/var/www/html/rsat/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	113
		file1	2	10	60
		file1	3	11	63
		file1	4	10	41
		file1	5	10	79
		file1	6	15	86
		file1	7	11	72
		file1	8	14	66
		file1	9	14	82
		file1	10	15	80
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.185353_2025-03-26.185353_2AVZQp/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		113
		file2		2		10		60
		file2		3		11		63
		file2		4		10		41
		file2		5		10		79
		file2		6		15		86
		file2		7		11		72
		file2		8		14		66
		file2		9		14		82
		file2		10		15		80
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.982 0.982 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.982 0.982 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.981 0.981 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.981 0.981 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.992 0.926 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.992 0.926 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m5 0.989 0.923 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m4 0.989 0.923 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 0.979 0.914 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 0.979 0.914 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 0.978 0.913 14 15 14 15 0.9333 1.0000 0.9333 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 0.978 0.913 15 14 14 15 0.9333 0.9333 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 0.927 0.865 15 14 14 15 0.9333 0.9333 1.0000 R 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 0.927 0.865 14 15 14 15 0.9333 1.0000 0.9333 R -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 0.927 0.842 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 0.927 0.842 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 0.894 0.835 14 15 14 15 0.9333 1.0000 0.9333 R -1
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 0.894 0.835 15 14 14 15 0.9333 0.9333 1.0000 R 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.938 0.813 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.938 0.813 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 0.894 0.775 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 0.894 0.775 14 14 13 15 0.8667 0.9286 0.9286 R -1
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m3 0.769 0.699 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m5 0.769 0.699 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 0.736 0.453 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m3 0.736 0.453 10 11 8 13 0.6154 0.8000 0.7273 D -3 
 Host name	rsat
 Job started	2025-03-26.185413
 Job done	2025-03-26.185419
 Seconds	0.3
	user	0.3
	system	0.25
	cuser	5.34
;	csystem	0.83