896; rcor=83; rNcor=43; rlogoDP=72; rNsEucl=76; rNSW=76; rank_mean=70.000; match_rank= a 0 0 0 0 115.0 0.0 898.0 898.0 0.0 28.0 898.0 0 0 0 0 c 0 0 0 0 898.0 577.0 198.0 0.0 0.0 0.0 4.0 0 0 0 0 g 0 0 0 0 474.0 0.0 44.0 31.0 0.0 0.0 168.0 0 0 0 0 t 0 0 0 0 313.0 321.0 103.0 0.0 898.0 898.0 0.0 0 0 0 0
MA0723.3_shift5 (VAX2)		0.863	0.471	3.825	0.892	0.930	43	106	126	40	38	70.600		; cluster_5 versus MA0723.3 (VAX2); m=46/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 70.6; -----yaATTA---- ; cor=0.863; Ncor=0.471; logoDP=3.825; NsEucl=0.892; NSW=0.930; rcor=43; rNcor=106; rlogoDP=126; rNsEucl=40; rNSW=38; rank_mean=70.600; match_rank= a 0 0 0 0 0 857.0 13498.0 13498.0 357.0 1361.0 13498.0 0 0 0 0 c 0 0 0 0 0 5691.0 5627.0 422.0 0.0 133.0 0.0 0 0 0 0 g 0 0 0 0 0 117.0 962.0 0.0 0.0 2988.0 0.0 0 0 0 0 t 0 0 0 0 0 7807.0 2652.0 1850.0 13498.0 13498.0 1082.0 0 0 0 0
MA0707.3_shift5 (MNX1)		0.841	0.459	5.434	0.880	0.914	52	126	66	66	53	72.600		; cluster_5 versus MA0707.3 (MNX1); m=47/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 72.6; -----yrATTA---- ; cor=0.841; Ncor=0.459; logoDP=5.434; NsEucl=0.880; NSW=0.914; rcor=52; rNcor=126; rlogoDP=66; rNsEucl=66; rNSW=53; rank_mean=72.600; match_rank= a 0 0 0 0 0 0.0 19178.0 19178.0 0.0 0.0 19178.0 0 0 0 0 c 0 0 0 0 0 8120.0 3243.0 0.0 0.0 2158.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 16561.0 0.0 0.0 797.0 0.0 0 0 0 0 t 0 0 0 0 0 11058.0 0.0 0.0 19178.0 19178.0 0.0 0 0 0 0
MA1498.3_shift5 (HOXA7)		0.848	0.463	3.794	0.887	0.923	48	117	127	46	43	76.200		; cluster_5 versus MA1498.3 (HOXA7); m=48/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 76.2; -----ymATTA---- ; cor=0.848; Ncor=0.463; logoDP=3.794; NsEucl=0.887; NSW=0.923; rcor=48; rNcor=117; rlogoDP=127; rNsEucl=46; rNSW=43; rank_mean=76.200; match_rank= a 0 0 0 0 0 1082.0 4447.0 8075.0 2.0 994.0 8075.0 0 0 0 0 c 0 0 0 0 0 4990.0 3628.0 199.0 0.0 439.0 478.0 0 0 0 0 g 0 0 0 0 0 310.0 525.0 622.0 0.0 0.0 252.0 0 0 0 0 t 0 0 0 0 0 3085.0 815.0 306.0 8075.0 8075.0 806.0 0 0 0 0
MA0893.3_shift4 (GSX2)		0.781	0.497	4.735	0.878	0.896	93	55	88	77	77	78.000		; cluster_5 versus MA0893.3 (GSX2); m=49/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 78; ----symATTA---- ; cor=0.781; Ncor=0.497; logoDP=4.735; NsEucl=0.878; NSW=0.896; rcor=93; rNcor=55; rlogoDP=88; rNsEucl=77; rNSW=77; rank_mean=78.000; match_rank= a 0 0 0 0 816.0 503.0 2775.0 4998.0 0.0 0.0 4998.0 0 0 0 0 c 0 0 0 0 2277.0 2611.0 2223.0 0.0 121.0 0.0 0.0 0 0 0 0 g 0 0 0 0 2721.0 400.0 95.0 708.0 0.0 77.0 1005.0 0 0 0 0 t 0 0 0 0 0.0 4998.0 29.0 0.0 4998.0 4998.0 20.0 0 0 0 0
MA0904.3_rc_shift5 (HOXB5_rc)		0.837	0.457	5.005	0.879	0.912	53	128	82	72	57	78.400		; cluster_5 versus MA0904.3_rc (HOXB5_rc); m=50/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 78.4; -----TMATKA---- ; cor=0.837; Ncor=0.457; logoDP=5.005; NsEucl=0.879; NSW=0.912; rcor=53; rNcor=128; rlogoDP=82; rNsEucl=72; rNSW=57; rank_mean=78.400; match_rank= a 0 0 0 0 0 0.0 3067.0 3067.0 0.0 0.0 3067.0 0 0 0 0 c 0 0 0 0 0 564.0 1061.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 26.0 0.0 0.0 1031.0 537.0 0 0 0 0 t 0 0 0 0 0 3067.0 6.0 0.0 3067.0 3067.0 0.0 0 0 0 0
MA0621.2_shift4 (mix-a)		0.786	0.500	6.952	0.864	0.870	87	48	14	126	125	80.000		; cluster_5 versus MA0621.2 (mix-a); m=51/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 80; ----tTAATTA---- ; cor=0.786; Ncor=0.500; logoDP=6.952; NsEucl=0.864; NSW=0.870; rcor=87; rNcor=48; rlogoDP=14; rNsEucl=126; rNSW=125; rank_mean=80.000; match_rank= a 0 0 0 0 130.0 0.0 1000.0 1000.0 0.0 0.0 938.0 0 0 0 0 c 0 0 0 0 146.0 0.0 0.0 0.0 0.0 0.0 21.0 0 0 0 0 g 0 0 0 0 46.0 0.0 0.0 0.0 0.0 0.0 21.0 0 0 0 0 t 0 0 0 0 679.0 1000.0 0.0 0.0 1000.0 1000.0 21.0 0 0 0 0
MA0705.2_shift5 (Lhx8)		0.831	0.453	4.625	0.879	0.912	55	131	94	69	54	80.600		; cluster_5 versus MA0705.2 (Lhx8); m=52/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 80.6; -----YAATYR---- ; cor=0.831; Ncor=0.453; logoDP=4.625; NsEucl=0.879; NSW=0.912; rcor=55; rNcor=131; rlogoDP=94; rNsEucl=69; rNSW=54; rank_mean=80.600; match_rank= a 0 0 0 0 0 0.0 5092.0 5092.0 0.0 0.0 5092.0 0 0 0 0 c 0 0 0 0 0 1996.0 160.0 0.0 0.0 2083.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 1670.0 0.0 0.0 88.0 1929.0 0 0 0 0 t 0 0 0 0 0 5092.0 0.0 0.0 5092.0 5092.0 0.0 0 0 0 0
MA1505.2_shift5 (HOXC8)		0.834	0.455	4.228	0.881	0.915	54	129	105	64	51	80.600		; cluster_5 versus MA1505.2 (HOXC8); m=53/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 80.6; -----yAATTR---- ; cor=0.834; Ncor=0.455; logoDP=4.228; NsEucl=0.881; NSW=0.915; rcor=54; rNcor=129; rlogoDP=105; rNsEucl=64; rNSW=51; rank_mean=80.600; match_rank= a 0 0 0 0 0 0.0 9273.0 9273.0 0.0 961.0 9273.0 0 0 0 0 c 0 0 0 0 0 4555.0 2727.0 20.0 0.0 99.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 19.0 0.0 211.0 2656.0 4325.0 0 0 0 0 t 0 0 0 0 0 9273.0 983.0 0.0 9273.0 9273.0 0.0 0 0 0 0
MA0710.2_shift4 (NOTO)		0.777	0.495	5.458	0.874	0.888	101	61	65	93	92	82.400		; cluster_5 versus MA0710.2 (NOTO); m=54/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 82.4; ----ytMATTA---- ; cor=0.777; Ncor=0.495; logoDP=5.458; NsEucl=0.874; NSW=0.888; rcor=101; rNcor=61; rlogoDP=65; rNsEucl=93; rNSW=92; rank_mean=82.400; match_rank= a 0 0 0 0 774.0 7097.0 15096.0 21405.0 0.0 374.0 21405.0 0 0 0 0 c 0 0 0 0 13986.0 4001.0 6310.0 0.0 0.0 62.0 0.0 0 0 0 0 g 0 0 0 0 617.0 573.0 0.0 0.0 0.0 422.0 2057.0 0 0 0 0 t 0 0 0 0 7419.0 21405.0 139.0 0.0 21405.0 21405.0 1904.0 0 0 0 0
MA0725.2_shift4 (VSX1)		0.780	0.496	4.437	0.877	0.893	94	56	102	82	80	82.800		; cluster_5 versus MA0725.2 (VSX1); m=55/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 82.8; ----yTAATTA---- ; cor=0.780; Ncor=0.496; logoDP=4.437; NsEucl=0.877; NSW=0.893; rcor=94; rNcor=56; rlogoDP=102; rNsEucl=82; rNSW=80; rank_mean=82.800; match_rank= a 0 0 0 0 756.0 1836.0 13572.0 13572.0 172.0 898.0 13572.0 0 0 0 0 c 0 0 0 0 8453.0 3131.0 626.0 154.0 199.0 761.0 516.0 0 0 0 0 g 0 0 0 0 561.0 572.0 553.0 172.0 103.0 984.0 3337.0 0 0 0 0 t 0 0 0 0 5119.0 13572.0 554.0 90.0 13572.0 13572.0 1372.0 0 0 0 0
MA1495.2_rc_shift5 (HOXA1_rc)		0.828	0.452	4.500	0.878	0.910	56	134	99	78	60	85.400		; cluster_5 versus MA1495.2_rc (HOXA1_rc); m=56/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 85.4; -----TaATTA---- ; cor=0.828; Ncor=0.452; logoDP=4.500; NsEucl=0.878; NSW=0.910; rcor=56; rNcor=134; rlogoDP=99; rNsEucl=78; rNSW=60; rank_mean=85.400; match_rank= a 0 0 0 0 0 0.0 7406.0 7406.0 0.0 0.0 7406.0 0 0 0 0 c 0 0 0 0 0 1576.0 2265.0 0.0 0.0 1244.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 1310.0 0.0 0.0 2083.0 1546.0 0 0 0 0 t 0 0 0 0 0 7406.0 0.0 0.0 7406.0 7406.0 0.0 0 0 0 0
MA1502.2_shift4 (HOXB8)		0.773	0.492	5.519	0.873	0.887	114	70	62	96	96	87.600		; cluster_5 versus MA1502.2 (HOXB8); m=57/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 87.6; ----gymATTA---- ; cor=0.773; Ncor=0.492; logoDP=5.519; NsEucl=0.873; NSW=0.887; rcor=114; rNcor=70; rlogoDP=62; rNsEucl=96; rNSW=96; rank_mean=87.600; match_rank= a 0 0 0 0 522.0 0.0 4474.0 4474.0 0.0 284.0 4474.0 0 0 0 0 c 0 0 0 0 536.0 2560.0 3374.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 2779.0 0.0 89.0 0.0 0.0 542.0 0.0 0 0 0 0 t 0 0 0 0 637.0 1914.0 0.0 0.0 4474.0 4474.0 0.0 0 0 0 0
MA1507.2_shift5 (HOXD4)		0.813	0.443	5.595	0.868	0.895	62	139	60	110	78	89.800		; cluster_5 versus MA1507.2 (HOXD4); m=58/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 89.8; -----YmATTA---- ; cor=0.813; Ncor=0.443; logoDP=5.595; NsEucl=0.868; NSW=0.895; rcor=62; rNcor=139; rlogoDP=60; rNsEucl=110; rNSW=78; rank_mean=89.800; match_rank= a 0 0 0 0 0 0.0 1542.0 3405.0 0.0 0.0 3405.0 0 0 0 0 c 0 0 0 0 0 1184.0 1862.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 176.0 0.0 0.0 194.0 0 0 0 0 t 0 0 0 0 0 3405.0 0.0 0.0 3405.0 3405.0 0.0 0 0 0 0
MA0910.3_shift4 (HOXD8)		0.771	0.491	5.519	0.872	0.885	116	73	63	98	100	90.000		; cluster_5 versus MA0910.3 (HOXD8); m=59/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 90; ----gymATTA---- ; cor=0.771; Ncor=0.491; logoDP=5.519; NsEucl=0.872; NSW=0.885; rcor=116; rNcor=73; rlogoDP=63; rNsEucl=98; rNSW=100; rank_mean=90.000; match_rank= a 0 0 0 0 537.0 0.0 3629.0 3629.0 0.0 178.0 3629.0 0 0 0 0 c 0 0 0 0 405.0 2150.0 3006.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 2287.0 0.0 47.0 0.0 0.0 507.0 0.0 0 0 0 0 t 0 0 0 0 399.0 1480.0 0.0 0.0 3629.0 3629.0 0.0 0 0 0 0
MA0726.2_shift4 (VSX2)		0.775	0.493	5.060	0.872	0.885	109	66	79	99	101	90.800		; cluster_5 versus MA0726.2 (VSX2); m=60/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 90.8; ----yTAATTA---- ; cor=0.775; Ncor=0.493; logoDP=5.060; NsEucl=0.872; NSW=0.885; rcor=109; rNcor=66; rlogoDP=79; rNsEucl=99; rNSW=101; rank_mean=90.800; match_rank= a 0 0 0 0 427.0 1080.0 13809.0 13809.0 118.0 626.0 13809.0 0 0 0 0 c 0 0 0 0 9554.0 2725.0 397.0 124.0 186.0 567.0 321.0 0 0 0 0 g 0 0 0 0 445.0 363.0 343.0 123.0 92.0 447.0 2109.0 0 0 0 0 t 0 0 0 0 4255.0 13809.0 402.0 63.0 13809.0 13809.0 1014.0 0 0 0 0
MA0025.3_shift8 (NFIL3)		0.803	0.432	3.858	0.883	0.904	66	153	124	54	64	92.200		; cluster_5 versus MA0025.3 (NFIL3); m=61/88; ncol2=9; w=0; offset=4; strand=D; shift=8; score= 92.2; --------TTATGyA ; cor=0.803; Ncor=0.432; logoDP=3.858; NsEucl=0.883; NSW=0.904; rcor=66; rNcor=153; rlogoDP=124; rNsEucl=54; rNSW=64; rank_mean=92.200; match_rank= a 0 0 0 0 0 0 0 0 870.0 468.0 21353.0 659.0 1460.0 1358.0 21848.0 c 0 0 0 0 0 0 0 0 681.0 208.0 220.0 1511.0 467.0 12004.0 543.0 g 0 0 0 0 0 0 0 0 518.0 1714.0 990.0 492.0 20459.0 454.0 171.0 t 0 0 0 0 0 0 0 0 20927.0 20606.0 433.0 20334.0 610.0 9180.0 434.0
MA1471.2_shift2 (BARX2)		0.794	0.428	4.107	0.882	0.903	75	158	111	56	67	93.400		; cluster_5 versus MA1471.2 (BARX2); m=62/88; ncol2=9; w=-2; offset=-2; strand=D; shift=2; score= 93.4; --wAAymRTTA---- ; cor=0.794; Ncor=0.428; logoDP=4.107; NsEucl=0.882; NSW=0.903; rcor=75; rNcor=158; rlogoDP=111; rNsEucl=56; rNSW=67; rank_mean=93.400; match_rank= a 0 0 18517.0 28388.0 28388.0 2814.0 15759.0 28388.0 7.0 19.0 28388.0 0 0 0 0 c 0 0 69.0 30.0 3348.0 16934.0 28388.0 49.0 0.0 2051.0 325.0 0 0 0 0 g 0 0 47.0 99.0 2920.0 1342.0 5135.0 10009.0 41.0 0.0 415.0 0 0 0 0 t 0 0 9871.0 7507.0 2847.0 11453.0 3452.0 0.0 28388.0 28388.0 4259.0 0 0 0 0
MA0661.2_shift4 (MEOX1)		0.768	0.489	5.074	0.870	0.883	120	77	77	102	105	96.200		; cluster_5 versus MA0661.2 (MEOX1); m=63/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 96.2; ----sTAATTA---- ; cor=0.768; Ncor=0.489; logoDP=5.074; NsEucl=0.870; NSW=0.883; rcor=120; rNcor=77; rlogoDP=77; rNsEucl=102; rNSW=105; rank_mean=96.200; match_rank= a 0 0 0 0 150.0 64.0 3000.0 3000.0 8.0 14.0 3000.0 0 0 0 0 c 0 0 0 0 1637.0 406.0 848.0 0.0 29.0 242.0 0.0 0 0 0 0 g 0 0 0 0 1363.0 53.0 151.0 2.0 0.0 328.0 338.0 0 0 0 0 t 0 0 0 0 115.0 3000.0 39.0 3.0 3000.0 3000.0 6.0 0 0 0 0
MA1504.2_shift5 (HOXC4)		0.799	0.436	5.391	0.864	0.889	71	147	68	125	88	99.800		; cluster_5 versus MA1504.2 (HOXC4); m=64/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 99.8; -----YmATTA---- ; cor=0.799; Ncor=0.436; logoDP=5.391; NsEucl=0.864; NSW=0.889; rcor=71; rNcor=147; rlogoDP=68; rNsEucl=125; rNSW=88; rank_mean=99.800; match_rank= a 0 0 0 0 0 188.0 3607.0 8759.0 0.0 0.0 8759.0 0 0 0 0 c 0 0 0 0 0 3111.0 5152.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 583.0 0.0 0.0 825.0 0 0 0 0 t 0 0 0 0 0 8759.0 0.0 0.0 8759.0 8759.0 0.0 0 0 0 0
MA0706.2_shift4 (MEOX2)		0.763	0.485	3.686	0.875	0.890	129	83	134	88	86	104.000		; cluster_5 versus MA0706.2 (MEOX2); m=65/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 104; ----sTaATtA---- ; cor=0.763; Ncor=0.485; logoDP=3.686; NsEucl=0.875; NSW=0.890; rcor=129; rNcor=83; rlogoDP=134; rNsEucl=88; rNSW=86; rank_mean=104.000; match_rank= a 0 0 0 0 3262.0 1469.0 23930.0 23930.0 76.0 1152.0 23930.0 0 0 0 0 c 0 0 0 0 8942.0 5055.0 8988.0 788.0 38.0 6039.0 359.0 0 0 0 0 g 0 0 0 0 14987.0 642.0 3016.0 272.0 169.0 4974.0 4099.0 0 0 0 0 t 0 0 0 0 2754.0 23930.0 900.0 492.0 23930.0 23930.0 1032.0 0 0 0 0
MA1500.2_rc_shift4 (HOXB6_rc)		0.770	0.490	1.701	0.876	0.892	118	75	163	84	83	104.600		; cluster_5 versus MA1500.2_rc (HOXB6_rc); m=66/88; ncol2=7; w=0; offset=0; strand=R; shift=4; score= 104.6; ----gymATTA---- ; cor=0.770; Ncor=0.490; logoDP=1.701; NsEucl=0.876; NSW=0.892; rcor=118; rNcor=75; rlogoDP=163; rNsEucl=84; rNSW=83; rank_mean=104.600; match_rank= a 0 0 0 0 1324.0 0.0 6192.0 6192.0 0.0 564.0 6192.0 0 0 0 0 c 0 0 0 0 996.0 3064.0 4139.0 727.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 4868.0 0.0 926.0 436.0 0.0 647.0 710.0 0 0 0 0 t 0 0 0 0 691.0 3128.0 403.0 0.0 6192.0 6192.0 0.0 0 0 0 0
MA2119.1_shift4 (HOXA3)		0.756	0.481	5.267	0.867	0.877	138	90	70	113	115	105.200		; cluster_5 versus MA2119.1 (HOXA3); m=67/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 105.2; ----sTMATTA---- ; cor=0.756; Ncor=0.481; logoDP=5.267; NsEucl=0.867; NSW=0.877; rcor=138; rNcor=90; rlogoDP=70; rNsEucl=113; rNSW=115; rank_mean=105.200; match_rank= a 0 0 0 0 93.0 0.0 2540.0 2540.0 0.0 0.0 2540.0 0 0 0 0 c 0 0 0 0 1246.0 502.0 1022.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 1294.0 0.0 10.0 0.0 0.0 517.0 361.0 0 0 0 0 t 0 0 0 0 138.0 2540.0 0.0 0.0 2540.0 2540.0 0.0 0 0 0 0
MA0702.3_shift4 (LMX1A)		0.764	0.486	6.870	0.858	0.858	128	80	15	153	151	105.400		; cluster_5 versus MA0702.3 (LMX1A); m=68/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 105.4; ----yTAATTA---- ; cor=0.764; Ncor=0.486; logoDP=6.870; NsEucl=0.858; NSW=0.858; rcor=128; rNcor=80; rlogoDP=15; rNsEucl=153; rNSW=151; rank_mean=105.400; match_rank= a 0 0 0 0 90.0 0.0 7355.0 7355.0 0.0 0.0 7355.0 0 0 0 0 c 0 0 0 0 2222.0 31.0 0.0 9.0 50.0 0.0 102.0 0 0 0 0 g 0 0 0 0 305.0 19.0 0.0 0.0 0.0 0.0 501.0 0 0 0 0 t 0 0 0 0 5133.0 7355.0 0.0 0.0 7355.0 7355.0 0.0 0 0 0 0
MA1501.2_shift4 (HOXB7)		0.756	0.481	5.196	0.865	0.873	135	88	74	120	122	107.800		; cluster_5 versus MA1501.2 (HOXB7); m=69/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 107.8; ----GyAATTA---- ; cor=0.756; Ncor=0.481; logoDP=5.196; NsEucl=0.865; NSW=0.873; rcor=135; rNcor=88; rlogoDP=74; rNsEucl=120; rNSW=122; rank_mean=107.800; match_rank= a 0 0 0 0 0.0 0.0 828.0 828.0 0.0 79.0 828.0 0 0 0 0 c 0 0 0 0 0.0 359.0 222.0 29.0 0.0 3.0 0.0 0 0 0 0 g 0 0 0 0 828.0 51.0 0.0 0.0 31.0 0.0 151.0 0 0 0 0 t 0 0 0 0 87.0 828.0 0.0 0.0 828.0 828.0 0.0 0 0 0 0
MA0043.4_shift8 (HLF)		0.786	0.423	4.596	0.872	0.885	84	164	96	97	99	108.000		; cluster_5 versus MA0043.4 (HLF); m=70/88; ncol2=9; w=0; offset=4; strand=D; shift=8; score= 108; --------TTATGYA ; cor=0.786; Ncor=0.423; logoDP=4.596; NsEucl=0.872; NSW=0.885; rcor=84; rNcor=164; rlogoDP=96; rNsEucl=97; rNSW=99; rank_mean=108.000; match_rank= a 0 0 0 0 0 0 0 0 295.0 162.0 22746.0 197.0 2418.0 369.0 24156.0 c 0 0 0 0 0 0 0 0 242.0 96.0 125.0 1548.0 112.0 17203.0 122.0 g 0 0 0 0 0 0 0 0 148.0 895.0 1344.0 253.0 21705.0 199.0 48.0 t 0 0 0 0 0 0 0 0 23739.0 23271.0 209.0 22426.0 189.0 6653.0 98.0
MA1499.2_shift5 (HOXB4)		0.791	0.432	5.722	0.859	0.880	82	155	53	149	109	109.600		; cluster_5 versus MA1499.2 (HOXB4); m=71/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 109.6; -----TmATTA---- ; cor=0.791; Ncor=0.432; logoDP=5.722; NsEucl=0.859; NSW=0.880; rcor=82; rNcor=155; rlogoDP=53; rNsEucl=149; rNSW=109; rank_mean=109.600; match_rank= a 0 0 0 0 0 0.0 3621.0 9080.0 0.0 0.0 9080.0 0 0 0 0 c 0 0 0 0 0 2103.0 5459.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 265.0 0.0 271.0 55.0 0 0 0 0 t 0 0 0 0 0 9080.0 0.0 0.0 9080.0 9080.0 0.0 0 0 0 0
MA0068.2_shift4 (PAX4)		0.709	0.516	5.614	0.866	0.856	183	37	58	118	156	110.400		; cluster_5 versus MA0068.2 (PAX4); m=72/88; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 110.4; ----ctAATTAg--- ; cor=0.709; Ncor=0.516; logoDP=5.614; NsEucl=0.866; NSW=0.856; rcor=183; rNcor=37; rlogoDP=58; rNsEucl=118; rNSW=156; rank_mean=110.400; match_rank= a 0 0 0 0 37.0 58.0 333.0 333.0 0.0 18.0 333.0 150.0 0 0 0 c 0 0 0 0 333.0 30.0 2.0 0.0 0.0 11.0 89.0 93.0 0 0 0 g 0 0 0 0 47.0 120.0 0.0 0.0 5.0 10.0 11.0 333.0 0 0 0 t 0 0 0 0 105.0 333.0 3.0 0.0 333.0 333.0 12.0 41.0 0 0 0
MA1497.2_shift4 (HOXA6)		0.756	0.481	3.349	0.874	0.888	137	89	143	92	91	110.400		; cluster_5 versus MA1497.2 (HOXA6); m=73/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 110.4; ----gymATTA---- ; cor=0.756; Ncor=0.481; logoDP=3.349; NsEucl=0.874; NSW=0.888; rcor=137; rNcor=89; rlogoDP=143; rNsEucl=92; rNSW=91; rank_mean=110.400; match_rank= a 0 0 0 0 1337.0 87.0 7201.0 7201.0 0.0 1911.0 7201.0 0 0 0 0 c 0 0 0 0 1725.0 2967.0 3768.0 745.0 0.0 233.0 94.0 0 0 0 0 g 0 0 0 0 7201.0 100.0 833.0 908.0 0.0 553.0 502.0 0 0 0 0 t 0 0 0 0 1605.0 4234.0 1482.0 11.0 7201.0 7201.0 663.0 0 0 0 0
MA0722.2_shift4 (VAX1)		0.754	0.480	3.438	0.873	0.887	140	92	139	95	95	112.200		; cluster_5 versus MA0722.2 (VAX1); m=74/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 112.2; ----yTAATtA---- ; cor=0.754; Ncor=0.480; logoDP=3.438; NsEucl=0.873; NSW=0.887; rcor=140; rNcor=92; rlogoDP=139; rNsEucl=95; rNSW=95; rank_mean=112.200; match_rank= a 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 0 0 0 0 c 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 0 0 0 0 g 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 0 0 0 0 t 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0 0 0 0 0
MA0648.2_rc_shift5 (GSC_rc)		0.800	0.436	3.997	0.862	0.886	69	146	118	134	98	113.000		; cluster_5 versus MA0648.2_rc (GSC_rc); m=75/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 113; -----GGATTA---- ; cor=0.800; Ncor=0.436; logoDP=3.997; NsEucl=0.862; NSW=0.886; rcor=69; rNcor=146; rlogoDP=118; rNsEucl=134; rNSW=98; rank_mean=113.000; match_rank= a 0 0 0 0 0 1099.0 787.0 6081.0 0.0 89.0 6081.0 0 0 0 0 c 0 0 0 0 0 828.0 452.0 144.0 0.0 176.0 0.0 0 0 0 0 g 0 0 0 0 0 6081.0 6081.0 25.0 0.0 71.0 54.0 0 0 0 0 t 0 0 0 0 0 315.0 416.0 0.0 6081.0 6081.0 0.0 0 0 0 0
MA0681.3_shift0 (PHOX2B)		0.759	0.405	4.858	0.878	0.880	133	182	85	79	108	117.400		; cluster_5 versus MA0681.3 (PHOX2B); m=76/88; ncol2=12; w=-4; offset=-4; strand=D; shift=0; score= 117.4; TAATCAAATTAw--- ; cor=0.759; Ncor=0.405; logoDP=4.858; NsEucl=0.878; NSW=0.880; rcor=133; rNcor=182; rlogoDP=85; rNsEucl=79; rNSW=108; rank_mean=117.400; match_rank= a 10344.0 42696.0 51239.0 1742.0 2451.0 43074.0 48550.0 50675.0 921.0 4103.0 42869.0 16088.0 0 0 0 c 2748.0 1935.0 496.0 615.0 36619.0 1895.0 1453.0 451.0 329.0 1923.0 1936.0 4909.0 0 0 0 g 2542.0 2289.0 508.0 467.0 1873.0 588.0 1418.0 761.0 372.0 1232.0 2155.0 5569.0 0 0 0 t 37602.0 6316.0 993.0 50412.0 12293.0 7679.0 1815.0 1349.0 51614.0 45978.0 6276.0 26670.0 0 0 0
MA2093.1_shift4 (HOXB1)		0.741	0.471	4.649	0.865	0.872	153	103	91	122	123	118.400		; cluster_5 versus MA2093.1 (HOXB1); m=77/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 118.4; ----sTAATTA---- ; cor=0.741; Ncor=0.471; logoDP=4.649; NsEucl=0.865; NSW=0.872; rcor=153; rNcor=103; rlogoDP=91; rNsEucl=122; rNSW=123; rank_mean=118.400; match_rank= a 0 0 0 0 71.0 0.0 2003.0 2003.0 0.0 0.0 2003.0 0 0 0 0 c 0 0 0 0 705.0 412.0 450.0 0.0 0.0 253.0 47.0 0 0 0 0 g 0 0 0 0 1298.0 0.0 307.0 0.0 1.0 262.0 633.0 0 0 0 0 t 0 0 0 0 0.0 2003.0 0.0 0.0 2003.0 2003.0 0.0 0 0 0 0
MA0891.2_rc_shift5 (GSC2_rc)		0.785	0.428	2.976	0.863	0.888	89	157	148	131	94	123.800		; cluster_5 versus MA0891.2_rc (GSC2_rc); m=78/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 123.8; -----gGATTA---- ; cor=0.785; Ncor=0.428; logoDP=2.976; NsEucl=0.863; NSW=0.888; rcor=89; rNcor=157; rlogoDP=148; rNsEucl=131; rNSW=94; rank_mean=123.800; match_rank= a 0 0 0 0 0 439.0 204.0 2016.0 132.0 201.0 2016.0 0 0 0 0 c 0 0 0 0 0 422.0 179.0 145.0 0.0 56.0 0.0 0 0 0 0 g 0 0 0 0 0 2016.0 2016.0 41.0 11.0 87.0 0.0 0 0 0 0 t 0 0 0 0 0 182.0 255.0 0.0 2016.0 2016.0 116.0 0 0 0 0
MA1496.2_shift4 (HOXA4)		0.735	0.468	3.866	0.867	0.876	158	110	123	114	116	124.200		; cluster_5 versus MA1496.2 (HOXA4); m=79/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 124.2; ----rYmATTA---- ; cor=0.735; Ncor=0.468; logoDP=3.866; NsEucl=0.867; NSW=0.876; rcor=158; rNcor=110; rlogoDP=123; rNsEucl=114; rNSW=116; rank_mean=124.200; match_rank= a 0 0 0 0 1089.0 0.0 893.0 2454.0 0.0 0.0 2454.0 0 0 0 0 c 0 0 0 0 397.0 967.0 1561.0 0.0 0.0 173.0 146.0 0 0 0 0 g 0 0 0 0 1365.0 0.0 176.0 684.0 39.0 171.0 260.0 0 0 0 0 t 0 0 0 0 94.0 2454.0 0.0 0.0 2454.0 2454.0 0.0 0 0 0 0
MA0674.2_shift5 (NKX6-1)		0.726	0.462	4.926	0.857	0.856	169	118	83	160	157	137.400		; cluster_5 versus MA0674.2 (NKX6-1); m=80/88; ncol2=7; w=0; offset=1; strand=D; shift=5; score= 137.4; -----YmATTAa--- ; cor=0.726; Ncor=0.462; logoDP=4.926; NsEucl=0.857; NSW=0.856; rcor=169; rNcor=118; rlogoDP=83; rNsEucl=160; rNSW=157; rank_mean=137.400; match_rank= a 0 0 0 0 0 0.0 1407.0 2212.0 0.0 58.0 2212.0 1450.0 0 0 0 c 0 0 0 0 0 573.0 805.0 200.0 0.0 45.0 27.0 294.0 0 0 0 g 0 0 0 0 0 0.0 0.0 12.0 0.0 0.0 132.0 142.0 0 0 0 t 0 0 0 0 0 1640.0 195.0 40.0 2212.0 2212.0 17.0 327.0 0 0 0
MA0618.2_rc_shift4 (LBX1_rc)		0.735	0.468	1.968	0.861	0.864	159	112	160	141	136	141.600		; cluster_5 versus MA0618.2_rc (LBX1_rc); m=81/88; ncol2=7; w=0; offset=0; strand=R; shift=4; score= 141.6; ----CYARTTA---- ; cor=0.735; Ncor=0.468; logoDP=1.968; NsEucl=0.861; NSW=0.864; rcor=159; rNcor=112; rlogoDP=160; rNsEucl=141; rNSW=136; rank_mean=141.600; match_rank= a 0 0 0 0 57.0 0.0 738.0 738.0 0.0 0.0 951.0 0 0 0 0 c 0 0 0 0 799.0 268.0 119.0 0.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 114.0 0.0 0.0 262.0 0.0 0.0 49.0 0 0 0 0 t 0 0 0 0 29.0 731.0 143.0 0.0 999.0 999.0 0.0 0 0 0 0
MA0712.3_shift4 (OTX2)		0.718	0.457	5.055	0.851	0.845	177	127	80	173	174	146.200		; cluster_5 versus MA0712.3 (OTX2); m=82/88; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 146.2; ----rGGATTA---- ; cor=0.718; Ncor=0.457; logoDP=5.055; NsEucl=0.851; NSW=0.845; rcor=177; rNcor=127; rlogoDP=80; rNsEucl=173; rNSW=174; rank_mean=146.200; match_rank= a 0 0 0 0 37155.0 5435.0 2918.0 116411.0 765.0 1913.0 114798.0 0 0 0 0 c 0 0 0 0 5322.0 827.0 1620.0 2220.0 598.0 1771.0 636.0 0 0 0 0 g 0 0 0 0 55814.0 111741.0 113842.0 706.0 787.0 1407.0 1302.0 0 0 0 0 t 0 0 0 0 22388.0 2676.0 2299.0 1342.0 118529.0 115588.0 3943.0 0 0 0 0
MA0467.3_shift5 (Crx)		0.736	0.402	5.394	0.833	0.832	156	185	67	187	185	156.000		; cluster_5 versus MA0467.3 (Crx); m=83/88; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 156; -----GGATTA---- ; cor=0.736; Ncor=0.402; logoDP=5.394; NsEucl=0.833; NSW=0.832; rcor=156; rNcor=185; rlogoDP=67; rNsEucl=187; rNSW=185; rank_mean=156.000; match_rank= a 0 0 0 0 0 19.0 26.0 4227.0 11.0 50.0 4241.0 0 0 0 0 c 0 0 0 0 0 155.0 36.0 17.0 32.0 25.0 25.0 0 0 0 0 g 0 0 0 0 0 4129.0 4200.0 42.0 9.0 20.0 23.0 0 0 0 0 t 0 0 0 0 0 30.0 71.0 47.0 4281.0 4238.0 44.0 0 0 0 0
MA1963.2_rc_shift8 (SATB1_rc)		0.721	0.459	3.188	0.848	0.838	175	125	145	178	180	160.600		; cluster_5 versus MA1963.2_rc (SATB1_rc); m=84/88; ncol2=7; w=0; offset=4; strand=R; shift=8; score= 160.6; --------TTATTAG ; cor=0.721; Ncor=0.459; logoDP=3.188; NsEucl=0.848; NSW=0.838; rcor=175; rNcor=125; rlogoDP=145; rNsEucl=178; rNSW=180; rank_mean=160.600; match_rank= a 0 0 0 0 0 0 0 0 1612.0 841.0 33685.0 1281.0 169.0 33500.0 700.0 c 0 0 0 0 0 0 0 0 1071.0 889.0 123.0 120.0 221.0 37.0 140.0 g 0 0 0 0 0 0 0 0 881.0 485.0 128.0 115.0 164.0 195.0 33122.0 t 0 0 0 0 0 0 0 0 30660.0 32009.0 288.0 32708.0 33670.0 492.0 262.0
MA0601.2_rc_shift7 (Arid3b_rc)		0.711	0.452	1.425	0.855	0.853	180	132	169	166	161	161.600		; cluster_5 versus MA0601.2_rc (Arid3b_rc); m=85/88; ncol2=7; w=0; offset=3; strand=R; shift=7; score= 161.6; -------ATTAAtw- ; cor=0.711; Ncor=0.452; logoDP=1.425; NsEucl=0.855; NSW=0.853; rcor=180; rNcor=132; rlogoDP=169; rNsEucl=166; rNSW=161; rank_mean=161.600; match_rank= a 0 0 0 0 0 0 0 911.0 89.0 0.0 1000.0 895.0 238.0 566.0 0 c 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 34.0 80.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 119.0 80.0 0 t 0 0 0 0 0 0 0 89.0 911.0 1000.0 0.0 104.0 609.0 273.0 0
MA0711.2_rc_shift5 (OTX1_rc)		0.736	0.402	3.734	0.842	0.851	155	184	132	182	164	163.400		; cluster_5 versus MA0711.2_rc (OTX1_rc); m=86/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 163.4; -----gGATTA---- ; cor=0.736; Ncor=0.402; logoDP=3.734; NsEucl=0.842; NSW=0.851; rcor=155; rNcor=184; rlogoDP=132; rNsEucl=182; rNSW=164; rank_mean=163.400; match_rank= a 0 0 0 0 0 3363.0 378.0 23441.0 0.0 544.0 23441.0 0 0 0 0 c 0 0 0 0 0 8662.0 659.0 3160.0 0.0 254.0 0.0 0 0 0 0 g 0 0 0 0 0 23441.0 23441.0 0.0 0.0 0.0 90.0 0 0 0 0 t 0 0 0 0 0 789.0 647.0 243.0 23441.0 23441.0 745.0 0 0 0 0
MA0714.2_rc_shift5 (PITX3_rc)		0.736	0.402	3.360	0.844	0.854	154	183	142	181	159	163.800		; cluster_5 versus MA0714.2_rc (PITX3_rc); m=87/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 163.8; -----GGATTA---- ; cor=0.736; Ncor=0.402; logoDP=3.360; NsEucl=0.844; NSW=0.854; rcor=154; rNcor=183; rlogoDP=142; rNsEucl=181; rNSW=159; rank_mean=163.800; match_rank= a 0 0 0 0 0 968.0 236.0 6253.0 0.0 158.0 6253.0 0 0 0 0 c 0 0 0 0 0 239.0 166.0 1101.0 15.0 260.0 9.0 0 0 0 0 g 0 0 0 0 0 6253.0 6253.0 138.0 0.0 32.0 51.0 0 0 0 0 t 0 0 0 0 0 227.0 318.0 262.0 6253.0 6253.0 493.0 0 0 0 0
MA0682.3_rc_shift5 (PITX1_rc)		0.736	0.401	4.076	0.833	0.833	157	186	114	186	184	165.400		; cluster_5 versus MA0682.3_rc (PITX1_rc); m=88/88; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 165.4; -----GGATTA---- ; cor=0.736; Ncor=0.401; logoDP=4.076; NsEucl=0.833; NSW=0.833; rcor=157; rNcor=186; rlogoDP=114; rNsEucl=186; rNSW=184; rank_mean=165.400; match_rank= a 0 0 0 0 0 547.0 141.0 10531.0 0.0 0.0 10531.0 0 0 0 0 c 0 0 0 0 0 134.0 0.0 1039.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 10531.0 10531.0 0.0 0.0 0.0 0.0 0 0 0 0 t 0 0 0 0 0 68.0 143.0 0.0 10531.0 10531.0 0.0 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_1_shift0 ; 2 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_1_shift0 (cluster_1)														; cluster_1; m=0 (reference); ncol1=19; shift=0; ncol=19; AAAAAAAAAAAAAAwwwwa ; Alignment reference a 5276 5393 5928 6364 6295 6533 6509 4910 6131 6478 5786 5205 4900 4839 784 973 696 829 820 c 395 207 281 53 37 21 13 27 8 72 39 67 305 195 30 287 112 312 379 g 128 121 42 35 162 47 30 166 302 30 38 148 303 823 74 50 67 129 147 t 672 750 220 253 211 104 153 1602 264 125 842 1285 1197 848 868 446 881 486 410
MA1125.2_shift1 (ZNF384)		0.979	0.412	8.541	0.960	0.987	1	175	4	1	1	36.400	11	; cluster_1 versus MA1125.2 (ZNF384); m=1/1; ncol2=8; w=0; offset=1; strand=D; shift=1; score= 36.4; -AAAAAAaa---------- ; cor=0.979; Ncor=0.412; logoDP=8.541; NsEucl=0.960; NSW=0.987; rcor=1; rNcor=175; rlogoDP=4; rNsEucl=1; rNSW=1; rank_mean=36.400; match_rank=11 a 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 0 0 0 0 0 0 0 c 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 0 0 0 0 0 0 0 g 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 0 0 0 0 0 0 0 t 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_2_shift3 ; 42 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_2_shift3 (cluster_2)														; cluster_2; m=0 (reference); ncol1=11; shift=3; ncol=14; ---aaAArAATtaw ; Alignment reference a 0 0 0 839 741 1443 1379 976 1380 1373 258 246 784 714 c 0 0 0 270 247 7 2 6 8 22 8 9 183 109 g 0 0 0 203 339 17 14 473 74 5 9 242 194 197 t 0 0 0 162 147 7 79 19 12 74 1199 977 313 454
MA1125.2_shift3 (ZNF384)		0.825	0.600	5.655	0.890	0.903	57	5	56	42	68	45.600	24	; cluster_2 versus MA1125.2 (ZNF384); m=1/41; ncol2=8; w=0; offset=0; strand=D; shift=3; score= 45.6; ---AAAAAAaa--- ; cor=0.825; Ncor=0.600; logoDP=5.655; NsEucl=0.890; NSW=0.903; rcor=57; rNcor=5; rlogoDP=56; rNsEucl=42; rNSW=68; rank_mean=45.600; match_rank=24 a 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 c 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 g 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 t 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0
MA2124.1_rc_shift3 (Hmga1_rc)		0.843	0.613	1.573	0.897	0.915	51	4	164	33	52	60.800	43	; cluster_2 versus MA2124.1_rc (Hmga1_rc); m=2/41; ncol2=8; w=0; offset=0; strand=R; shift=3; score= 60.8; ---wTAAAAAT--- ; cor=0.843; Ncor=0.613; logoDP=1.573; NsEucl=0.897; NSW=0.915; rcor=51; rNcor=4; rlogoDP=164; rNsEucl=33; rNSW=52; rank_mean=60.800; match_rank=43 a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0 0
MA1563.2_shift5 (SOX18)		0.754	0.548	5.076	0.882	0.888	141	16	76	61	93	77.400		; cluster_2 versus MA1563.2 (SOX18); m=3/41; ncol2=8; w=0; offset=2; strand=D; shift=5; score= 77.4; -----aACAATdv- ; cor=0.754; Ncor=0.548; logoDP=5.076; NsEucl=0.882; NSW=0.888; rcor=141; rNcor=16; rlogoDP=76; rNsEucl=61; rNSW=93; rank_mean=77.400; match_rank= a 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 0 c 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 0 g 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 0 t 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0 0
MA1729.2_shift0 (ZNF680)		0.794	0.454	5.236	0.884	0.893	77	130	71	48	82	81.600		; cluster_2 versus MA1729.2 (ZNF680); m=4/41; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score= 81.6; CCAAGAAGAAT--- ; cor=0.794; Ncor=0.454; logoDP=5.236; NsEucl=0.884; NSW=0.893; rcor=77; rNcor=130; rlogoDP=71; rNsEucl=48; rNSW=82; rank_mean=81.600; match_rank= a 418.0 1120.0 5394.0 4522.0 43.0 5681.0 5479.0 494.0 5661.0 4020.0 202.0 0 0 0 c 4870.0 4324.0 60.0 17.0 14.0 23.0 13.0 40.0 41.0 808.0 396.0 0 0 0 g 133.0 69.0 208.0 1116.0 5691.0 44.0 203.0 5144.0 39.0 163.0 213.0 0 0 0 t 345.0 253.0 104.0 111.0 18.0 18.0 71.0 88.0 25.0 775.0 4955.0 0 0 0
MA0721.2_shift7 (UNCX)		0.801	0.437	2.641	0.881	0.915	68	145	154	63	50	96.000		; cluster_2 versus MA0721.2 (UNCX); m=5/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 96; -------yAATTA- ; cor=0.801; Ncor=0.437; logoDP=2.641; NsEucl=0.881; NSW=0.915; rcor=68; rNcor=145; rlogoDP=154; rNsEucl=63; rNSW=50; rank_mean=96.000; match_rank= a 0 0 0 0 0 0 0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 0 c 0 0 0 0 0 0 0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 0 g 0 0 0 0 0 0 0 2086.0 4582.0 420.0 117.0 1782.0 731.0 0 t 0 0 0 0 0 0 0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 0
MA0630.2_rc_shift7 (SHOX_rc)		0.801	0.437	2.987	0.879	0.912	67	144	147	73	58	97.800		; cluster_2 versus MA0630.2_rc (SHOX_rc); m=6/41; ncol2=6; w=0; offset=4; strand=R; shift=7; score= 97.8; -------yAATTA- ; cor=0.801; Ncor=0.437; logoDP=2.987; NsEucl=0.879; NSW=0.912; rcor=67; rNcor=144; rlogoDP=147; rNsEucl=73; rNSW=58; rank_mean=97.800; match_rank= a 0 0 0 0 0 0 0 111.0 768.0 943.0 2.0 45.0 886.0 0 c 0 0 0 0 0 0 0 424.0 84.0 27.0 5.0 55.0 9.0 0 g 0 0 0 0 0 0 0 48.0 50.0 15.0 2.0 48.0 30.0 0 t 0 0 0 0 0 0 0 416.0 98.0 15.0 991.0 852.0 74.0 0
MA0634.2_shift7 (ALX3)		0.797	0.435	2.672	0.879	0.912	74	149	153	70	55	100.200		; cluster_2 versus MA0634.2 (ALX3); m=7/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 100.2; -------yAATTA- ; cor=0.797; Ncor=0.435; logoDP=2.672; NsEucl=0.879; NSW=0.912; rcor=74; rNcor=149; rlogoDP=153; rNsEucl=70; rNSW=55; rank_mean=100.200; match_rank= a 0 0 0 0 0 0 0 794.0 7877.0 7877.0 76.0 697.0 7877.0 0 c 0 0 0 0 0 0 0 3367.0 506.0 317.0 72.0 729.0 449.0 0 g 0 0 0 0 0 0 0 345.0 885.0 141.0 8.0 239.0 87.0 0 t 0 0 0 0 0 0 0 4510.0 629.0 231.0 7877.0 7877.0 977.0 0
MA0716.2_shift7 (PRRX1)		0.803	0.438	3.234	0.875	0.906	65	143	144	87	62	100.200		; cluster_2 versus MA0716.2 (PRRX1); m=8/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 100.2; -------yAATTA- ; cor=0.803; Ncor=0.438; logoDP=3.234; NsEucl=0.875; NSW=0.906; rcor=65; rNcor=143; rlogoDP=144; rNsEucl=87; rNSW=62; rank_mean=100.200; match_rank= a 0 0 0 0 0 0 0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 0 c 0 0 0 0 0 0 0 11122.0 1088.0 503.0 3.0 2302.0 644.0 0 g 0 0 0 0 0 0 0 1121.0 1776.0 202.0 0.0 1004.0 136.0 0 t 0 0 0 0 0 0 0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 0
MA0662.2_shift7 (MIXL1)		0.794	0.433	2.708	0.879	0.912	76	150	151	71	56	100.800		; cluster_2 versus MA0662.2 (MIXL1); m=9/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 100.8; -------yAATTA- ; cor=0.794; Ncor=0.433; logoDP=2.708; NsEucl=0.879; NSW=0.912; rcor=76; rNcor=150; rlogoDP=151; rNsEucl=71; rNSW=56; rank_mean=100.800; match_rank= a 0 0 0 0 0 0 0 2635.0 27042.0 27042.0 0.0 1385.0 27042.0 0 c 0 0 0 0 0 0 0 11639.0 1911.0 662.0 510.0 4270.0 1903.0 0 g 0 0 0 0 0 0 0 1245.0 3660.0 556.0 181.0 2031.0 115.0 0 t 0 0 0 0 0 0 0 15403.0 1038.0 736.0 27042.0 27042.0 2895.0 0
MA1577.2_shift7 (TLX2)		0.814	0.444	4.340	0.865	0.891	61	138	104	121	85	101.800		; cluster_2 versus MA1577.2 (TLX2); m=10/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 101.8; -------yAATTA- ; cor=0.814; Ncor=0.444; logoDP=4.340; NsEucl=0.865; NSW=0.891; rcor=61; rNcor=138; rlogoDP=104; rNsEucl=121; rNSW=85; rank_mean=101.800; match_rank= a 0 0 0 0 0 0 0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 0 c 0 0 0 0 0 0 0 7799.0 0.0 0.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 1112.0 80.0 0.0 0.0 0.0 0.0 0 t 0 0 0 0 0 0 0 8156.0 0.0 0.0 7799.0 7799.0 0.0 0
MA0718.2_shift7 (RAX)		0.807	0.440	3.716	0.870	0.899	64	142	133	103	72	102.800		; cluster_2 versus MA0718.2 (RAX); m=11/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 102.8; -------yAATTA- ; cor=0.807; Ncor=0.440; logoDP=3.716; NsEucl=0.870; NSW=0.899; rcor=64; rNcor=142; rlogoDP=133; rNsEucl=103; rNSW=72; rank_mean=102.800; match_rank= a 0 0 0 0 0 0 0 214.0 2412.0 2412.0 123.0 71.0 2412.0 0 c 0 0 0 0 0 0 0 1281.0 17.0 38.0 0.0 71.0 0.0 0 g 0 0 0 0 0 0 0 25.0 3.0 12.0 0.0 49.0 20.0 0 t 0 0 0 0 0 0 0 1131.0 40.0 24.0 2412.0 2412.0 126.0 0
MA0717.2_shift7 (RAX2)		0.794	0.433	2.631	0.879	0.912	78	151	155	74	59	103.400		; cluster_2 versus MA0717.2 (RAX2); m=12/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 103.4; -------yAATTA- ; cor=0.794; Ncor=0.433; logoDP=2.631; NsEucl=0.879; NSW=0.912; rcor=78; rNcor=151; rlogoDP=155; rNsEucl=74; rNSW=59; rank_mean=103.400; match_rank= a 0 0 0 0 0 0 0 3558.0 38860.0 38860.0 270.0 2167.0 38860.0 0 c 0 0 0 0 0 0 0 19645.0 3060.0 1523.0 738.0 4232.0 2644.0 0 g 0 0 0 0 0 0 0 1688.0 4490.0 757.0 125.0 2513.0 360.0 0 t 0 0 0 0 0 0 0 19215.0 2421.0 1030.0 38860.0 38860.0 4258.0 0
MA1481.2_shift7 (DRGX)		0.798	0.435	3.631	0.869	0.897	72	148	135	107	74	107.200		; cluster_2 versus MA1481.2 (DRGX); m=13/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 107.2; -------yAATTA- ; cor=0.798; Ncor=0.435; logoDP=3.631; NsEucl=0.869; NSW=0.897; rcor=72; rNcor=148; rlogoDP=135; rNsEucl=107; rNSW=74; rank_mean=107.200; match_rank= a 0 0 0 0 0 0 0 1079.0 14867.0 14867.0 0.0 0.0 14867.0 0 c 0 0 0 0 0 0 0 5997.0 501.0 0.0 0.0 813.0 17.0 0 g 0 0 0 0 0 0 0 1111.0 2037.0 0.0 0.0 209.0 962.0 0 t 0 0 0 0 0 0 0 8870.0 0.0 0.0 14867.0 14867.0 144.0 0
MA0757.2_shift5 (ONECUT3)		0.734	0.472	4.713	0.879	0.869	162	101	89	68	130	110.000		; cluster_2 versus MA0757.2 (ONECUT3); m=14/41; ncol2=12; w=0; offset=2; strand=D; shift=5; score= 110; -----aAAAATCrA ; cor=0.734; Ncor=0.472; logoDP=4.713; NsEucl=0.879; NSW=0.869; rcor=162; rNcor=101; rlogoDP=89; rNsEucl=68; rNSW=130; rank_mean=110.000; match_rank= a 0 0 0 0 0 3851.0 6080.0 6080.0 6080.0 6080.0 32.0 23.0 3950.0 6080.0 c 0 0 0 0 0 379.0 274.0 173.0 28.0 5.0 103.0 6080.0 20.0 6.0 g 0 0 0 0 0 1141.0 498.0 112.0 102.0 41.0 14.0 3.0 2130.0 9.0 t 0 0 0 0 0 709.0 878.0 1221.0 54.0 11.0 6080.0 5.0 11.0 22.0
MA0725.2_rc_shift7 (VSX1_rc)		0.748	0.476	1.530	0.878	0.896	148	97	166	75	75	112.200		; cluster_2 versus MA0725.2_rc (VSX1_rc); m=15/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 112.2; -------TAATTAr ; cor=0.748; Ncor=0.476; logoDP=1.530; NsEucl=0.878; NSW=0.896; rcor=148; rNcor=97; rlogoDP=166; rNsEucl=75; rNSW=75; rank_mean=112.200; match_rank= a 0 0 0 0 0 0 0 1372.0 13572.0 13572.0 90.0 554.0 13572.0 5119.0 c 0 0 0 0 0 0 0 3337.0 984.0 103.0 172.0 553.0 572.0 561.0 g 0 0 0 0 0 0 0 516.0 761.0 199.0 154.0 626.0 3131.0 8453.0 t 0 0 0 0 0 0 0 13572.0 898.0 172.0 13572.0 13572.0 1836.0 756.0
MA0720.2_shift7 (Shox2)		0.793	0.433	3.604	0.867	0.893	79	152	136	117	81	113.000		; cluster_2 versus MA0720.2 (Shox2); m=16/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 113; -------yAATTA- ; cor=0.793; Ncor=0.433; logoDP=3.604; NsEucl=0.867; NSW=0.893; rcor=79; rNcor=152; rlogoDP=136; rNsEucl=117; rNSW=81; rank_mean=113.000; match_rank= a 0 0 0 0 0 0 0 979.0 18179.0 18179.0 29.0 597.0 18179.0 0 c 0 0 0 0 0 0 0 9027.0 626.0 138.0 12.0 545.0 193.0 0 g 0 0 0 0 0 0 0 228.0 426.0 3.0 0.0 870.0 36.0 0 t 0 0 0 0 0 0 0 9152.0 766.0 79.0 18179.0 18179.0 895.0 0
MA0084.2_shift4 (SRY)		0.745	0.474	4.225	0.868	0.878	152	99	106	109	112	115.600		; cluster_2 versus MA0084.2 (SRY); m=17/41; ncol2=7; w=0; offset=1; strand=D; shift=4; score= 115.6; ----waACAAw--- ; cor=0.745; Ncor=0.474; logoDP=4.225; NsEucl=0.868; NSW=0.878; rcor=152; rNcor=99; rlogoDP=106; rNsEucl=109; rNSW=112; rank_mean=115.600; match_rank= a 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 c 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 t 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0
MA0027.3_shift7 (EN1)		0.783	0.427	3.735	0.864	0.890	90	159	131	123	87	118.000		; cluster_2 versus MA0027.3 (EN1); m=18/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 118; -------yAATTA- ; cor=0.783; Ncor=0.427; logoDP=3.735; NsEucl=0.864; NSW=0.890; rcor=90; rNcor=159; rlogoDP=131; rNsEucl=123; rNSW=87; rank_mean=118.000; match_rank= a 0 0 0 0 0 0 0 104.0 2891.0 2891.0 0.0 57.0 2891.0 0 c 0 0 0 0 0 0 0 1328.0 99.0 28.0 0.0 483.0 0.0 0 g 0 0 0 0 0 0 0 5.0 71.0 0.0 0.0 162.0 30.0 0 t 0 0 0 0 0 0 0 1562.0 0.0 0.0 2891.0 2891.0 132.0 0
MA0880.2_shift7 (Dlx3)		0.775	0.422	2.449	0.873	0.903	110	166	156	94	66	118.400		; cluster_2 versus MA0880.2 (Dlx3); m=19/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 118.4; -------yAATTA- ; cor=0.775; Ncor=0.422; logoDP=2.449; NsEucl=0.873; NSW=0.903; rcor=110; rNcor=166; rlogoDP=156; rNsEucl=94; rNSW=66; rank_mean=118.400; match_rank= a 0 0 0 0 0 0 0 572.0 7323.0 7323.0 173.0 399.0 7323.0 0 c 0 0 0 0 0 0 0 4133.0 995.0 536.0 66.0 535.0 202.0 0 g 0 0 0 0 0 0 0 164.0 587.0 62.0 60.0 452.0 101.0 0 t 0 0 0 0 0 0 0 3190.0 643.0 299.0 7323.0 7323.0 691.0 0
MA0894.2_rc_shift7 (HESX1_rc)		0.792	0.432	4.114	0.859	0.881	81	154	110	146	106	119.400		; cluster_2 versus MA0894.2_rc (HESX1_rc); m=20/41; ncol2=6; w=0; offset=4; strand=R; shift=7; score= 119.4; -------yAATTA- ; cor=0.792; Ncor=0.432; logoDP=4.114; NsEucl=0.859; NSW=0.881; rcor=81; rNcor=154; rlogoDP=110; rNsEucl=146; rNSW=106; rank_mean=119.400; match_rank= a 0 0 0 0 0 0 0 97.0 4072.0 4072.0 0.0 31.0 4072.0 0 c 0 0 0 0 0 0 0 2180.0 0.0 15.0 9.0 53.0 34.0 0 g 0 0 0 0 0 0 0 38.0 15.0 0.0 7.0 0.0 0.0 0 t 0 0 0 0 0 0 0 1892.0 0.0 0.0 4072.0 4072.0 187.0 0
MA0881.2_shift7 (Dlx4)		0.772	0.421	2.680	0.869	0.898	115	168	152	105	73	122.600		; cluster_2 versus MA0881.2 (Dlx4); m=21/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 122.6; -------yAATTA- ; cor=0.772; Ncor=0.421; logoDP=2.680; NsEucl=0.869; NSW=0.898; rcor=115; rNcor=168; rlogoDP=152; rNsEucl=105; rNSW=73; rank_mean=122.600; match_rank= a 0 0 0 0 0 0 0 724.0 12054.0 12054.0 88.0 440.0 12054.0 0 c 0 0 0 0 0 0 0 6841.0 1500.0 744.0 85.0 868.0 316.0 0 g 0 0 0 0 0 0 0 145.0 739.0 55.0 38.0 542.0 134.0 0 t 0 0 0 0 0 0 0 5213.0 883.0 499.0 12054.0 12054.0 1127.0 0
MA0699.2_shift7 (LBX2)		0.766	0.418	2.405	0.871	0.900	125	171	157	101	71	125.000		; cluster_2 versus MA0699.2 (LBX2); m=22/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 125; -------yAATTA- ; cor=0.766; Ncor=0.418; logoDP=2.405; NsEucl=0.871; NSW=0.900; rcor=125; rNcor=171; rlogoDP=157; rNsEucl=101; rNSW=71; rank_mean=125.000; match_rank= a 0 0 0 0 0 0 0 157.0 2996.0 2996.0 0.0 150.0 2996.0 0 c 0 0 0 0 0 0 0 1634.0 338.0 290.0 29.0 258.0 34.0 0 g 0 0 0 0 0 0 0 109.0 325.0 130.0 118.0 293.0 106.0 0 t 0 0 0 0 0 0 0 1362.0 57.0 89.0 2996.0 2996.0 148.0 0
MA0882.2_shift7 (DLX6)		0.773	0.422	3.006	0.866	0.892	112	167	146	119	84	125.600		; cluster_2 versus MA0882.2 (DLX6); m=23/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 125.6; -------yAATTA- ; cor=0.773; Ncor=0.422; logoDP=3.006; NsEucl=0.866; NSW=0.892; rcor=112; rNcor=167; rlogoDP=146; rNsEucl=119; rNSW=84; rank_mean=125.600; match_rank= a 0 0 0 0 0 0 0 137.0 2623.0 2623.0 12.0 48.0 2623.0 0 c 0 0 0 0 0 0 0 1410.0 273.0 124.0 0.0 140.0 30.0 0 g 0 0 0 0 0 0 0 21.0 143.0 0.0 0.0 68.0 16.0 0 t 0 0 0 0 0 0 0 1212.0 184.0 56.0 2623.0 2623.0 193.0 0
MA0890.2_shift7 (GBX2)		0.781	0.426	3.772	0.859	0.881	92	160	130	147	107	127.200		; cluster_2 versus MA0890.2 (GBX2); m=24/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 127.2; -------yAATTA- ; cor=0.781; Ncor=0.426; logoDP=3.772; NsEucl=0.859; NSW=0.881; rcor=92; rNcor=160; rlogoDP=130; rNsEucl=147; rNSW=107; rank_mean=127.200; match_rank= a 0 0 0 0 0 0 0 699.0 27366.0 27366.0 0.0 318.0 27366.0 0 c 0 0 0 0 0 0 0 15511.0 570.0 250.0 61.0 570.0 73.0 0 g 0 0 0 0 0 0 0 106.0 1113.0 114.0 65.0 673.0 30.0 0 t 0 0 0 0 0 0 0 11855.0 227.0 25.0 27366.0 27366.0 650.0 0
MA0710.2_rc_shift7 (NOTO_rc)		0.735	0.468	1.433	0.871	0.884	160	113	167	100	102	128.400		; cluster_2 versus MA0710.2_rc (NOTO_rc); m=25/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 128.4; -------TAATKar ; cor=0.735; Ncor=0.468; logoDP=1.433; NsEucl=0.871; NSW=0.884; rcor=160; rNcor=113; rlogoDP=167; rNsEucl=100; rNSW=102; rank_mean=128.400; match_rank= a 0 0 0 0 0 0 0 1904.0 21405.0 21405.0 0.0 139.0 21405.0 7419.0 c 0 0 0 0 0 0 0 2057.0 422.0 0.0 0.0 0.0 573.0 617.0 g 0 0 0 0 0 0 0 0.0 62.0 0.0 0.0 6310.0 4001.0 13986.0 t 0 0 0 0 0 0 0 21405.0 374.0 0.0 21405.0 15096.0 7097.0 774.0
MA0709.2_shift7 (Msx3)		0.780	0.425	3.831	0.858	0.879	95	161	125	154	111	129.200		; cluster_2 versus MA0709.2 (Msx3); m=26/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 129.2; -------yAATTA- ; cor=0.780; Ncor=0.425; logoDP=3.831; NsEucl=0.858; NSW=0.879; rcor=95; rNcor=161; rlogoDP=125; rNsEucl=154; rNSW=111; rank_mean=129.200; match_rank= a 0 0 0 0 0 0 0 312.0 8380.0 8380.0 0.0 121.0 8380.0 0 c 0 0 0 0 0 0 0 5798.0 160.0 89.0 0.0 215.0 59.0 0 g 0 0 0 0 0 0 0 29.0 237.0 38.0 0.0 105.0 88.0 0 t 0 0 0 0 0 0 0 2582.0 94.0 5.0 8380.0 8380.0 213.0 0
MA0722.2_rc_shift7 (VAX1_rc)		0.710	0.452	1.174	0.877	0.894	182	135	174	80	79	130.000		; cluster_2 versus MA0722.2_rc (VAX1_rc); m=27/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 130; -------TaATTAr ; cor=0.710; Ncor=0.452; logoDP=1.174; NsEucl=0.877; NSW=0.894; rcor=182; rNcor=135; rlogoDP=174; rNsEucl=80; rNSW=79; rank_mean=130.000; match_rank= a 0 0 0 0 0 0 0 398.0 5253.0 5253.0 133.0 302.0 5253.0 2479.0 c 0 0 0 0 0 0 0 1332.0 1951.0 213.0 46.0 189.0 101.0 455.0 g 0 0 0 0 0 0 0 87.0 321.0 86.0 153.0 863.0 995.0 2775.0 t 0 0 0 0 0 0 0 5253.0 508.0 297.0 5253.0 5253.0 679.0 447.0
MA0654.2_shift7 (ISX)		0.778	0.424	4.036	0.855	0.874	99	162	116	165	120	132.400		; cluster_2 versus MA0654.2 (ISX); m=28/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 132.4; -------yAATTA- ; cor=0.778; Ncor=0.424; logoDP=4.036; NsEucl=0.855; NSW=0.874; rcor=99; rNcor=162; rlogoDP=116; rNsEucl=165; rNSW=120; rank_mean=132.400; match_rank= a 0 0 0 0 0 0 0 10.0 2065.0 2065.0 0.0 0.0 2065.0 0 c 0 0 0 0 0 0 0 1003.0 48.0 16.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 0.0 5.0 0.0 0.0 24.0 0.0 0 t 0 0 0 0 0 0 0 1061.0 24.0 10.0 2065.0 2065.0 49.0 0
MA0666.3_shift7 (MSX1)		0.776	0.424	3.942	0.856	0.876	105	163	120	162	118	133.600		; cluster_2 versus MA0666.3 (MSX1); m=29/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 133.6; -------yAATTA- ; cor=0.776; Ncor=0.424; logoDP=3.942; NsEucl=0.856; NSW=0.876; rcor=105; rNcor=163; rlogoDP=120; rNsEucl=162; rNSW=118; rank_mean=133.600; match_rank= a 0 0 0 0 0 0 0 227.0 5064.0 5064.0 0.0 0.0 5064.0 0 c 0 0 0 0 0 0 0 5064.0 125.0 42.0 0.0 280.0 0.0 0 g 0 0 0 0 0 0 0 0.0 146.0 0.0 0.0 0.0 159.0 0 t 0 0 0 0 0 0 0 2415.0 0.0 0.0 5064.0 5064.0 0.0 0
MA0621.2_rc_shift7 (mix-a_rc)		0.759	0.483	2.268	0.858	0.859	134	84	158	151	148	135.000		; cluster_2 versus MA0621.2_rc (mix-a_rc); m=30/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 135; -------TAATTAa ; cor=0.759; Ncor=0.483; logoDP=2.268; NsEucl=0.858; NSW=0.859; rcor=134; rNcor=84; rlogoDP=158; rNsEucl=151; rNSW=148; rank_mean=135.000; match_rank= a 0 0 0 0 0 0 0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 c 0 0 0 0 0 0 0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 g 0 0 0 0 0 0 0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 t 0 0 0 0 0 0 0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0
MA0726.2_rc_shift7 (VSX2_rc)		0.726	0.462	1.707	0.867	0.876	170	121	162	116	117	137.200		; cluster_2 versus MA0726.2_rc (VSX2_rc); m=31/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 137.2; -------TAATTAr ; cor=0.726; Ncor=0.462; logoDP=1.707; NsEucl=0.867; NSW=0.876; rcor=170; rNcor=121; rlogoDP=162; rNsEucl=116; rNSW=117; rank_mean=137.200; match_rank= a 0 0 0 0 0 0 0 1014.0 13809.0 13809.0 63.0 402.0 13809.0 4255.0 c 0 0 0 0 0 0 0 2109.0 447.0 92.0 123.0 343.0 363.0 445.0 g 0 0 0 0 0 0 0 321.0 567.0 186.0 124.0 397.0 2725.0 9554.0 t 0 0 0 0 0 0 0 13809.0 626.0 118.0 13809.0 13809.0 1080.0 427.0
MA0868.3_shift5 (SOX8)		0.725	0.461	4.885	0.857	0.857	171	122	84	158	154	137.800		; cluster_2 versus MA0868.3 (SOX8); m=32/41; ncol2=7; w=0; offset=2; strand=D; shift=5; score= 137.8; -----AACAATr-- ; cor=0.725; Ncor=0.461; logoDP=4.885; NsEucl=0.857; NSW=0.857; rcor=171; rNcor=122; rlogoDP=84; rNsEucl=158; rNSW=154; rank_mean=137.800; match_rank= a 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 0 c 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 0 g 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 0 t 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0 0
MA0708.3_shift7 (MSX2)		0.769	0.420	3.772	0.856	0.876	119	169	129	163	119	139.800		; cluster_2 versus MA0708.3 (MSX2); m=33/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 139.8; -------YAATTA- ; cor=0.769; Ncor=0.420; logoDP=3.772; NsEucl=0.856; NSW=0.876; rcor=119; rNcor=169; rlogoDP=129; rNsEucl=163; rNSW=119; rank_mean=139.800; match_rank= a 0 0 0 0 0 0 0 220.0 6353.0 6353.0 0.0 62.0 6353.0 0 c 0 0 0 0 0 0 0 6353.0 175.0 112.0 0.0 600.0 0.0 0 g 0 0 0 0 0 0 0 0.0 259.0 0.0 0.0 0.0 243.0 0 t 0 0 0 0 0 0 0 2737.0 0.0 0.0 6353.0 6353.0 0.0 0
MA0704.2_rc_shift7 (Lhx4_rc)		0.752	0.410	2.882	0.862	0.886	144	178	150	133	97	140.400		; cluster_2 versus MA0704.2_rc (Lhx4_rc); m=34/41; ncol2=6; w=0; offset=4; strand=R; shift=7; score= 140.4; -------TAATTA- ; cor=0.752; Ncor=0.410; logoDP=2.882; NsEucl=0.862; NSW=0.886; rcor=144; rNcor=178; rlogoDP=150; rNsEucl=133; rNSW=97; rank_mean=140.400; match_rank= a 0 0 0 0 0 0 0 135.0 2896.0 2896.0 155.0 255.0 2896.0 0 c 0 0 0 0 0 0 0 316.0 57.0 0.0 0.0 309.0 0.0 0 g 0 0 0 0 0 0 0 39.0 446.0 0.0 0.0 428.0 912.0 0 t 0 0 0 0 0 0 0 2896.0 0.0 0.0 2896.0 2896.0 217.0 0
MA0125.2_rc_shift7 (Nobox_rc)		0.756	0.412	3.440	0.857	0.878	136	174	138	157	113	143.600		; cluster_2 versus MA0125.2_rc (Nobox_rc); m=35/41; ncol2=6; w=0; offset=4; strand=R; shift=7; score= 143.6; -------yAATTA- ; cor=0.756; Ncor=0.412; logoDP=3.440; NsEucl=0.857; NSW=0.878; rcor=136; rNcor=174; rlogoDP=138; rNsEucl=157; rNSW=113; rank_mean=143.600; match_rank= a 0 0 0 0 0 0 0 1.0 32.0 34.0 0.0 2.0 37.0 0 c 0 0 0 0 0 0 0 22.0 4.0 2.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 1.0 0 t 0 0 0 0 0 0 0 15.0 2.0 1.0 38.0 36.0 0.0 0
MA0879.3_shift7 (DLX1)		0.746	0.407	2.896	0.860	0.883	149	180	149	143	104	145.000		; cluster_2 versus MA0879.3 (DLX1); m=36/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 145; -------yAATTA- ; cor=0.746; Ncor=0.407; logoDP=2.896; NsEucl=0.860; NSW=0.883; rcor=149; rNcor=180; rlogoDP=149; rNsEucl=143; rNSW=104; rank_mean=145.000; match_rank= a 0 0 0 0 0 0 0 265.0 6231.0 6231.0 0.0 0.0 6231.0 0 c 0 0 0 0 0 0 0 4059.0 1212.0 222.0 0.0 639.0 0.0 0 g 0 0 0 0 0 0 0 0.0 954.0 0.0 0.0 155.0 168.0 0 t 0 0 0 0 0 0 0 2171.0 540.0 0.0 6231.0 6231.0 614.0 0
MA0702.3_rc_shift7 (LMX1A_rc)		0.745	0.474	2.228	0.855	0.854	150	98	159	164	160	146.200		; cluster_2 versus MA0702.3_rc (LMX1A_rc); m=37/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 146.2; -------TAATTAr ; cor=0.745; Ncor=0.474; logoDP=2.228; NsEucl=0.855; NSW=0.854; rcor=150; rNcor=98; rlogoDP=159; rNsEucl=164; rNSW=160; rank_mean=146.200; match_rank= a 0 0 0 0 0 0 0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 c 0 0 0 0 0 0 0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 g 0 0 0 0 0 0 0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 t 0 0 0 0 0 0 0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0
MA0644.3_rc_shift7 (ESX1_rc)		0.711	0.452	1.814	0.861	0.865	181	133	161	138	133	149.200		; cluster_2 versus MA0644.3_rc (ESX1_rc); m=38/41; ncol2=7; w=0; offset=4; strand=R; shift=7; score= 149.2; -------TAATTrr ; cor=0.711; Ncor=0.452; logoDP=1.814; NsEucl=0.861; NSW=0.865; rcor=181; rNcor=133; rlogoDP=161; rNsEucl=138; rNSW=133; rank_mean=149.200; match_rank= a 0 0 0 0 0 0 0 557.0 19670.0 19670.0 0.0 181.0 12075.0 7690.0 c 0 0 0 0 0 0 0 925.0 225.0 0.0 0.0 821.0 0.0 2110.0 g 0 0 0 0 0 0 0 0.0 1009.0 0.0 95.0 634.0 7595.0 11980.0 t 0 0 0 0 0 0 0 19670.0 47.0 0.0 19670.0 19670.0 589.0 1070.0
MA0612.3_shift7 (EMX1)		0.753	0.411	3.792	0.849	0.864	142	177	128	176	139	152.400		; cluster_2 versus MA0612.3 (EMX1); m=39/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 152.4; -------TAATTA- ; cor=0.753; Ncor=0.411; logoDP=3.792; NsEucl=0.849; NSW=0.864; rcor=142; rNcor=177; rlogoDP=128; rNsEucl=176; rNSW=139; rank_mean=152.400; match_rank= a 0 0 0 0 0 0 0 19.0 9544.0 9544.0 0.0 0.0 9544.0 0 c 0 0 0 0 0 0 0 2263.0 1235.0 0.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 933.0 0.0 0 t 0 0 0 0 0 0 0 7281.0 0.0 0.0 9544.0 9544.0 0.0 0
MA0886.2_shift7 (EMX2)		0.752	0.410	3.576	0.850	0.866	145	179	137	175	132	153.600		; cluster_2 versus MA0886.2 (EMX2); m=40/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 153.6; -------TAATTA- ; cor=0.752; Ncor=0.410; logoDP=3.576; NsEucl=0.850; NSW=0.866; rcor=145; rNcor=179; rlogoDP=137; rNsEucl=175; rNSW=132; rank_mean=153.600; match_rank= a 0 0 0 0 0 0 0 834.0 37262.0 37262.0 0.0 0.0 37262.0 0 c 0 0 0 0 0 0 0 7761.0 4938.0 0.0 0.0 0.0 0.0 0 g 0 0 0 0 0 0 0 0.0 678.0 0.0 0.0 4025.0 0.0 0 t 0 0 0 0 0 0 0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 0
MA0700.3_shift7 (LHX2)		0.735	0.401	3.435	0.841	0.849	161	187	140	183	165	167.200		; cluster_2 versus MA0700.3 (LHX2); m=41/41; ncol2=6; w=0; offset=4; strand=D; shift=7; score= 167.2; -------CAATTA- ; cor=0.735; Ncor=0.401; logoDP=3.435; NsEucl=0.841; NSW=0.849; rcor=161; rNcor=187; rlogoDP=140; rNsEucl=183; rNSW=165; rank_mean=167.200; match_rank= a 0 0 0 0 0 0 0 44.0 5790.0 6022.0 129.0 67.0 6275.0 0 c 0 0 0 0 0 0 0 5612.0 71.0 101.0 58.0 5.0 13.0 0 g 0 0 0 0 0 0 0 37.0 52.0 77.0 64.0 5.0 6.0 0 t 0 0 0 0 0 0 0 640.0 420.0 133.0 6082.0 6256.0 39.0 0

One-to-n matrix alignment; reference matrix: cluster_6_shift2 ; 9 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_6_shift2 (cluster_6)														; cluster_6; m=0 (reference); ncol1=12; shift=2; ncol=14; --yGgGAGGCyGsa ; Alignment reference a 0 0 78 22 102 31 750 0 0 0 41 108 99 220 c 0 0 148 15 170 175 0 0 0 750 188 16 112 66 g 0 0 14 305 462 542 0 750 750 0 80 622 186 100 t 0 0 108 6 16 2 0 0 0 0 441 4 5 16
MA2341.1_rc_shift6 (FEZF2_rc)		0.897	0.598	0.373	0.919	0.947	27	6	183	6	21	48.600	29	; cluster_6 versus MA2341.1_rc (FEZF2_rc); m=1/8; ncol2=8; w=0; offset=4; strand=R; shift=6; score= 48.6; ------AGGCTGGG ; cor=0.897; Ncor=0.598; logoDP=0.373; NsEucl=0.919; NSW=0.947; rcor=27; rNcor=6; rlogoDP=183; rNsEucl=6; rNSW=21; rank_mean=48.600; match_rank=29 a 0 0 0 0 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 c 0 0 0 0 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 g 0 0 0 0 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 t 0 0 0 0 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0
MA2099.1_rc_shift4 (ZNF770_rc)		0.891	0.594	0.520	0.914	0.941	30	8	182	11	27	51.600	33	; cluster_6 versus MA2099.1_rc (ZNF770_rc); m=2/8; ncol2=8; w=0; offset=2; strand=R; shift=4; score= 51.6; ----kGAGGCyG-- ; cor=0.891; Ncor=0.594; logoDP=0.520; NsEucl=0.914; NSW=0.941; rcor=30; rNcor=8; rlogoDP=182; rNsEucl=11; rNSW=27; rank_mean=51.600; match_rank=33 a 0 0 0 0 724.0 56.0 13889.0 65.0 156.0 126.0 387.0 1052.0 0 0 c 0 0 0 0 485.0 86.0 215.0 133.0 681.0 13947.0 9119.0 374.0 0 0 g 0 0 0 0 3865.0 14154.0 140.0 14096.0 13393.0 79.0 857.0 12613.0 0 0 t 0 0 0 0 9257.0 35.0 87.0 37.0 101.0 179.0 3968.0 292.0 0 0
MA1596.1_rc_shift0 (ZNF460_rc)		0.870	0.653	0.602	0.924	0.931	38	2	180	4	37	52.200	34	; cluster_6 versus MA1596.1_rc (ZNF460_rc); m=3/8; ncol2=16; w=-2; offset=-2; strand=R; shift=0; score= 52.2; CyyGGGAGGCkGAG ; cor=0.870; Ncor=0.653; logoDP=0.602; NsEucl=0.924; NSW=0.931; rcor=38; rNcor=2; rlogoDP=180; rNsEucl=4; rNSW=37; rank_mean=52.200; match_rank=34 a 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 c 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 g 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 t 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0
MA1965.2_rc_shift3 (SP5_rc)		0.964	0.482	0.216	0.930	0.970	3	86	185	3	3	56.000	38	; cluster_6 versus MA1965.2_rc (SP5_rc); m=4/8; ncol2=6; w=0; offset=1; strand=R; shift=3; score= 56; ---GGGAGG----- ; cor=0.964; Ncor=0.482; logoDP=0.216; NsEucl=0.930; NSW=0.970; rcor=3; rNcor=86; rlogoDP=185; rNsEucl=3; rNSW=3; rank_mean=56.000; match_rank=38 a 0 0 0 0.0 0.0 0.0 20465.0 0.0 4.0 0 0 0 0 0 c 0 0 0 92.0 234.0 0.0 231.0 403.0 3.0 0 0 0 0 0 g 0 0 0 20604.0 20451.0 20649.0 0.0 20286.0 20683.0 0 0 0 0 0 t 0 0 0 0.0 11.0 47.0 0.0 7.0 6.0 0 0 0 0 0
MA1710.2_shift5 (ZNF257)		0.723	0.500	6.705	0.877	0.863	173	47	20	81	141	92.400		; cluster_6 versus MA1710.2 (ZNF257); m=5/8; ncol2=10; w=0; offset=3; strand=D; shift=5; score= 92.4; -----GAGGcrAGr ; cor=0.723; Ncor=0.500; logoDP=6.705; NsEucl=0.877; NSW=0.863; rcor=173; rNcor=47; rlogoDP=20; rNsEucl=81; rNSW=141; rank_mean=92.400; match_rank= a 0 0 0 0 0 1.0 924.0 1.0 1.0 239.0 549.0 832.0 1.0 434.0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 637.0 55.0 1.0 1.0 85.0 g 0 0 0 0 0 997.0 1.0 997.0 997.0 1.0 396.0 166.0 997.0 480.0 t 0 0 0 0 0 1.0 74.0 1.0 1.0 124.0 1.0 1.0 1.0 1.0
MA0146.3_rc_shift6 (Zfx_rc)		0.779	0.445	1.419	0.882	0.889	98	137	170	58	90	110.600		; cluster_6 versus MA0146.3_rc (Zfx_rc); m=6/8; ncol2=10; w=0; offset=4; strand=R; shift=6; score= 110.6; ------AGGCCbvG ; cor=0.779; Ncor=0.445; logoDP=1.419; NsEucl=0.882; NSW=0.889; rcor=98; rNcor=137; rlogoDP=170; rNsEucl=58; rNSW=90; rank_mean=110.600; match_rank= a 0 0 0 0 0 0 480.0 1.0 0.0 1.0 1.0 15.0 144.0 112.0 c 0 0 0 0 0 0 0.0 0.0 0.0 477.0 470.0 122.0 183.0 2.0 g 0 0 0 0 0 0 1.0 480.0 481.0 3.0 2.0 153.0 124.0 361.0 t 0 0 0 0 0 0 0.0 0.0 0.0 0.0 8.0 191.0 30.0 6.0
