RSAT - peak-motifs result

Analysis: test1 (20/03/2025 14:33)

peak-motifs  -v 1 -title test1 -i $RSAT/public_html/tmp/www-data/2025/03/20/peak-motifs.2025-03-20.143238_2025-03-20.143238_XEBOsR/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/20/peak-motifs.2025-03-20.143238_2025-03-20.143238_XEBOsR

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tccacggaa (sig=13.05; e-value=8.9e-14) RC: ttccgtgga oligos_6nt_mkv2_m2 assembly: ataataat (sig=7.13; e-value=7.4e-08) RC: attattat oligos_6nt_mkv2_m3 assembly: accacc (sig=3.22; e-value=0.0006) RC: ggtggt oligos_6nt_mkv2_m4 assembly: cccccc (sig=2.06; e-value=0.0087) RC: gggggg oligos_6nt_mkv2_m5 assembly: gtcatcaa (sig=1.78; e-value=0.017) RC: ttgatgac	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ttccacggaa (sig=18.02; e-value=9.5e-19) RC: ttccgtggaa oligos_7nt_mkv2_m2 assembly: tcatcaa (sig=2.92; e-value=0.0012) RC: ttgatga oligos_7nt_mkv2_m3 assembly: ccccccct (sig=2.87; e-value=0.0013) RC: aggggggg oligos_7nt_mkv2_m4 assembly: cattattag (sig=2.80; e-value=0.0016) RC: ctaataatg oligos_7nt_mkv2_m5 assembly: caccaccac (sig=1.75; e-value=0.018) RC: gtggtggtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=13.05; evalue=8.9e-14 vyyCCACGGArrc GYYTCCGTGGRRB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (15.62%) Max nb of predicted sites per peak: 8  (ChrE_C_glabrata_CBS138_bPeaks_1) Mean nb of predicted sites per peak: 2.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=7.13; evalue=7.4e-08 wwaTAATAAtaw WTATTATTATWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (9.38%) Max nb of predicted sites per peak: 12  (mito_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 2.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.22; evalue=0.0006 syACCACCrs SYGGTGGTRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 39 (20.31%) Max nb of predicted sites per peak: 6  (ChrF_C_glabrata_CBS138_bPeak_3) Mean nb of predicted sites per peak: 1.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=2.06; evalue=0.0087 ccCCCCCCcc GGGGGGGGGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (6.25%) Max nb of predicted sites per peak: 15  (ChrK_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=1.78; evalue=0.017 arGTCATCAAcr YGTTGATGACYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (9.90%) Max nb of predicted sites per peak: 2  (ChrK_C_glabrata_CBS138_bPeak_76) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=18.02; evalue=9.5e-19 vvttCCrCGGAacc GGTTCCGYGGAABB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (14.06%) Max nb of predicted sites per peak: 8  (ChrK_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 2.85	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=2.92; evalue=0.0012 ykTCaTCaAmv BKTTGATGAMR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 40 (20.83%) Max nb of predicted sites per peak: 3  (ChrK_C_glabrata_CBS138_bPeak_45) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=2.87; evalue=0.0013 ccCCCCCCCcsc GSGGGGGGGGGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (5.73%) Max nb of predicted sites per peak: 14  (ChrK_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 7.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.80; evalue=0.0016 wtyATTATTAGww WWCTAATAATRAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (7.29%) Max nb of predicted sites per peak: 10  (mito_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.93	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.75; evalue=0.018 acCACCACCACsr YSGTGGTGGTGGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 35 (18.23%) Max nb of predicted sites per peak: 11  (ChrE_C_glabrata_CBS138_bPeaks_1) Mean nb of predicted sites per peak: 2.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title test1 -i $RSAT/public_html/tmp/www-data/2025/03/20/peak-motifs.2025-03-20.143238_2025-03-20.143238_XEBOsR/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/20/peak-motifs.2025-03-20.143238_2025-03-20.143238_XEBOsR

Warning: Not a single pattern was found in file tmp/www-data/2025/03/20/peak-motifs.2025-03-20.143238_2025-03-20.143238_XEBOsR/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/03/20/peak-motifs.2025-03-20.143238_2025-03-20.143238_XEBOsR/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab