position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/03/18/peak-motifs.2025-03-18.193137_2025-03-18.193137_ztoxci/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Cluter_negative -origin end -offset -200 -o $RSAT/public_html/tmp/www-data/2025/03/18/peak-motifs.2025-03-18.193137_2025-03-18.193137_ztoxci/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/03/18/peak-motifs.2025-03-18.193137_2025-03-18.193137_ztoxci/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/03/18/peak-motifs.2025-03-18.193137_2025-03-18.193137_ztoxci/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 866 Sum of sequence lengths 1016899 Min sequence length 0 Max sequence length 1201 Average sequence length 1174 Possible positions 1016899 Oligonucleotide statistics: Total occurrences 652502 Position interval parameters: Position interval 20 Number of windows 61 Total positions 1016899 Degrees of freedom 60 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -51 [-1019,-1000] -1009.5 819 1638 2 -50 [-999,-980] -989.5 819 16380 3 -49 [-979,-960] -969.5 819 16380 4 -48 [-959,-940] -949.5 819 16380 5 -47 [-939,-920] -929.5 820 16384 6 -46 [-919,-900] -909.5 822 16436 7 -45 [-899,-880] -889.5 823 16460 8 -44 [-879,-860] -869.5 823 16460 9 -43 [-859,-840] -849.5 824 16473 10 -42 [-839,-820] -829.5 825 16496 11 -41 [-819,-800] -809.5 826 16511 12 -40 [-799,-780] -789.5 831 16557 13 -39 [-779,-760] -769.5 833 16653 14 -38 [-759,-740] -749.5 834 16669 15 -37 [-739,-720] -729.5 835 16685 16 -36 [-719,-700] -709.5 835 16700 17 -35 [-699,-680] -689.5 836 16713 18 -34 [-679,-660] -669.5 836 16720 19 -33 [-659,-640] -649.5 838 16750 20 -32 [-639,-620] -629.5 840 16778 21 -31 [-619,-600] -609.5 840 16800 22 -30 [-599,-580] -589.5 840 16800 23 -29 [-579,-560] -569.5 840 16800 24 -28 [-559,-540] -549.5 841 16805 25 -27 [-539,-520] -529.5 841 16820 26 -26 [-519,-500] -509.5 842 16830 27 -25 [-499,-480] -489.5 844 16871 28 -24 [-479,-460] -469.5 845 16886 29 -23 [-459,-440] -449.5 847 16921 30 -22 [-439,-420] -429.5 849 16964 31 -21 [-419,-400] -409.5 849 16980 32 -20 [-399,-380] -389.5 850 16985 33 -19 [-379,-360] -369.5 851 17014 34 -18 [-359,-340] -349.5 853 17034 35 -17 [-339,-320] -329.5 853 17060 36 -16 [-319,-300] -309.5 853 17060 37 -15 [-299,-280] -289.5 854 17062 38 -14 [-279,-260] -269.5 855 17096 39 -13 [-259,-240] -249.5 855 17100 40 -12 [-239,-220] -229.5 855 17100 41 -11 [-219,-200] -209.5 857 17117 42 -10 [-199,-180] -189.5 858 17159 43 -9 [-179,-160] -169.5 858 17160 44 -8 [-159,-140] -149.5 861 17174 45 -7 [-139,-120] -129.5 861 17220 46 -6 [-119,-100] -109.5 862 17224 47 -5 [-99,-80] -89.5 862 17240 48 -4 [-79,-60] -69.5 862 17240 49 -3 [-59,-40] -49.5 863 17258 50 -2 [-39,-20] -29.5 864 17266 51 -1 [-19,0] -9.5 866 17296 52 0 [1,20] 10.5 866 17320 53 1 [21,40] 30.5 866 17320 54 2 [41,60] 50.5 866 17320 55 3 [61,80] 70.5 866 17320 56 4 [81,100] 90.5 866 17320 57 5 [101,120] 110.5 866 17320 58 6 [121,140] 130.5 866 17320 59 7 [141,160] 150.5 866 17320 60 8 [161,180] 170.5 866 17320 61 9 [181,200] 190.5 866 16454 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -1009.5 occurrences in window 1 [-1019,-1000] 11 -989.5 occurrences in window 2 [-999,-980] 12 -969.5 occurrences in window 3 [-979,-960] 13 -949.5 occurrences in window 4 [-959,-940] 14 -929.5 occurrences in window 5 [-939,-920] 15 -909.5 occurrences in window 6 [-919,-900] 16 -889.5 occurrences in window 7 [-899,-880] 17 -869.5 occurrences in window 8 [-879,-860] 18 -849.5 occurrences in window 9 [-859,-840] 19 -829.5 occurrences in window 10 [-839,-820] 20 -809.5 occurrences in window 11 [-819,-800] 21 -789.5 occurrences in window 12 [-799,-780] 22 -769.5 occurrences in window 13 [-779,-760] 23 -749.5 occurrences in window 14 [-759,-740] 24 -729.5 occurrences in window 15 [-739,-720] 25 -709.5 occurrences in window 16 [-719,-700] 26 -689.5 occurrences in window 17 [-699,-680] 27 -669.5 occurrences in window 18 [-679,-660] 28 -649.5 occurrences in window 19 [-659,-640] 29 -629.5 occurrences in window 20 [-639,-620] 30 -609.5 occurrences in window 21 [-619,-600] 31 -589.5 occurrences in window 22 [-599,-580] 32 -569.5 occurrences in window 23 [-579,-560] 33 -549.5 occurrences in window 24 [-559,-540] 34 -529.5 occurrences in window 25 [-539,-520] 35 -509.5 occurrences in window 26 [-519,-500] 36 -489.5 occurrences in window 27 [-499,-480] 37 -469.5 occurrences in window 28 [-479,-460] 38 -449.5 occurrences in window 29 [-459,-440] 39 -429.5 occurrences in window 30 [-439,-420] 40 -409.5 occurrences in window 31 [-419,-400] 41 -389.5 occurrences in window 32 [-399,-380] 42 -369.5 occurrences in window 33 [-379,-360] 43 -349.5 occurrences in window 34 [-359,-340] 44 -329.5 occurrences in window 35 [-339,-320] 45 -309.5 occurrences in window 36 [-319,-300] 46 -289.5 occurrences in window 37 [-299,-280] 47 -269.5 occurrences in window 38 [-279,-260] 48 -249.5 occurrences in window 39 [-259,-240] 49 -229.5 occurrences in window 40 [-239,-220] 50 -209.5 occurrences in window 41 [-219,-200] 51 -189.5 occurrences in window 42 [-199,-180] 52 -169.5 occurrences in window 43 [-179,-160] 53 -149.5 occurrences in window 44 [-159,-140] 54 -129.5 occurrences in window 45 [-139,-120] 55 -109.5 occurrences in window 46 [-119,-100] 56 -89.5 occurrences in window 47 [-99,-80] 57 -69.5 occurrences in window 48 [-79,-60] 58 -49.5 occurrences in window 49 [-59,-40] 59 -29.5 occurrences in window 50 [-39,-20] 60 -9.5 occurrences in window 51 [-19,0] 61 10.5 occurrences in window 52 [1,20] 62 30.5 occurrences in window 53 [21,40] 63 50.5 occurrences in window 54 [41,60] 64 70.5 occurrences in window 55 [61,80] 65 90.5 occurrences in window 56 [81,100] 66 110.5 occurrences in window 57 [101,120] 67 130.5 occurrences in window 58 [121,140] 68 150.5 occurrences in window 59 [141,160] 69 170.5 occurrences in window 60 [161,180] 70 190.5 occurrences in window 61 [181,200]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -1009.5 | -989.5 | -969.5 | -949.5 | -929.5 | -909.5 | -889.5 | -869.5 | -849.5 | -829.5 | -809.5 | -789.5 | -769.5 | -749.5 | -729.5 | -709.5 | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 168529 | 11029.3 | 60 | 0.0e+00 | 0 | 300 | 1 | 200 | 2008 | 2078 | 2121 | 2128 | 2111 | 2147 | 2054 | 2136 | 2058 | 2040 | 2010 | 2063 | 2076 | 2163 | 2132 | 2161 | 2117 | 2239 | 2277 | 2233 | 2315 | 2352 | 2297 | 2331 | 2327 | 2385 | 2428 | 2415 | 2466 | 2476 | 2408 | 2523 | 2466 | 2466 | 2552 | 2571 | 2687 | 2729 | 2707 | 2862 | 2975 | 3119 | 3263 | 3457 | 3501 | 3670 | 3917 | 4009 | 3812 | 3994 | 3973 | 4141 | 4180 | 4085 | 4208 | 4096 | 3982 | 4093 | 3995 | 3744 |
| g | g | 152050 | 4234.3 | 60 | 0.0e+00 | 0 | 300 | 2 | 201 | 2035 | 2124 | 2074 | 2141 | 1995 | 1992 | 2058 | 2004 | 2024 | 2029 | 2022 | 2059 | 2129 | 2171 | 2180 | 2178 | 2189 | 2144 | 2219 | 2211 | 2276 | 2252 | 2319 | 2299 | 2352 | 2429 | 2271 | 2321 | 2400 | 2334 | 2372 | 2282 | 2352 | 2445 | 2512 | 2554 | 2426 | 2528 | 2577 | 2496 | 2667 | 2754 | 2705 | 2828 | 2938 | 2816 | 2969 | 2921 | 2836 | 3093 | 3570 | 3158 | 3059 | 3230 | 3301 | 3421 | 3521 | 3479 | 3452 | 3356 |
| a | a | 166832 | 1666.4 | 60 | 0.0e+00 | 0 | 300 | 3 | 263 | 2470 | 2564 | 2623 | 2487 | 2480 | 2468 | 2654 | 2684 | 2621 | 2641 | 2602 | 2526 | 2675 | 2608 | 2625 | 2660 | 2706 | 2649 | 2671 | 2866 | 2795 | 2882 | 2751 | 2800 | 2857 | 2852 | 2884 | 2973 | 2817 | 2849 | 2924 | 2908 | 2987 | 3006 | 3065 | 3054 | 3057 | 3179 | 3141 | 3216 | 3260 | 3117 | 3148 | 3177 | 3184 | 3198 | 3056 | 3073 | 3207 | 3120 | 2840 | 2588 | 2431 | 2419 | 2280 | 2381 | 2237 | 2208 | 2252 | 2116 |
| t | t | 165091 | 906.4 | 60 | 0.0e+00 | 0 | 300 | 4 | 237 | 2550 | 2461 | 2548 | 2516 | 2555 | 2575 | 2591 | 2540 | 2564 | 2599 | 2634 | 2709 | 2577 | 2714 | 2675 | 2701 | 2614 | 2746 | 2769 | 2781 | 2841 | 2728 | 2785 | 2740 | 2839 | 2763 | 2823 | 2861 | 2852 | 2890 | 2875 | 2869 | 2923 | 2917 | 2783 | 2999 | 3063 | 2945 | 3017 | 3118 | 3083 | 3102 | 3130 | 3098 | 3101 | 3022 | 2914 | 2911 | 3049 | 2783 | 2427 | 2660 | 2609 | 2469 | 2523 | 2376 | 2437 | 2378 | 2422 | 2310 |
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