RSAT - peak-motifs result

Analysis: peaks_4 (25/03/2025 11:37)

peak-motifs  -v 1 -title peaks_4 -i $RSAT/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: atgagcaaat (sig=4.78; e-value=1.7e-05) RC: atttgctcat oligos_6nt_mkv2_m2 assembly: ctaataa (sig=1.89; e-value=0.013) RC: ttattag oligos_6nt_mkv2_m3 assembly: tcatca (sig=1.41; e-value=0.039) RC: tgatga oligos_6nt_mkv2_m4 assembly: agaagaa (sig=1.16; e-value=0.069) RC: ttcttct oligos_6nt_mkv2_m5 assembly: caacta (sig=0.07; e-value=0.85) RC: tagttg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: tgagcaaat (sig=7.98; e-value=1e-08) RC: atttgctca oligos_7nt_mkv2_m2 assembly: acagaga (sig=0.87; e-value=0.13) RC: tctctgt oligos_7nt_mkv2_m3 assembly: atcatta (sig=0.49; e-value=0.32) RC: taatgat oligos_7nt_mkv2_m4 assembly: ctaataaa (sig=0.44; e-value=0.36) RC: tttattag oligos_7nt_mkv2_m5 assembly: agaagaa (sig=0.23; e-value=0.59) RC: ttcttct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=4.78; evalue=1.7e-05 awatGAGCAAAtwt AWATTTGCTCATWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (37.04%) Max nb of predicted sites per peak: 5  (ChrE_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=1.89; evalue=0.013 ahCTAATAahm KDTTATTAGDT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (23.46%) Max nb of predicted sites per peak: 3  (mito_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=1.41; evalue=0.039 ykTCATCAmk MKTGATGAMR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (24.69%) Max nb of predicted sites per peak: 4  (mito_C_glabrata_CBS138_bPeak_9) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.16; evalue=0.069 rrAGAAGAavr YBTTCTTCTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (23.46%) Max nb of predicted sites per peak: 5  (mito_C_glabrata_CBS138_bPeak_4) Mean nb of predicted sites per peak: 1.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.07; evalue=0.85 kwCAACTAcm KGTAGTTGWM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (22.22%) Max nb of predicted sites per peak: 6  (ChrI_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=7.98; evalue=1e-08 aatGAGCAAATwt AWATTTGCTCATT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (33.33%) Max nb of predicted sites per peak: 5  (ChrE_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.81	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=0.87; evalue=0.13 vvACAGAGAmv BKTCTCTGTBB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (14.81%) Max nb of predicted sites per peak: 4  (ChrI_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=0.49; evalue=0.32 ttATCATTAms SKTAATGATAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (18.52%) Max nb of predicted sites per peak: 2  (mito_C_glabrata_CBS138_bPeak_8) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=0.44; evalue=0.36 wvCtAATAAArm KYTTTATTAGBW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (14.81%) Max nb of predicted sites per peak: 2  (mito_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=0.23; evalue=0.59 rgAGAAGaavr YBTTCTTCTCY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (22.22%) Max nb of predicted sites per peak: 5  (mito_C_glabrata_CBS138_bPeak_4) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title peaks_4 -i $RSAT/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV

Warning: Not a single pattern was found in file tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/03/25/peak-motifs.2025-03-25.113723_2025-03-25.113723_a960cV/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab