RSAT - peak-motifs result

Analysis: ccd4a (26/03/2025 11:51)

peak-motifs  -v 1 -title ccd4a -i $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: actatc (sig=1.27; e-value=0.054) RC: gatagt oligos_6nt_mkv1_m2 assembly: ccacaag (sig=1.19; e-value=0.065) RC: cttgtgg oligos_6nt_mkv1_m3 assembly: ccacaaat (sig=1.19; e-value=0.065) RC: atttgtgg oligos_6nt_mkv1_m4 assembly: tgtgaa (sig=0.00; e-value=1) RC: ttcaca oligos_6nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: tgactatcaa (sig=1.66; e-value=0.022) RC: ttgatagtca oligos_7nt_mkv1_m2 assembly: atttgtgg (sig=0.61; e-value=0.25) RC: ccacaaat oligos_7nt_mkv1_m3 assembly: tgtgaaa (sig=0.44; e-value=0.36) RC: tttcaca oligos_7nt_mkv1_m4 assembly: gtggcta (sig=0.10; e-value=0.79) RC: tagccac oligos_7nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_7nt_mkv1_m1	k-mer sig=1.66; evalue=0.022 wrTGACTATCrasy RSTYGATAGTCAYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 5  (ccdA) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_7nt_mkv1_m2	k-mer sig=0.61; evalue=0.25 kcaTTTGTGGSw WSCCACAAATGM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 5  (ccdA) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_7nt_mkv1_m3	k-mer sig=0.44; evalue=0.36 ywTGTGAAAGy RCTTTCACAWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 4  (ccdA) Mean nb of predicted sites per peak: 4.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_7nt_mkv1_m4	k-mer sig=0.10; evalue=0.79 bkGTGSCTAkS SMTAGSCACMV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (100.00%) Max nb of predicted sites per peak: 5  (ccdA) Mean nb of predicted sites per peak: 5.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ccd4a -i $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Not a single pattern was found in file tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115107_2025-03-26.115107_7eptOS/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab