One-to-n alignments
Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/03/19/peak-motifs.2025-03-19.101854_2025-03-19.101854_hlFw6q/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/03/19/peak-motifs.2025-03-19.101854_2025-03-19.101854_hlFw6q/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
 |
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; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; wwCCGTTTcat
; Alignment reference
a 4 4 0 1 1 0 0 0 1 4 2
c 2 1 9 8 1 0 0 0 6 2 1
g 0 1 0 0 7 0 0 0 1 1 1
t 3 3 0 0 0 9 9 9 1 2 5
|
| oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1) |
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; oligos_7nt_mkv1_m1 versus oligos_7nt_mkv1_m1; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; wwCCGTTTcat
; cor=; Ncor=
a 4 4 0 1 1 0 0 0 1 4 2
c 2 1 9 8 1 0 0 0 6 2 1
g 0 1 0 0 7 0 0 0 1 1 1
t 3 3 0 0 0 9 9 9 1 2 5
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv1_m2_shift0 (oligos_6nt_mkv1_m2) |
 |
|
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; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; dwAAAAGAaw
; Alignment reference
a 6 8 19 19 19 19 0 19 10 11
c 1 2 0 0 0 0 0 0 2 1
g 6 2 0 0 0 0 19 0 4 2
t 6 7 0 0 0 0 0 0 3 5
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| oligos_6nt_mkv1_m2_shift0 (oligos_6nt_mkv1_m2) |
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; oligos_6nt_mkv1_m2 versus oligos_6nt_mkv1_m2; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; dwAAAAGAaw
; cor=; Ncor=
a 6 8 19 19 19 19 0 19 10 11
c 1 2 0 0 0 0 0 0 2 1
g 6 2 0 0 0 0 19 0 4 2
t 6 7 0 0 0 0 0 0 3 5
|
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
 |
|
|
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=0; ncol=10; ywCCCTTChw
; Alignment reference
a 0 4 0 2 0 0 1 0 3 4
c 3 2 9 8 10 1 0 10 3 1
g 2 0 0 0 0 0 0 0 0 1
t 5 4 1 0 0 9 9 0 4 4
|
| oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1) |
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; oligos_6nt_mkv1_m1 versus oligos_6nt_mkv1_m1; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; ywCCCTTChw
; cor=; Ncor=
a 0 4 0 2 0 0 1 0 3 4
c 3 2 9 8 10 1 0 10 3 1
g 2 0 0 0 0 0 0 0 0 1
t 5 4 1 0 0 9 9 0 4 4
|