MA0471.3_shift7 (E2F6)		0.775	0.417	4.627	0.869	0.880	107	172	93	108	110	118.000		; cluster_6 versus MA0471.3 (E2F6); m=7/8; ncol2=8; w=0; offset=5; strand=D; shift=7; score= 118; -------GGCGGGA ; cor=0.775; Ncor=0.417; logoDP=4.627; NsEucl=0.869; NSW=0.880; rcor=107; rNcor=172; rlogoDP=93; rNsEucl=108; rNSW=110; rank_mean=118.000; match_rank= a 0 0 0 0 0 0 0 2110.0 266.0 3856.0 1173.0 338.0 354.0 29337.0 c 0 0 0 0 0 0 0 1148.0 837.0 26424.0 539.0 434.0 834.0 1171.0 g 0 0 0 0 0 0 0 29387.0 31790.0 693.0 30573.0 31973.0 31614.0 2322.0 t 0 0 0 0 0 0 0 453.0 205.0 2125.0 813.0 353.0 296.0 268.0
MA0528.3_shift3 (ZNF263)		0.755	0.441	5.937	0.854	0.851	139	141	43	167	162	130.400		; cluster_6 versus MA0528.3 (ZNF263); m=8/8; ncol2=7; w=0; offset=1; strand=D; shift=3; score= 130.4; ---GGGAGGA---- ; cor=0.755; Ncor=0.441; logoDP=5.937; NsEucl=0.854; NSW=0.851; rcor=139; rNcor=141; rlogoDP=43; rNsEucl=167; rNSW=162; rank_mean=130.400; match_rank= a 0 0 0 1610.0 789.0 950.0 53900.0 830.0 695.0 52499.0 0 0 0 0 c 0 0 0 1659.0 1544.0 972.0 1660.0 966.0 2190.0 1758.0 0 0 0 0 g 0 0 0 51804.0 52818.0 53435.0 163.0 52875.0 52741.0 1448.0 0 0 0 0 t 0 0 0 1270.0 1192.0 986.0 620.0 1672.0 717.0 638.0 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_4_shift0 ; 7 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_4_shift0 (cluster_4)														; cluster_4; m=0 (reference); ncol1=13; shift=0; ncol=13; sGCtCCTCMCTyC ; Alignment reference a 18 83 137 1653 1 0 29 0 4672 28 179 44 16 c 716 27 6268 964 6599 6703 11 6620 1806 6518 946 1730 4498 g 1138 1714 122 273 103 1 15 75 53 118 5 312 122 t 23 71 179 3816 3 2 6651 11 175 42 3681 2725 175
MA1652.2_rc_shift5 (ZKSCAN5_rc)		0.906	0.517	0.834	0.919	0.948	17	35	176	5	18	50.200	31	; cluster_4 versus MA1652.2_rc (ZKSCAN5_rc); m=1/6; ncol2=9; w=0; offset=5; strand=R; shift=5; score= 50.2; -----cTCACyTC ; cor=0.906; Ncor=0.517; logoDP=0.834; NsEucl=0.919; NSW=0.948; rcor=17; rNcor=35; rlogoDP=176; rNsEucl=5; rNSW=18; rank_mean=50.200; match_rank=31 a 0 0 0 0 0 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 c 0 0 0 0 0 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 g 0 0 0 0 0 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 t 0 0 0 0 0 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0
MA1965.2_shift4 (SP5)		0.881	0.407	8.859	0.882	0.916	33	181	1	59	49	64.600	48	; cluster_4 versus MA1965.2 (SP5); m=2/6; ncol2=6; w=0; offset=4; strand=D; shift=4; score= 64.6; ----CCTCCC--- ; cor=0.881; Ncor=0.407; logoDP=8.859; NsEucl=0.882; NSW=0.916; rcor=33; rNcor=181; rlogoDP=1; rNsEucl=59; rNSW=49; rank_mean=64.600; match_rank=48 a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0 0
MA1653.2_shift2 (ZNF148)		0.733	0.564	7.960	0.881	0.859	164	12	6	62	149	78.600		; cluster_4 versus MA1653.2 (ZNF148); m=3/6; ncol2=10; w=0; offset=2; strand=D; shift=2; score= 78.6; --CCCCTCCCcc- ; cor=0.733; Ncor=0.564; logoDP=7.960; NsEucl=0.881; NSW=0.859; rcor=164; rNcor=12; rlogoDP=6; rNsEucl=62; rNSW=149; rank_mean=78.600; match_rank= a 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA0528.3_rc_shift3 (ZNF263_rc)		0.869	0.468	0.233	0.893	0.920	39	111	184	39	44	83.400		; cluster_4 versus MA0528.3_rc (ZNF263_rc); m=4/6; ncol2=7; w=0; offset=3; strand=R; shift=3; score= 83.4; ---TCCTCCC--- ; cor=0.869; Ncor=0.468; logoDP=0.233; NsEucl=0.893; NSW=0.920; rcor=39; rNcor=111; rlogoDP=184; rNsEucl=39; rNSW=44; rank_mean=83.400; match_rank= a 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0 0 0 c 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0 0 0 g 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0 0 0 t 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0 0 0
MA1522.2_shift2 (MAZ)		0.775	0.477	8.623	0.867	0.859	108	96	2	112	147	93.000		; cluster_4 versus MA1522.2 (MAZ); m=5/6; ncol2=8; w=0; offset=2; strand=D; shift=2; score= 93; --CCCCTCCc--- ; cor=0.775; Ncor=0.477; logoDP=8.623; NsEucl=0.867; NSW=0.859; rcor=108; rNcor=96; rlogoDP=2; rNsEucl=112; rNSW=147; rank_mean=93.000; match_rank= a 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA0685.2_rc_shift2 (SP4_rc)		0.702	0.486	0.102	0.862	0.830	187	81	187	132	186	154.600		; cluster_4 versus MA0685.2_rc (SP4_rc); m=6/6; ncol2=9; w=0; offset=2; strand=R; shift=2; score= 154.6; --CyCCKCCCc-- ; cor=0.702; Ncor=0.486; logoDP=0.102; NsEucl=0.862; NSW=0.830; rcor=187; rNcor=81; rlogoDP=187; rNsEucl=132; rNSW=186; rank_mean=154.600; match_rank= a 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

One-to-n matrix alignment; reference matrix: cluster_9_shift6 ; 26 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_9_shift6 (cluster_9)														; cluster_9; m=0 (reference); ncol1=10; shift=6; ncol=16; ------GTAGACATGG ; Alignment reference a 0 0 0 0 0 0 15 2 173 0 173 0 173 0 3 7 c 0 0 0 0 0 0 2 20 0 0 0 173 0 0 4 1 g 0 0 0 0 0 0 136 21 0 173 0 0 0 0 149 135 t 0 0 0 0 0 0 20 130 0 0 0 0 0 173 17 30
MA0148.5_shift6 (FOXA1)		0.792	0.634	6.816	0.874	0.873	80	3	18	91	121	62.600	44	; cluster_9 versus MA0148.5 (FOXA1); m=1/25; ncol2=8; w=0; offset=0; strand=D; shift=6; score= 62.6; ------GTAAACAT-- ; cor=0.792; Ncor=0.634; logoDP=6.816; NsEucl=0.874; NSW=0.873; rcor=80; rNcor=3; rlogoDP=18; rNsEucl=91; rNSW=121; rank_mean=62.600; match_rank=44 a 0 0 0 0 0 0 23286.0 11061.0 297679.0 294900.0 312906.0 7396.0 308904.0 42299.0 0 0 c 0 0 0 0 0 0 5935.0 13932.0 14648.0 13410.0 2452.0 272943.0 3674.0 23038.0 0 0 g 0 0 0 0 0 0 281612.0 6092.0 5243.0 3774.0 3652.0 4805.0 3226.0 27283.0 0 0 t 0 0 0 0 0 0 11970.0 291718.0 5233.0 10719.0 3793.0 37659.0 6999.0 230183.0 0 0
MA1602.2_rc_shift2 (ZSCAN29_rc)		0.902	0.451	0.594	0.907	0.939	22	136	181	22	28	77.800		; cluster_9 versus MA1602.2_rc (ZSCAN29_rc); m=2/25; ncol2=11; w=-4; offset=-4; strand=R; shift=2; score= 77.8; --CyGyGTAGACr--- ; cor=0.902; Ncor=0.451; logoDP=0.594; NsEucl=0.907; NSW=0.939; rcor=22; rNcor=136; rlogoDP=181; rNsEucl=22; rNSW=28; rank_mean=77.800; match_rank= a 0 0 44.0 175.0 12.0 0.0 155.0 4.0 949.0 0.0 977.0 0.0 310.0 0 0 0 c 0 0 786.0 310.0 24.0 350.0 0.0 0.0 0.0 0.0 4.0 977.0 124.0 0 0 0 g 0 0 40.0 207.0 961.0 0.0 838.0 4.0 48.0 993.0 16.0 0.0 497.0 0 0 0 t 0 0 127.0 306.0 0.0 647.0 4.0 989.0 0.0 4.0 0.0 20.0 68.0 0 0 0
MA1103.3_shift6 (FOXK2)		0.786	0.550	6.152	0.864	0.870	86	15	36	128	127	78.400		; cluster_9 versus MA1103.3 (FOXK2); m=3/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 78.4; ------GTAAACA--- ; cor=0.786; Ncor=0.550; logoDP=6.152; NsEucl=0.864; NSW=0.870; rcor=86; rNcor=15; rlogoDP=36; rNsEucl=128; rNSW=127; rank_mean=78.400; match_rank= a 0 0 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 0 0 c 0 0 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 0 0 g 0 0 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 0 0 t 0 0 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0 0 0
MA0480.3_shift6 (Foxo1)		0.782	0.547	5.712	0.863	0.870	91	17	54	129	128	83.800		; cluster_9 versus MA0480.3 (Foxo1); m=4/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 83.8; ------GTAAACA--- ; cor=0.782; Ncor=0.547; logoDP=5.712; NsEucl=0.863; NSW=0.870; rcor=91; rNcor=17; rlogoDP=54; rNsEucl=129; rNSW=128; rank_mean=83.800; match_rank= a 0 0 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 c 0 0 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 g 0 0 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 t 0 0 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0
MA0852.3_shift6 (FOXK1)		0.777	0.544	6.756	0.859	0.861	104	21	19	148	144	87.200		; cluster_9 versus MA0852.3 (FOXK1); m=5/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 87.2; ------GTAAACA--- ; cor=0.777; Ncor=0.544; logoDP=6.756; NsEucl=0.859; NSW=0.861; rcor=104; rNcor=21; rlogoDP=19; rNsEucl=148; rNSW=144; rank_mean=87.200; match_rank= a 0 0 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 c 0 0 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 g 0 0 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 t 0 0 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0
MA0481.4_shift6 (FOXP1)		0.778	0.545	5.850	0.862	0.866	100	19	50	137	131	87.400		; cluster_9 versus MA0481.4 (FOXP1); m=6/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 87.4; ------GTAAACA--- ; cor=0.778; Ncor=0.545; logoDP=5.850; NsEucl=0.862; NSW=0.866; rcor=100; rNcor=19; rlogoDP=50; rNsEucl=137; rNSW=131; rank_mean=87.400; match_rank= a 0 0 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 0 0 c 0 0 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 0 0 g 0 0 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 0 0 t 0 0 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0 0 0
MA1683.2_shift6 (FOXA3)		0.777	0.544	5.858	0.861	0.865	103	20	49	139	134	89.000		; cluster_9 versus MA1683.2 (FOXA3); m=7/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 89; ------GTAAACA--- ; cor=0.777; Ncor=0.544; logoDP=5.858; NsEucl=0.861; NSW=0.865; rcor=103; rNcor=20; rlogoDP=49; rNsEucl=139; rNSW=134; rank_mean=89.000; match_rank= a 0 0 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 0 0 c 0 0 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 0 0 g 0 0 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 0 0 t 0 0 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0 0 0
MA2118.1_shift5 (FOXS1)		0.779	0.496	6.309	0.861	0.864	97	59	29	140	135	92.000		; cluster_9 versus MA2118.1 (FOXS1); m=8/25; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score= 92; -----tGTAAACA--- ; cor=0.779; Ncor=0.496; logoDP=6.309; NsEucl=0.861; NSW=0.864; rcor=97; rNcor=59; rlogoDP=29; rNsEucl=140; rNSW=135; rank_mean=92.000; match_rank= a 0 0 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 c 0 0 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 g 0 0 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 t 0 0 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0
MA0157.4_shift6 (Foxo3)		0.774	0.542	6.024	0.860	0.863	111	22	42	145	142	92.400		; cluster_9 versus MA0157.4 (Foxo3); m=9/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 92.4; ------GTAAACA--- ; cor=0.774; Ncor=0.542; logoDP=6.024; NsEucl=0.860; NSW=0.863; rcor=111; rNcor=22; rlogoDP=42; rNsEucl=145; rNSW=142; rank_mean=92.400; match_rank= a 0 0 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 c 0 0 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 g 0 0 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 t 0 0 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0
MA2117.1_shift6 (FOXP4)		0.773	0.541	5.650	0.861	0.864	113	23	57	142	137	94.400		; cluster_9 versus MA2117.1 (FOXP4); m=10/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 94.4; ------GTAAACA--- ; cor=0.773; Ncor=0.541; logoDP=5.650; NsEucl=0.861; NSW=0.864; rcor=113; rNcor=23; rlogoDP=57; rNsEucl=142; rNSW=137; rank_mean=94.400; match_rank= a 0 0 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 0 0 c 0 0 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 0 0 g 0 0 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 0 0 t 0 0 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0 0 0
MA1606.2_shift6 (Foxf1)		0.767	0.537	6.622	0.858	0.858	123	26	22	155	152	95.600		; cluster_9 versus MA1606.2 (Foxf1); m=11/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 95.6; ------rTAAACA--- ; cor=0.767; Ncor=0.537; logoDP=6.622; NsEucl=0.858; NSW=0.858; rcor=123; rNcor=26; rlogoDP=22; rNsEucl=155; rNSW=152; rank_mean=95.600; match_rank= a 0 0 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 c 0 0 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 g 0 0 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 t 0 0 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0
MA0795.1_shift3 (SMAD3)		0.800	0.431	7.871	0.864	0.871	70	156	7	124	124	96.200		; cluster_9 versus MA0795.1 (SMAD3); m=12/25; ncol2=10; w=-3; offset=-3; strand=D; shift=3; score= 96.2; ---yGTCTAGACA--- ; cor=0.800; Ncor=0.431; logoDP=7.871; NsEucl=0.864; NSW=0.871; rcor=70; rNcor=156; rlogoDP=7; rNsEucl=124; rNSW=124; rank_mean=96.200; match_rank= a 0 0 0 554.0 20.0 103.0 9.0 0.0 3491.0 0.0 3491.0 20.0 3491.0 0 0 0 c 0 0 0 1829.0 16.0 29.0 3491.0 46.0 30.0 10.0 199.0 3491.0 434.0 0 0 0 g 0 0 0 87.0 3491.0 83.0 11.0 31.0 22.0 3491.0 5.0 10.0 316.0 0 0 0 t 0 0 0 1662.0 18.0 3491.0 6.0 3491.0 0.0 3.0 56.0 20.0 758.0 0 0 0
MA0849.1_shift6 (FOXO6)		0.768	0.538	7.483	0.854	0.851	121	25	9	168	163	97.200		; cluster_9 versus MA0849.1 (FOXO6); m=13/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 97.2; ------GTAAACA--- ; cor=0.768; Ncor=0.538; logoDP=7.483; NsEucl=0.854; NSW=0.851; rcor=121; rNcor=25; rlogoDP=9; rNsEucl=168; rNSW=163; rank_mean=97.200; match_rank= a 0 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 0 0 0 c 0 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 0 0 0 g 0 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 0 0 0 t 0 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0 0 0 0
MA0047.4_shift5 (FOXA2)		0.776	0.494	6.119	0.860	0.864	106	63	37	144	140	98.000		; cluster_9 versus MA0047.4 (FOXA2); m=14/25; ncol2=8; w=-1; offset=-1; strand=D; shift=5; score= 98; -----wGTAAACA--- ; cor=0.776; Ncor=0.494; logoDP=6.119; NsEucl=0.860; NSW=0.864; rcor=106; rNcor=63; rlogoDP=37; rNsEucl=144; rNSW=140; rank_mean=98.000; match_rank= a 0 0 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 c 0 0 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 g 0 0 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 t 0 0 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0
MA0031.2_shift6 (FOXD1)		0.763	0.534	6.972	0.852	0.847	130	27	12	170	169	101.600		; cluster_9 versus MA0031.2 (FOXD1); m=15/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 101.6; ------GTAAACA--- ; cor=0.763; Ncor=0.534; logoDP=6.972; NsEucl=0.852; NSW=0.847; rcor=130; rNcor=27; rlogoDP=12; rNsEucl=170; rNSW=169; rank_mean=101.600; match_rank= a 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 0 0 c 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 0 0 g 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 0 0 t 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0 0 0
MA0042.2_shift6 (FOXI1)		0.759	0.532	6.846	0.852	0.846	132	29	16	172	172	104.200		; cluster_9 versus MA0042.2 (FOXI1); m=16/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 104.2; ------GTAAACA--- ; cor=0.759; Ncor=0.532; logoDP=6.846; NsEucl=0.852; NSW=0.846; rcor=132; rNcor=29; rlogoDP=16; rNsEucl=172; rNSW=172; rank_mean=104.200; match_rank= a 0 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 0 0 c 0 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 0 0 g 0 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 0 0 t 0 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0 0 0
MA1557.1_shift3 (SMAD5)		0.786	0.423	6.537	0.864	0.870	85	165	23	127	126	105.200		; cluster_9 versus MA1557.1 (SMAD5); m=17/25; ncol2=10; w=-3; offset=-3; strand=D; shift=3; score= 105.2; ---yGTCTAGACa--- ; cor=0.786; Ncor=0.423; logoDP=6.537; NsEucl=0.864; NSW=0.870; rcor=85; rNcor=165; rlogoDP=23; rNsEucl=127; rNSW=126; rank_mean=105.200; match_rank= a 0 0 0 766.0 34.0 315.0 41.0 1.0 4924.0 21.0 4924.0 22.0 4924.0 0 0 0 c 0 0 0 2395.0 16.0 108.0 4924.0 226.0 543.0 33.0 482.0 4924.0 784.0 0 0 0 g 0 0 0 337.0 4924.0 447.0 39.0 585.0 134.0 4924.0 20.0 5.0 482.0 0 0 0 t 0 0 0 2529.0 5.0 4924.0 5.0 4924.0 8.0 6.0 281.0 24.0 1408.0 0 0 0
MA0848.1_shift6 (FOXO4)		0.749	0.524	6.315	0.852	0.847	147	32	28	171	170	109.600		; cluster_9 versus MA0848.1 (FOXO4); m=18/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 109.6; ------GTAAACA--- ; cor=0.749; Ncor=0.524; logoDP=6.315; NsEucl=0.852; NSW=0.847; rcor=147; rNcor=32; rlogoDP=28; rNsEucl=171; rNSW=170; rank_mean=109.600; match_rank= a 0 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 c 0 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 g 0 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 t 0 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0
MA0613.1_shift6 (FOXG1)		0.711	0.569	8.583	0.849	0.817	179	11	3	177	187	111.400		; cluster_9 versus MA0613.1 (FOXG1); m=19/25; ncol2=8; w=0; offset=0; strand=D; shift=6; score= 111.4; ------rTAAACAw-- ; cor=0.711; Ncor=0.569; logoDP=8.583; NsEucl=0.849; NSW=0.817; rcor=179; rNcor=11; rlogoDP=3; rNsEucl=177; rNSW=187; rank_mean=111.400; match_rank= a 0 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 c 0 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 g 0 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 t 0 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0
MA0033.2_shift6 (FOXL1)		0.724	0.507	6.217	0.846	0.833	172	41	30	180	183	121.200		; cluster_9 versus MA0033.2 (FOXL1); m=20/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 121.2; ------rTAAACA--- ; cor=0.724; Ncor=0.507; logoDP=6.217; NsEucl=0.846; NSW=0.833; rcor=172; rNcor=41; rlogoDP=30; rNsEucl=180; rNSW=183; rank_mean=121.200; match_rank= a 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 c 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 g 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 t 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0
MA1108.3_shift9 (MXI1)		0.766	0.460	7.628	0.835	0.836	124	124	8	185	181	124.400		; cluster_9 versus MA1108.3 (MXI1); m=21/25; ncol2=6; w=0; offset=3; strand=D; shift=9; score= 124.4; ---------CACATG- ; cor=0.766; Ncor=0.460; logoDP=7.628; NsEucl=0.835; NSW=0.836; rcor=124; rNcor=124; rlogoDP=8; rNsEucl=185; rNSW=181; rank_mean=124.400; match_rank= a 0 0 0 0 0 0 0 0 0 109.0 21870.0 10.0 20506.0 0.0 527.0 0 c 0 0 0 0 0 0 0 0 0 21382.0 1.0 21552.0 0.0 507.0 114.0 0 g 0 0 0 0 0 0 0 0 0 97.0 170.0 18.0 1542.0 0.0 21232.0 0 t 0 0 0 0 0 0 0 0 0 460.0 7.0 468.0 0.0 21541.0 175.0 0
MA0850.1_shift6 (FOXP3)		0.731	0.511	4.639	0.852	0.848	167	38	92	169	168	126.800		; cluster_9 versus MA0850.1 (FOXP3); m=22/25; ncol2=7; w=0; offset=0; strand=D; shift=6; score= 126.8; ------rTAAACA--- ; cor=0.731; Ncor=0.511; logoDP=4.639; NsEucl=0.852; NSW=0.848; rcor=167; rNcor=38; rlogoDP=92; rNsEucl=169; rNSW=168; rank_mean=126.800; match_rank= a 0 0 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 c 0 0 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 g 0 0 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 t 0 0 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0
MA1153.2_rc_shift6 (Smad4_rc)		0.771	0.540	0.133	0.857	0.858	117	24	186	156	153	127.200		; cluster_9 versus MA1153.2_rc (Smad4_rc); m=23/25; ncol2=7; w=0; offset=0; strand=R; shift=6; score= 127.2; ------CyAGACr--- ; cor=0.771; Ncor=0.540; logoDP=0.133; NsEucl=0.857; NSW=0.858; rcor=117; rNcor=24; rlogoDP=186; rNsEucl=156; rNSW=153; rank_mean=127.200; match_rank= a 0 0 0 0 0 0 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 0 0 c 0 0 0 0 0 0 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 0 0 g 0 0 0 0 0 0 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 0 0 t 0 0 0 0 0 0 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0 0 0
MA0861.2_rc_shift0 (TP73_rc)		0.709	0.443	5.478	0.876	0.847	184	140	64	83	171	128.400		; cluster_9 versus MA0861.2_rc (TP73_rc); m=24/25; ncol2=16; w=-6; offset=-6; strand=R; shift=0; score= 128.4; rCrTGTyyrgACATGy ; cor=0.709; Ncor=0.443; logoDP=5.478; NsEucl=0.876; NSW=0.847; rcor=184; rNcor=140; rlogoDP=64; rNsEucl=83; rNSW=171; rank_mean=128.400; match_rank= a 6995.0 39.0 8476.0 2302.0 0.0 442.0 1002.0 2457.0 4242.0 2749.0 11892.0 1.0 11480.0 198.0 0.0 208.0 c 181.0 13026.0 130.0 279.0 0.0 1414.0 7797.0 3558.0 2230.0 783.0 91.0 11787.0 806.0 557.0 0.0 3304.0 g 6944.0 170.0 5965.0 143.0 11703.0 145.0 441.0 2418.0 2940.0 8161.0 2591.0 28.0 293.0 124.0 10829.0 429.0 t 993.0 16.0 256.0 10125.0 0.0 9639.0 3988.0 3488.0 2166.0 1377.0 130.0 8.0 3837.0 8760.0 0.0 6206.0
MA1607.2_shift3 (Foxl2)		0.764	0.412	5.871	0.857	0.857	126	176	47	159	155	132.600		; cluster_9 versus MA1607.2 (Foxl2); m=25/25; ncol2=10; w=-3; offset=-3; strand=D; shift=3; score= 132.6; ---waTGTAAACA--- ; cor=0.764; Ncor=0.412; logoDP=5.871; NsEucl=0.857; NSW=0.857; rcor=126; rNcor=176; rlogoDP=47; rNsEucl=159; rNSW=155; rank_mean=132.600; match_rank= a 0 0 0 6433.0 11158.0 2985.0 2607.0 1097.0 17227.0 17212.0 17146.0 282.0 15623.0 0 0 0 c 0 0 0 1576.0 2051.0 896.0 367.0 301.0 558.0 336.0 216.0 15698.0 807.0 0 0 0 g 0 0 0 1599.0 2107.0 1371.0 14648.0 419.0 112.0 187.0 411.0 151.0 401.0 0 0 0 t 0 0 0 8493.0 2785.0 12849.0 479.0 16284.0 204.0 366.0 328.0 1970.0 1270.0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_7_shift2 ; 3 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_7_shift2 (cluster_7)														; cluster_7; m=0 (reference); ncol1=11; shift=2; ncol=13; --gaCACTGCAvm ; Alignment reference a 0 0 139 309 2 662 1 134 19 3 563 202 241 c 0 0 148 113 686 6 668 3 102 690 22 262 311 g 0 0 295 136 6 24 10 58 573 2 107 223 20 t 0 0 113 137 1 3 16 500 1 0 3 8 123
MA0038.3_shift0 (GFI1)		0.764	0.529	5.823	0.886	0.884	127	30	51	47	103	71.600		; cluster_7 versus MA0038.3 (GFI1); m=1/2; ncol2=11; w=-2; offset=-2; strand=D; shift=0; score= 71.6; mAATCACdGCa-- ; cor=0.764; Ncor=0.529; logoDP=5.823; NsEucl=0.886; NSW=0.884; rcor=127; rNcor=30; rlogoDP=51; rNsEucl=47; rNSW=103; rank_mean=71.600; match_rank= a 19146.0 30168.0 30150.0 0.0 15.0 29255.0 838.0 7748.0 2294.0 292.0 16713.0 0 0 c 10155.0 2.0 0.0 0.0 30139.0 0.0 27769.0 54.0 266.0 27891.0 5221.0 0 0 g 812.0 0.0 0.0 0.0 0.0 0.0 3888.0 8349.0 27514.0 0.0 4079.0 0 0 t 565.0 0.0 1.0 30161.0 10.0 1594.0 0.0 13996.0 888.0 3702.0 4134.0 0 0
MA1593.2_shift5 (ZNF317)		0.733	0.533	4.485	0.869	0.864	163	28	100	104	138	106.600		; cluster_7 versus MA1593.2 (ZNF317); m=2/2; ncol2=8; w=0; offset=3; strand=D; shift=5; score= 106.6; -----ACAGCAGA ; cor=0.733; Ncor=0.533; logoDP=4.485; NsEucl=0.869; NSW=0.864; rcor=163; rNcor=28; rlogoDP=100; rNsEucl=104; rNSW=138; rank_mean=106.600; match_rank= a 0 0 0 0 0 9381.0 281.0 10344.0 691.0 395.0 9323.0 284.0 10825.0 c 0 0 0 0 0 357.0 10821.0 85.0 192.0 10608.0 250.0 186.0 208.0 g 0 0 0 0 0 480.0 183.0 317.0 10374.0 223.0 289.0 10730.0 206.0 t 0 0 0 0 0 1245.0 178.0 717.0 206.0 237.0 1601.0 263.0 224.0

One-to-n matrix alignment; reference matrix: cluster_3_shift1 ; 5 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_3_shift1 (cluster_3)														; cluster_3; m=0 (reference); ncol1=13; shift=1; ncol=14; -ysCCTCTsCCysg ; Alignment reference a 0 1111 253 141 95 1 0 93 16 12 212 246 190 111 c 0 2799 3910 5966 5269 145 6707 9 3599 6374 5668 2761 1227 263 g 0 224 2081 190 1273 49 1 70 3092 3 653 324 2482 2725 t 0 2575 465 412 72 6514 1 6537 2 320 176 3378 138 938
MA1653.2_shift3 (ZNF148)		0.728	0.560	6.212	0.882	0.861	168	13	31	57	143	82.400		; cluster_3 versus MA1653.2 (ZNF148); m=1/4; ncol2=10; w=0; offset=2; strand=D; shift=3; score= 82.4; ---CCCCTCCCcc- ; cor=0.728; Ncor=0.560; logoDP=6.212; NsEucl=0.882; NSW=0.861; rcor=168; rNcor=13; rlogoDP=31; rNsEucl=57; rNSW=143; rank_mean=82.400; match_rank= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA1522.2_shift3 (MAZ)		0.751	0.462	7.280	0.862	0.848	146	119	10	136	167	115.600		; cluster_3 versus MA1522.2 (MAZ); m=2/4; ncol2=8; w=0; offset=2; strand=D; shift=3; score= 115.6; ---CCCCTCCc--- ; cor=0.751; Ncor=0.462; logoDP=7.280; NsEucl=0.862; NSW=0.848; rcor=146; rNcor=119; rlogoDP=10; rNsEucl=136; rNSW=167; rank_mean=115.600; match_rank= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA1630.3_rc_shift1 (ZNF281_rc)		0.722	0.555	1.200	0.874	0.842	174	14	173	89	176	125.200		; cluster_3 versus MA1630.3_rc (ZNF281_rc); m=3/4; ncol2=10; w=0; offset=0; strand=R; shift=1; score= 125.2; -CCCCTCCCCC--- ; cor=0.722; Ncor=0.555; logoDP=1.200; NsEucl=0.874; NSW=0.842; rcor=174; rNcor=14; rlogoDP=173; rNsEucl=89; rNSW=176; rank_mean=125.200; match_rank= a 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 0 0 c 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 0 0 g 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 0 0 t 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0 0 0
MA1731.2_shift0 (ZNF768)		0.732	0.418	5.926	0.867	0.859	165	170	44	115	150	128.800		; cluster_3 versus MA1731.2 (ZNF768); m=4/4; ncol2=9; w=-1; offset=-1; strand=D; shift=0; score= 128.8; sCcTCTCTG----- ; cor=0.732; Ncor=0.418; logoDP=5.926; NsEucl=0.867; NSW=0.859; rcor=165; rNcor=170; rlogoDP=44; rNsEucl=115; rNSW=150; rank_mean=128.800; match_rank= a 211.0 29.0 43.0 34.0 1.0 6.0 1.0 1.0 1.0 0 0 0 0 0 c 478.0 768.0 655.0 39.0 950.0 6.0 987.0 1.0 25.0 0 0 0 0 0 g 268.0 62.0 179.0 11.0 29.0 43.0 11.0 11.0 973.0 0 0 0 0 0 t 43.0 141.0 123.0 917.0 20.0 945.0 1.0 987.0 1.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: cluster_8_shift0 ; 9 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_8_shift0 (cluster_8)														; cluster_8; m=0 (reference); ncol1=10; shift=0; ncol=10; mkCACATCyy ; Alignment reference a 178 1 0 465 0 465 0 0 2 51 c 283 113 465 0 465 0 0 465 180 282 g 2 125 0 0 0 0 0 0 1 6 t 2 226 0 0 0 0 465 0 282 126
MA1123.3_rc_shift3 (TWIST1_rc)		0.780	0.496	4.126	0.863	0.869	96	58	109	130	129	104.400		; cluster_8 versus MA1123.3_rc (TWIST1_rc); m=1/8; ncol2=8; w=0; offset=3; strand=R; shift=3; score= 104.4; ---aCATCTG ; cor=0.780; Ncor=0.496; logoDP=4.126; NsEucl=0.863; NSW=0.869; rcor=96; rNcor=58; rlogoDP=109; rNsEucl=130; rNSW=129; rank_mean=104.400; match_rank= a 0 0 0 18544.0 582.0 26232.0 214.0 1407.0 274.0 174.0 c 0 0 0 4069.0 25975.0 288.0 908.0 24166.0 210.0 117.0 g 0 0 0 2919.0 396.0 456.0 1687.0 1320.0 136.0 26665.0 t 0 0 0 1801.0 380.0 357.0 24524.0 440.0 26713.0 377.0
MA1652.2_rc_shift0 (ZKSCAN5_rc)		0.753	0.678	0.631	0.875	0.860	143	1	179	86	145	110.800		; cluster_8 versus MA1652.2_rc (ZKSCAN5_rc); m=2/8; ncol2=9; w=0; offset=0; strand=R; shift=0; score= 110.8; cTCACyTCC- ; cor=0.753; Ncor=0.678; logoDP=0.631; NsEucl=0.875; NSW=0.860; rcor=143; rNcor=1; rlogoDP=179; rNsEucl=86; rNSW=145; rank_mean=110.800; match_rank= a 548.0 25.0 9.0 3092.0 49.0 27.0 19.0 26.0 50.0 0 c 2034.0 62.0 3251.0 76.0 3149.0 1827.0 47.0 3236.0 3111.0 0 g 370.0 41.0 24.0 86.0 37.0 27.0 62.0 27.0 30.0 0 t 375.0 3199.0 43.0 73.0 92.0 1446.0 3199.0 38.0 136.0 0
MA1108.3_shift2 (MXI1)		0.777	0.466	8.411	0.836	0.839	102	115	5	184	178	116.800		; cluster_8 versus MA1108.3 (MXI1); m=3/8; ncol2=6; w=0; offset=2; strand=D; shift=2; score= 116.8; --CACATG-- ; cor=0.777; Ncor=0.466; logoDP=8.411; NsEucl=0.836; NSW=0.839; rcor=102; rNcor=115; rlogoDP=5; rNsEucl=184; rNSW=178; rank_mean=116.800; match_rank= a 0 0 109.0 21870.0 10.0 20506.0 0.0 527.0 0 0 c 0 0 21382.0 1.0 21552.0 0.0 507.0 114.0 0 0 g 0 0 97.0 170.0 18.0 1542.0 0.0 21232.0 0 0 t 0 0 460.0 7.0 468.0 0.0 21541.0 175.0 0 0
MA1638.2_rc_shift4 (HAND2_rc)		0.786	0.471	3.918	0.847	0.860	88	102	121	179	146	127.200		; cluster_8 versus MA1638.2_rc (HAND2_rc); m=4/8; ncol2=6; w=0; offset=4; strand=R; shift=4; score= 127.2; ----CATCTG ; cor=0.786; Ncor=0.471; logoDP=3.918; NsEucl=0.847; NSW=0.860; rcor=88; rNcor=102; rlogoDP=121; rNsEucl=179; rNSW=146; rank_mean=127.200; match_rank= a 0 0 0 0 49.0 27962.0 23.0 85.0 4.0 70.0 c 0 0 0 0 29851.0 31.0 38.0 30144.0 647.0 132.0 g 0 0 0 0 149.0 2276.0 30.0 42.0 410.0 30062.0 t 0 0 0 0 234.0 14.0 30192.0 12.0 29222.0 19.0
MA0803.1_rc_shift1 (TBX15_rc)		0.745	0.596	1.426	0.858	0.839	151	7	168	152	179	131.400		; cluster_8 versus MA0803.1_rc (TBX15_rc); m=5/8; ncol2=8; w=0; offset=1; strand=R; shift=1; score= 131.4; -TCACACCT- ; cor=0.745; Ncor=0.596; logoDP=1.426; NsEucl=0.858; NSW=0.839; rcor=151; rNcor=7; rlogoDP=168; rNsEucl=152; rNSW=179; rank_mean=131.400; match_rank= a 0 96.0 937.0 10502.0 0.0 10502.0 0.0 103.0 112.0 0 c 0 306.0 10502.0 324.0 10502.0 245.0 10502.0 10502.0 664.0 0 g 0 71.0 454.0 435.0 8.0 175.0 7.0 101.0 74.0 0 t 0 10502.0 44.0 140.0 0.0 61.0 19.0 458.0 10502.0 0
MA0805.1_rc_shift1 (TBX1_rc)		0.732	0.585	1.558	0.856	0.834	166	9	165	161	182	136.600		; cluster_8 versus MA0805.1_rc (TBX1_rc); m=6/8; ncol2=8; w=0; offset=1; strand=R; shift=1; score= 136.6; -TCACACCT- ; cor=0.732; Ncor=0.585; logoDP=1.558; NsEucl=0.856; NSW=0.834; rcor=166; rNcor=9; rlogoDP=165; rNsEucl=161; rNSW=182; rank_mean=136.600; match_rank= a 0 0.0 1039.0 11931.0 0.0 11931.0 0.0 669.0 564.0 0 c 0 18.0 11931.0 109.0 11931.0 141.0 11931.0 11931.0 1007.0 0 g 0 33.0 720.0 613.0 5.0 214.0 0.0 711.0 113.0 0 t 0 11931.0 141.0 142.0 0.0 28.0 0.0 1560.0 11931.0 0
MA0801.1_rc_shift1 (MGA_rc)		0.720	0.576	1.375	0.859	0.840	176	10	171	150	177	136.800		; cluster_8 versus MA0801.1_rc (MGA_rc); m=7/8; ncol2=8; w=0; offset=1; strand=R; shift=1; score= 136.8; -TCACACCT- ; cor=0.720; Ncor=0.576; logoDP=1.375; NsEucl=0.859; NSW=0.840; rcor=176; rNcor=10; rlogoDP=171; rNsEucl=150; rNSW=177; rank_mean=136.800; match_rank= a 0 274.0 6465.0 30489.0 11.0 30489.0 104.0 1929.0 4160.0 0 c 0 920.0 30489.0 381.0 30489.0 96.0 30489.0 30489.0 8873.0 0 g 0 110.0 1753.0 3089.0 1.0 3534.0 509.0 3737.0 1151.0 0 t 0 30489.0 689.0 1042.0 14.0 12.0 16.0 4310.0 30489.0 0
MA0698.2_rc_shift2 (ZBTB18_rc)		0.760	0.467	0.862	0.862	0.848	131	114	175	135	166	144.200		; cluster_8 versus MA0698.2_rc (ZBTB18_rc); m=8/8; ncol2=11; w=0; offset=2; strand=R; shift=2; score= 144.2; --mACATCTG ; cor=0.760; Ncor=0.467; logoDP=0.862; NsEucl=0.862; NSW=0.848; rcor=131; rNcor=114; rlogoDP=175; rNsEucl=135; rNSW=166; rank_mean=144.200; match_rank= a 0 0 8140.0 13670.0 1.0 13670.0 297.0 6.0 206.0 8.0 c 0 0 5530.0 36.0 13670.0 94.0 278.0 13670.0 33.0 3.0 g 0 0 177.0 314.0 1.0 15.0 1048.0 245.0 5.0 13670.0 t 0 0 210.0 48.0 3.0 14.0 13670.0 3.0 13670.0 21.0

One-to-n matrix alignment; reference matrix: cluster_11_shift0 ; 4 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_11_shift0 (cluster_11)														; cluster_11; m=0 (reference); ncol1=13; shift=0; ncol=13; srkCyGAGATsws ; Alignment reference a 3 109 5 3 0 0 221 0 222 0 1 96 2 c 121 3 21 218 75 1 2 0 1 3 108 6 97 g 94 106 97 2 1 224 1 225 2 0 104 17 122 t 7 7 102 2 149 0 1 0 0 222 12 106 4
MA0483.2_rc_shift2 (Gfi1B_rc)		0.709	0.545	0.731	0.880	0.855	185	18	178	67	158	121.200		; cluster_11 versus MA0483.2_rc (Gfi1B_rc); m=1/3; ncol2=10; w=0; offset=2; strand=R; shift=2; score= 121.2; --GCwGwGATTt- ; cor=0.709; Ncor=0.545; logoDP=0.731; NsEucl=0.880; NSW=0.855; rcor=185; rNcor=18; rlogoDP=178; rNsEucl=67; rNSW=158; rank_mean=121.200; match_rank= a 0 0 215.0 27.0 644.0 0.0 707.0 0.0 1395.0 0.0 0.0 95.0 0 c 0 0 76.0 1676.0 1.0 388.0 0.0 0.0 28.0 2.0 0.0 104.0 0 g 0 0 1328.0 1.0 0.0 1312.0 21.0 1761.0 338.0 0.0 0.0 438.0 0 t 0 0 142.0 57.0 1116.0 61.0 1033.0 0.0 0.0 1759.0 1761.0 1124.0 0
MA2125.1_rc_shift1 (Zfp809_rc)		0.714	0.494	4.742	0.869	0.846	178	62	87	106	173	121.200		; cluster_11 versus MA2125.1_rc (Zfp809_rc); m=2/3; ncol2=9; w=0; offset=1; strand=R; shift=1; score= 121.2; -gGCTGGGAw--- ; cor=0.714; Ncor=0.494; logoDP=4.742; NsEucl=0.869; NSW=0.846; rcor=178; rNcor=62; rlogoDP=87; rNsEucl=106; rNSW=173; rank_mean=121.200; match_rank= a 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 1578.0 690.0 0 0 0 c 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 23.0 81.0 0 0 0 g 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 41.0 66.0 0 0 0 t 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0 23.0 828.0 0 0 0
MA0035.5_rc_shift6 (GATA1_rc)		0.767	0.413	0.799	0.868	0.877	122	173	177	111	114	139.400		; cluster_11 versus MA0035.5_rc (GATA1_rc); m=3/3; ncol2=7; w=0; offset=6; strand=R; shift=6; score= 139.4; ------AGATWAG ; cor=0.767; Ncor=0.413; logoDP=0.799; NsEucl=0.868; NSW=0.877; rcor=122; rNcor=173; rlogoDP=177; rNsEucl=111; rNSW=114; rank_mean=139.400; match_rank= a 0 0 0 0 0 0 60641.0 1853.0 67766.0 1998.0 20570.0 69267.0 2744.0 c 0 0 0 0 0 0 765.0 1471.0 618.0 988.0 856.0 652.0 2712.0 g 0 0 0 0 0 0 3025.0 65937.0 1238.0 1292.0 710.0 595.0 62419.0 t 0 0 0 0 0 0 7397.0 2567.0 2206.0 67550.0 49692.0 1314.0 3953.0

One-to-n matrix alignment; reference matrix: cluster_10_shift0 ; 2 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
cluster_10_shift0 (cluster_10)														; cluster_10; m=0 (reference); ncol1=10; shift=0; ncol=10; aaATATATtt ; Alignment reference a 6 8 14 0 14 0 14 0 2 3 c 2 2 0 0 0 0 0 0 2 3 g 3 2 0 0 0 0 0 0 2 2 t 3 2 0 14 0 14 0 14 8 6
MA0108.3_shift3 (TBP)		0.703	0.492	5.350	0.851	0.845	186	67	69	174	175	134.200		; cluster_10 versus MA0108.3 (TBP); m=1/1; ncol2=7; w=0; offset=3; strand=D; shift=3; score= 134.2; ---TATAWAw ; cor=0.703; Ncor=0.492; logoDP=5.350; NsEucl=0.851; NSW=0.845; rcor=186; rNcor=67; rlogoDP=69; rNsEucl=174; rNSW=175; rank_mean=134.200; match_rank= a 0 0 0 16.0 352.0 3.0 354.0 268.0 360.0 222.0 c 0 0 0 46.0 0.0 10.0 0.0 0.0 3.0 2.0 g 0 0 0 18.0 2.0 2.0 5.0 0.0 20.0 44.0 t 0 0 0 309.0 35.0 374.0 30.0 121.0 6.0 121.0