RSAT - peak-motifs result

Analysis: bv (26/03/2025 19:10)

peak-motifs  -v 1 -title bv -i $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: acagcaaaaa (sig=10.05; e-value=8.9e-11) RC: tttttgctgt oligos_6nt_mkv2_m2 assembly: tgataa (sig=3.54; e-value=0.00029) RC: ttatca oligos_6nt_mkv2_m3 assembly: taatgat (sig=3.06; e-value=0.00087) RC: atcatta oligos_6nt_mkv2_m4 assembly: cttctc (sig=1.61; e-value=0.025) RC: gagaag oligos_6nt_mkv2_m5 assembly: aataat (sig=0.21; e-value=0.62) RC: attatt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: aacagcaaaaa (sig=7.34; e-value=4.6e-08) RC: tttttgctgtt oligos_7nt_mkv2_m2 assembly: ctgataa (sig=1.87; e-value=0.013) RC: ttatcag oligos_7nt_mkv2_m3 assembly: tattgctgtt (sig=2.28; e-value=0.0052) RC: aacagcaata oligos_7nt_mkv2_m4 assembly: gcagcaaaaa (sig=7.34; e-value=4.6e-08) RC: tttttgctgc oligos_7nt_mkv2_m5 assembly: atcagcaaaaa (sig=7.34; e-value=4.6e-08) RC: tttttgctgat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]
oligos_8nt_mkv2	oligos_8nt_mkv2_m1 assembly: gaacagcaaaaat (sig=16.46; e-value=3.5e-17) RC: atttttgctgttc oligos_8nt_mkv2_m2 assembly: cagcaataat (sig=4.54; e-value=2.9e-05) RC: attattgctg oligos_8nt_mkv2_m3 assembly: cccccccc (sig=1.99; e-value=0.01) RC: gggggggg oligos_8nt_mkv2_m4 assembly: atcagcaaaaat (sig=16.46; e-value=3.5e-17) RC: atttttgctgat oligos_8nt_mkv2_m5 assembly: cattttgc (sig=0.88; e-value=0.13) RC: gcaaaatg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_8nt	Not a single significant pattern	[positions_8nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=10.05; evalue=8.9e-11 waaCAGCAAaaatm KATTTTTGCTGTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (37.61%) Max nb of predicted sites per peak: 3  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=3.54; evalue=0.00029 rmTGATAAdr YHTTATCAKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (24.77%) Max nb of predicted sites per peak: 4  (mito_C_glabrata_CBS138_bPeak_5) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=3.06; evalue=0.00087 wwhAATGATrt AYATCATTDWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (17.43%) Max nb of predicted sites per peak: 2  (mito_C_glabrata_CBS138_bPeak_8) Mean nb of predicted sites per peak: 1.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.61; evalue=0.025 ksCTTCTCcg CGGAGAAGSM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (22.94%) Max nb of predicted sites per peak: 3  (ChrK_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 1.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.21; evalue=0.62 shAATAATrv BYATTATTDS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (17.43%) Max nb of predicted sites per peak: 5  (mito_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=7.34; evalue=4.6e-08 rwaaCAGCaAaAatm KATTTTTGCTGTTWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (44.95%) Max nb of predicted sites per peak: 3  (ChrI_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=1.87; evalue=0.013 yrCTGaTAabd HVTTATCAGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (18.35%) Max nb of predicted sites per peak: 2  (mito_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=2.28; evalue=0.0052 vytaTTGCTGttww WWAACAGCAATARB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 36 (33.03%) Max nb of predicted sites per peak: 3  (ChrL_C_glabrata_CBS138_bPeak_16) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=7.34; evalue=4.6e-08 tdkCAGCaAaAatr YATTTTTGCTGMHA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (44.95%) Max nb of predicted sites per peak: 3  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=7.34; evalue=4.6e-08 kwatCAGCaAaAatm KATTTTTGCTGATWM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 47 (43.12%) Max nb of predicted sites per peak: 3  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_8nt_mkv2_m1	k-mer sig=16.46; evalue=3.5e-17 mrdawCAGCaAaAatav BTATTTTTGCTGWTHYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (44.04%) Max nb of predicted sites per peak: 3  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_8nt_mkv2_m2	k-mer sig=4.54; evalue=2.9e-05 wdCAGCAAwAatar YTATTWTTGCTGHW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (44.04%) Max nb of predicted sites per peak: 4  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_8nt_mkv2_m3	k-mer sig=1.99; evalue=0.01 ycCCCCCCCCsy RSGGGGGGGGGR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (10.09%) Max nb of predicted sites per peak: 16  (ChrF_C_glabrata_CBS138_bPeak_2) Mean nb of predicted sites per peak: 4.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_8nt_mkv2_m4	k-mer sig=16.46; evalue=3.5e-17 dwatCAGCaAaAatmr YKATTTTTGCTGATWH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (44.04%) Max nb of predicted sites per peak: 3  (ChrD_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_8nt_mkv2_m5	k-mer sig=0.88; evalue=0.13 bsCaTTTTGCyr YRGCAAAATGSV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (18.35%) Max nb of predicted sites per peak: 5  (ChrI_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title bv -i $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3

Warning: Not a single pattern was found in file tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/03/26/peak-motifs.2025-03-26.190945_2025-03-26.190945_D8YfU3/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab