; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	30	31	48	13	1	66	2	7	66	66	66	5	35	13
c	7	9	8	4	0	4	1	66	0	4	0	0	2	10
g	13	9	6	3	69	1	69	1	1	0	2	3	7	9
t	24	25	12	54	4	3	2	0	7	4	6	66	30	42
//
; Sites	74
>site_0
TTCTGAGCACATAT
>site_1
CAATGAGCTAATAT
>site_2
TCATGAGCTAATAC
>site_3
TTATGAGCTAATAT
>site_4
AAATGAGCTAATAT
>site_5
AAATGAGCAAATTT
>site_6
TTAAGAGCAAATAT
>site_7
AATTGTGCAAATGG
>site_8
TGCCGAGCAAATTC
>site_9
TGGAGAGCAAATAA
>site_10
GTGTGAGCAAATAT
>site_11
TAATGAGCAATTAT
>site_12
ACTTGAGCAAATAT
>site_13
ACCTGAGCAAATTT
>site_14
GTATGAGCTAAGTG
>site_15
TACTGAGCAAATTT
>site_16
GTGTGAGAAAATAT
>site_17
TTCTGAGCATATAT
>site_18
ACATGCGCAAATTT
>site_19
GTGTGAGCAAAATT
>site_20
TTTTGAGCACATTT
>site_21
AAGTGAGCAAAAAT
>site_22
TATTGAGCAAATTT
>site_23
TGATGATCAAAATA
>site_24
AGAGGAGAAAATAG
>site_25
AAACGAGCAAATAT
>site_26
AAATGAGCAAATTT
>site_27
TAATTAGCAAATAT
>site_28
CGATGAGCAAATAT
>site_29
TTAGTAGCAAATTC
>site_30
AAATGAGCAAATTA
>site_31
GTAAGAACAAATAT
>site_32
CTCTGACCAAATCT
>site_33
GTATGTGCGAATTG
>site_34
AAATGAGCAATTTC
>site_35
CGATGAGCAAATTT
>site_36
ACTTGAGCAAAGTT
>site_37
ATATGAGCAAATTA
>site_38
GAATGAGCATATGA
>site_39
TAGTGAGCACATAT
>site_40
AATCGAGCAAATGG
>site_41
CAACGAGCAAATAT
>site_42
ATATGCGCATATAC
>site_43
ATATGCGCATATAT
>site_44
AACAGAGCAAATGA
>site_45
AAATGAGCAATTTT
>site_46
ATTTGAGCAAATTA
>site_47
GTAAGAGGAAATAC
>site_48
GTATGAGCTATTTT
>site_49
TCATGAGAAAATTT
>site_50
TAAAGAGCAAATAG
>site_51
AATTGAGCAAATAT
>site_52
TTATGAGCACAAAT
>site_53
ACAAGAGCAAATAT
>site_54
ATATGATCAAGTAA
>site_55
ACAAGAGCAAATGA
>site_56
TATTGAGCAAATTT
>site_57
GGAAGAGCAAATTA
>site_58
TGATGAGCAAATAT
>site_59
AAATGAGCTAATTT
>site_60
AAATGTGCAAAATC
>site_61
AAAAGAGAAAATAA
>site_62
TTATGAGAAAAGTA
>site_63
TATTAAGCAAATTG
>site_64
TTATGAACAATTTC
>site_65
AAAGGAGCAAGTAA
>site_66
CTATGAGAAAATGC
>site_67
GAAATAGCAAATAT
>site_68
TTATTAGCAAATGG
>site_69
GAAAGGGCAAATCT
>site_70
AATTGCGCAAATAC
>site_71
GAAAGAGAAAATAG
>site_72
ACCTGAGCAAATAT
>site_73
CGTTGAGCAATTTT
a	27	20	0	0	56	49	0	56	32	19	24
c	5	10	56	0	0	4	0	0	6	10	10
g	6	7	0	4	0	0	0	0	1	5	9
t	18	19	0	52	0	3	56	0	17	22	13
//
; Sites	56
>site_0
AGCTAATATAC
>site_1
AGCTAATATAA
>site_2
AGCTAATATAA
>site_3
GTCGAATAACT
>site_4
CCCTAATAAAA
>site_5
AACGAATAACA
>site_6
TACTAATACTA
>site_7
ATCTAATATCC
>site_8
AACTAATATTG
>site_9
TTCTAATATCG
>site_10
TACTATTAACT
>site_11
CCCTAATAACA
>site_12
AACTAATATGC
>site_13
TTCTAATATTT
>site_14
TTCTAATAAAA
>site_15
AACTAATAAAG
>site_16
TTCTAATAAAT
>site_17
ATCTAATAATC
>site_18
ATCTAATATGT
>site_19
TACTACTAAAG
>site_20
ACCTAATACTT
>site_21
ACCTAATAATT
>site_22
TACTAATAAAA
>site_23
TCCTAATAATA
>site_24
TTCTAATATTA
>site_25
TACTATTAATA
>site_26
ACCTAATAATG
>site_27
ATCTAATAATA
>site_28
TCCTAATAAAC
>site_29
TACTAATAATG
>site_30
AACTACTAATA
>site_31
CACTAATAGTG
>site_32
ATCTAATACAT
>site_33
TCCTAATAATG
>site_34
ATCTAATAATC
>site_35
AACTAATACAT
>site_36
AGCGAATAATA
>site_37
TACTATTAATA
>site_38
AGCTAATATAT
>site_39
TTCTACTAACG
>site_40
TTCTAATAAGA
>site_41
ATCTAATATTA
>site_42
GGCTAATATAA
>site_43
AACTAATATAT
>site_44
ACCTAATAAAC
>site_45
GTCTAATATAA
>site_46
AACTAATAATA
>site_47
GACGAATAAAC
>site_48
GTCTAATACCA
>site_49
TGCTAATAAGC
>site_50
CACTAATATCT
>site_51
AACTAATAAGA
>site_52
ATCTAATACTC
>site_53
CTCTAATATAA
>site_54
GACTAATAATA
>site_55
ACCTACTAACT
a	11	11	0	0	37	0	0	37	13	8
c	9	6	0	37	0	0	37	0	9	4
g	3	7	0	0	0	0	0	0	4	12
t	14	13	37	0	0	37	0	0	11	13
//
; Sites	37
>site_0
CATCATCAAT
>site_1
TATCATCATG
>site_2
ACTCATCAAG
>site_3
TGTCATCAGT
>site_4
CATCATCATA
>site_5
GATCATCAAC
>site_6
AGTCATCAAT
>site_7
ATTCATCATG
>site_8
CATCATCACT
>site_9
CCTCATCACA
>site_10
TCTCATCACT
>site_11
CTTCATCACA
>site_12
AATCATCAGG
>site_13
TATCATCAAT
>site_14
TTTCATCATT
>site_15
TATCATCAGG
>site_16
AGTCATCATG
>site_17
ACTCATCATG
>site_18
CCTCATCAAT
>site_19
TTTCATCAAT
>site_20
ATTCATCAAA
>site_21
TTTCATCAGT
>site_22
CTTCATCACT
>site_23
CTTCATCAAA
>site_24
ATTCATCATG
>site_25
TGTCATCATT
>site_26
GCTCATCATA
>site_27
ATTCATCATG
>site_28
TGTCATCAAA
>site_29
TTTCATCACA
>site_30
AGTCATCACC
>site_31
TTTCATCAAG
>site_32
TATCATCACT
>site_33
TATCATCAAC
>site_34
CATCATCAAG
>site_35
GGTCATCATC
>site_36
ATTCATCACG
a	44	33	89	1	94	91	0	88	79	33	38
c	7	17	8	0	2	1	0	0	3	25	15
g	24	25	1	101	1	3	102	3	9	25	20
t	28	28	5	1	6	8	1	12	12	20	30
//
; Sites	103
>site_0
GCAGAAGATAG
>site_1
AAAGATGAAAT
>site_2
AGAGAAGAGGA
>site_3
GAAGAGGAAAA
>site_4
TGAGGAGAAAC
>site_5
ACAGTAGAAGA
>site_6
GTAGAAGAACA
>site_7
AAAGAAGATTA
>site_8
AGAGATGAAAG
>site_9
TCCGAAGAAAC
>site_10
GGTGAAGAACG
>site_11
AAAGAAGAGGA
>site_12
GACGAAGAACT
>site_13
TTAGAAGTACC
>site_14
TGAGAAGATAT
>site_15
AAAGAAGATAA
>site_16
TAAGAAGAAAT
>site_17
AAAGAAGAGAG
>site_18
ACAGAAGTAGT
>site_19
TTAGAAGATCC
>site_20
ACAGTAGAAGC
>site_21
GTAGAAGATCA
>site_22
TTTGAAGAAAC
>site_23
GTCGAAGAAAA
>site_24
AGAGAAGTAAG
>site_25
AAAGAAGTAAA
>site_26
ATAGAAGGATC
>site_27
AAAGAGGAAGT
>site_28
TTAGAAGAAGA
>site_29
GAAGAAGAAAA
>site_30
CGATAAGAATT
>site_31
AAAGAAGACTG
>site_32
ACAGAAGATTT
>site_33
GCAGAAGTAGA
>site_34
AGAGAAGAGAT
>site_35
CCAGAAGAGAT
>site_36
TGAGAAGAATA
>site_37
AGAGAAGATAT
>site_38
TTAGAAGAAGG
>site_39
GAAGAAGGACA
>site_40
AGAGATGAAGA
>site_41
TTAGATGAACC
>site_42
TGAGAAGAAAA
>site_43
TGAGAAGAATA
>site_44
TAAGAGGAAAT
>site_45
GAAGAAGAATT
>site_46
GAAGAAGAAGA
>site_47
TAAGAAGAAGA
>site_48
TTAGAAGTATT
>site_49
CCAGAAGTATA
>site_50
GTAGCAGAAGT
>site_51
TCAGTAGAACA
>site_52
ATAGAAGAAGT
>site_53
CGAGAATAATG
>site_54
AAAGAAGAGCT
>site_55
TGAGAAGTAAA
>site_56
ATAGACGAAGA
>site_57
GACGAAGAAAA
>site_58
GAAGAAGATCA
>site_59
TCTGAAGAAGA
>site_60
TCAGAAGAGGT
>site_61
GTAGAAGACTT
>site_62
ACAGAAGATGG
>site_63
TTAGTAGAAAT
>site_64
TGAGAAGAATA
>site_65
AGAGAAGAACA
>site_66
AGAGAAGAACA
>site_67
GCAGAAGAACA
>site_68
AGAGAAGAACG
>site_69
CACGAAGAAAC
>site_70
ATAGAAGAACA
>site_71
TAAGAAGACCA
>site_72
AAAGATGAATA
>site_73
TAGGAAGAACT
>site_74
AAAGATGAACT
>site_75
TTTGAAGAAAC
>site_76
GGAGAAGAAGT
>site_77
ACAGAAGATTC
>site_78
GATGAAGAACA
>site_79
GTAGATGAAGA
>site_80
AGAGAAGAGTG
>site_81
ATAGCAGAAAC
>site_82
CGAAAAGAACG
>site_83
CTAGTAGAACG
>site_84
AGAGAAGTATG
>site_85
AAAGAAGAAGC
>site_86
TTAGATGAACC
>site_87
GGAGAAGAAGT
>site_88
TAAGAAGAGAT
>site_89
AAAGAAGAAAG
>site_90
ATAGAAGAAAA
>site_91
AAAGAAGTATC
>site_92
ATAGAAGAATG
>site_93
AAAGAAGATTG
>site_94
AGAGAAGGACT
>site_95
ATCGAAGAAAT
>site_96
ACAGAAGAAAG
>site_97
ACCGAAGAAAG
>site_98
AAAGAAGAAGG
>site_99
TTCGAAGAACT
>site_100
GTAGAAGTAGA
>site_101
GAAGTAGAAGT
>site_102
GTAGAAGTAAT
a	7	14	0	30	30	0	0	30	9	16
c	1	2	30	0	0	30	0	0	11	7
g	7	3	0	0	0	0	0	0	5	2
t	15	11	0	0	0	0	30	0	5	5
//
; Sites	30
>site_0
ATCAACTACA
>site_1
GTCAACTACG
>site_2
TACAACTACC
>site_3
GTCAACTACA
>site_4
GGCAACTAGC
>site_5
CACAACTAGT
>site_6
ATCAACTAGC
>site_7
GTCAACTAAA
>site_8
GGCAACTATA
>site_9
TACAACTAGC
>site_10
TACAACTACA
>site_11
TACAACTACA
>site_12
TACAACTACA
>site_13
TACAACTACA
>site_14
TACAACTATA
>site_15
TACAACTAAT
>site_16
TACAACTAAT
>site_17
TTCAACTAGA
>site_18
TACAACTACA
>site_19
GGCAACTACT
>site_20
GTCAACTACA
>site_21
TTCAACTAAA
>site_22
ACCAACTATC
>site_23
AACAACTAAG
>site_24
AACAACTATC
>site_25
TTCAACTAAA
>site_26
TTCAACTAAT
>site_27
ACCAACTAAC
>site_28
ATCAACTAAA
>site_29
TACAACTATA
; Host name	rsat
; Job started	2025-03-25.113730
; Job done	2025-03-25.113730
; Seconds	0.11
;	user	0.11
;	system	0
;	cuser	0
;	csystem	0
