/var/www/html/rsat/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title fsdf -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	109
	Sum of sequence lengths      	29007
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	266
	Possible positions           	28898
 Oligonucleotide statistics:
	Total occurrences    	28344
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	28898
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	2	40
	2	-24	[-479,-460]	-469.5	2	40
	3	-23	[-459,-440]	-449.5	2	40
	4	-22	[-439,-420]	-429.5	2	40
	5	-21	[-419,-400]	-409.5	2	40
	6	-20	[-399,-380]	-389.5	2	40
	7	-19	[-379,-360]	-369.5	3	56
	8	-18	[-359,-340]	-349.5	4	71
	9	-17	[-339,-320]	-329.5	4	80
	10	-16	[-319,-300]	-309.5	4	80
	11	-15	[-299,-280]	-289.5	4	80
	12	-14	[-279,-260]	-269.5	8	144
	13	-13	[-259,-240]	-249.5	11	193
	14	-12	[-239,-220]	-229.5	12	226
	15	-11	[-219,-200]	-209.5	15	243
	16	-10	[-199,-180]	-189.5	15	300
	17	-9	[-179,-160]	-169.5	23	428
	18	-8	[-159,-140]	-149.5	31	548
	19	-7	[-139,-120]	-129.5	52	746
	20	-6	[-119,-100]	-109.5	74	1062
	21	-5	[-99,-80]	-89.5	74	1480
	22	-4	[-79,-60]	-69.5	109	2040
	23	-3	[-59,-40]	-49.5	109	2180
	24	-2	[-39,-20]	-29.5	109	2180
	25	-1	[-19,0]	-9.5	109	2180
	26	0	[1,20]	10.5	109	2180
	27	1	[21,40]	30.5	109	2180
	28	2	[41,60]	50.5	109	2180
	29	3	[61,80]	70.5	109	1970
	30	4	[81,100]	90.5	74	1458
	31	5	[101,120]	110.5	52	1040
	32	6	[121,140]	130.5	52	704
	33	7	[141,160]	150.5	31	532
	34	8	[161,180]	170.5	23	412
	35	9	[181,200]	190.5	15	297
	36	10	[201,220]	210.5	12	240
	37	11	[221,240]	230.5	12	224
	38	12	[241,260]	250.5	11	187
	39	13	[261,280]	270.5	8	136
	40	14	[281,300]	290.5	4	80
	41	15	[301,320]	310.5	4	80
	42	16	[321,340]	330.5	4	80
	43	17	[341,360]	350.5	4	69
	44	18	[361,380]	370.5	3	54
	45	19	[381,400]	390.5	2	40
	46	20	[401,420]	410.5	2	40
	47	21	[421,440]	430.5	2	40
	48	22	[441,460]	450.5	2	40
	49	23	[461,480]	470.5	2	40
	50	24	[481,500]	490.5	2	38

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 3049 63.4 49 8.2e-02 1.3 -0.12 1 4 5 6 5 3 2 6 8 5 9 11 13 31 21 36 43 64 46 83 111 153 217 235 255 213 231 215 243 226 131 78 68 41 40 34 25 25 18 12 6 10 7 15 8 11 0 0 6 10 4
tt tt 3050 54.7 49 2.7e-01 4.3 -0.63 2 3 5 1 10 3 2 2 7 7 3 4 21 25 22 34 30 45 69 79 120 136 192 247 239 222 245 232 243 177 177 98 69 45 51 21 22 21 25 15 12 16 10 7 8 5 7 8 2 1 5
gg gg 943 42.2 49 7.4e-01 12 -1.07 3 0 0 0 0 1 1 1 5 2 5 2 5 2 6 2 10 16 15 18 39 50 65 78 78 69 53 79 71 65 53 42 19 36 11 7 8 7 5 4 0 0 1 0 1 2 2 2 3 1 1
cc cc 1009 31.3 49 9.8e-01 16 -1.19 4 3 2 2 1 1 2 3 3 4 6 3 6 12 13 11 9 17 17 31 30 46 69 53 81 87 67 89 69 56 50 46 27 19 13 10 8 5 7 6 3 3 5 2 1 3 0 0 7 1 0
gt gt 1498 30.4 49 9.8e-01 16 -1.20 5 3 0 0 0 3 2 3 5 1 5 6 3 9 12 7 13 16 23 37 54 91 106 107 124 127 115 114 114 121 87 53 34 29 17 11 10 7 2 7 2 3 1 3 2 1 1 3 1 3 0
gc gc 1026 28.6 49 9.9e-01 16 -1.20 6 2 2 3 1 4 2 3 3 1 0 3 3 3 8 7 12 21 13 24 37 44 79 62 72 78 81 81 77 83 45 37 31 26 17 16 8 12 3 4 3 0 3 1 2 1 3 0 3 2 0
ca ca 1976 27.7 49 9.9e-01 16 -1.20 7 7 0 6 4 4 5 7 1 9 5 7 8 17 23 21 19 29 33 43 68 113 146 148 144 147 155 143 147 140 89 56 61 34 28 25 15 10 14 6 5 3 7 6 4 2 2 1 4 2 3
cg cg 589 27.1 49 1.0e+00 16 -1.20 8 0 0 1 1 2 1 0 1 1 0 2 2 0 8 2 7 5 8 10 16 24 45 35 43 62 41 54 35 50 32 28 10 12 9 7 6 8 4 7 0 1 0 0 3 2 2 2 0 0 0
tg tg 1813 24.5 49 1.0e+00 16 -1.20 9 2 3 1 2 3 4 3 7 2 3 4 8 6 5 19 20 28 32 47 66 98 115 141 137 151 131 146 138 135 98 71 39 38 23 16 14 14 7 8 3 6 4 3 1 0 3 3 2 2 1
at at 2787 24.2 49 1.0e+00 16 -1.20 10 3 3 8 3 3 5 4 6 12 6 4 16 14 16 29 33 38 64 78 107 157 193 211 198 205 217 209 198 188 137 105 60 51 39 24 20 21 21 13 9 9 13 6 7 1 3 2 4 4 10
tc tc 1617 24.1 49 1.0e+00 16 -1.20 11 4 2 2 2 3 3 4 4 8 7 5 12 13 18 8 13 18 24 44 57 83 116 118 120 130 139 107 113 103 95 50 42 27 22 19 14 8 14 7 4 6 4 6 4 3 5 3 1 0 3
ta ta 2480 22.5 49 1.0e+00 16 -1.20 12 2 4 4 3 2 3 4 6 8 7 5 14 16 17 18 25 35 59 70 97 143 186 192 168 178 196 182 180 164 121 98 61 43 36 17 17 17 10 10 10 8 10 7 4 1 2 4 3 6 7
ga ga 1599 21.3 49 1.0e+00 16 -1.20 13 0 4 1 1 1 2 2 5 5 5 6 8 6 10 13 22 19 37 41 59 67 110 131 127 114 112 140 122 107 85 69 31 29 18 17 14 15 13 8 3 5 2 2 2 2 1 2 1 1 2
ag ag 1735 17.9 49 1.0e+00 16 -1.20 14 2 3 2 1 1 2 5 4 5 7 8 5 14 14 9 19 24 34 43 71 90 122 138 136 107 130 138 144 123 89 64 48 31 21 19 15 12 5 6 5 2 2 3 2 2 0 1 3 3 1
ct ct 1619 17.0 49 1.0e+00 16 -1.20 15 2 5 1 2 3 2 4 6 5 7 4 12 12 14 11 11 28 32 44 59 73 122 116 113 131 131 107 127 93 84 66 42 29 24 17 14 11 9 5 9 5 5 5 2 2 6 5 0 2 0
ac ac 1554 16.7 49 1.0e+00 16 -1.20 16 3 2 2 4 3 2 5 0 5 5 6 8 13 19 16 14 25 34 34 50 78 119 128 105 124 116 116 113 105 65 59 42 23 23 17 10 11 10 7 6 3 6 3 3 2 3 4 0 2 1 
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