; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115256_2025-03-26.115256_aAKMqf/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115256_2025-03-26.115256_aAKMqf/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115256_2025-03-26.115256_aAKMqf/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.115256_2025-03-26.115256_aAKMqf/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	2	0	1	5	0	0	5	0	0	3	4	1	1
c	0	0	0	0	0	5	0	0	0	5	0	0	1	1
g	0	2	0	3	0	0	0	0	0	0	1	0	2	0
t	3	1	5	1	0	0	5	0	5	0	1	1	1	3
//
; Sites	5
>site_0
AGTGACTATCTTAT
>site_1
TGTAACTATCGAGA
>site_2
AATTACTATCAAGC
>site_3
TATGACTATCAATT
>site_4
TTTGACTATCAACT
a	1	2	5	0	0	0	0	0	0	2	1	3
c	0	1	0	0	0	0	0	0	0	0	1	0
g	2	1	1	0	0	0	5	0	6	4	3	0
t	3	2	0	6	6	6	1	6	0	0	1	3
//
; Sites	6
>site_0
TAATTTTTGGGT
>site_1
GTGTTTGTGGTT
>site_2
AGATTTGTGGGA
>site_3
GCATTTGTGGCT
>site_4
TTATTTGTGAAA
>site_5
TAATTTGTGAGA
a	1	2	0	0	0	0	4	4	4	1	1
c	1	0	0	0	0	0	0	0	0	0	1
g	0	0	0	4	0	4	0	0	0	2	0
t	2	2	4	0	4	0	0	0	0	1	2
//
; Sites	4
>site_0
TATGTGAAATC
>site_1
CTTGTGAAAAT
>site_2
AATGTGAAAGA
>site_3
TTTGTGAAAGT
a	1	1	0	0	0	1	0	0	5	1	1
c	1	0	0	0	0	1	5	0	0	0	2
g	1	2	5	0	4	3	0	0	0	1	1
t	2	2	0	5	1	0	0	5	0	3	1
//
; Sites	5
>site_0
GAGTGACTATC
>site_1
TTGTGCCTAGG
>site_2
TTGTGGCTATT
>site_3
AGGTTGCTATC
>site_4
CGGTGGCTAAA
; Host name	rsat
; Job started	2025-03-26.115306
; Job done	2025-03-26.115306
; Seconds	0.09
;	user	0.09
;	system	0.02
;	cuser	0
;	csystem	0
