; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	20	17	6	3	12	0	0	66	0	0	8	66	0	0	44	22	10
c	21	12	10	0	53	0	2	0	24	0	57	0	1	64	13	12	19
g	14	14	12	58	1	0	48	0	42	0	1	0	50	0	4	14	15
t	11	23	38	5	0	66	16	0	0	66	0	0	15	2	5	18	22
//
; Sites	66
>site_0
CGCGCTGAGTCAGCATC
>site_1
GATGCTGACTCAGCGCG
>site_2
CGCGCTGAGTCATCCGC
>site_3
CGCGGTGAGTCAGCCAG
>site_4
TTTGCTTAGTCATCATT
>site_5
AATGATGACTAAGCAAA
>site_6
AATGATGAGTCAGCAGT
>site_7
ACTGCTGACTCATCATT
>site_8
CCGGCTGAGTCATCCAG
>site_9
CAAAATGAGTCAGCCGT
>site_10
AGGGCTGAGTCAGCAGT
>site_11
ACTGCTGACTCAGCCCT
>site_12
GCGGCTGAGTCAGCAGG
>site_13
CCTGCTGACTCAGCCGC
>site_14
CTCGCTTAGTCATCATT
>site_15
GCAGCTGAGTCAGCATC
>site_16
GATGCTGACTCAGCTGC
>site_17
TGTGATGAGTCAGCAGC
>site_18
GCTGCTGACTCATCACA
>site_19
CTCGCTTAGTCATCATT
>site_20
CTCGCTTAGTCATCATT
>site_21
GTGGCTGACTCAGCCAG
>site_22
CTGGCTGAGTCAGCCAC
>site_23
GGCGATGAGTCAGCGAC
>site_24
GTTGCTGAGTCAGCAAG
>site_25
CTTGCTGACTCAGCAAC
>site_26
AATGATGAGTAAGCCAG
>site_27
GGAGCTGAGTCAGCAGT
>site_28
ACTGCTGACTCAGCTCC
>site_29
TATGCTTAGTAATCAAT
>site_30
CAGTCTTAGTCAGCATC
>site_31
CTTGCTGAGTCATCACT
>site_32
AGTGATGACTCAGCAAG
>site_33
CGTACTTAGTCAGCATT
>site_34
AATGCTGACTAAGTACG
>site_35
ATATCTTAGTCAGCATT
>site_36
ACTGCTCAGTAAGCAGG
>site_37
TATGCTTACTCAGCGGA
>site_38
TCCGCTGAGTAAGCATA
>site_39
AATTATTAGTCAGCATG
>site_40
GATGCTGAGTCAGCTAA
>site_41
TTAGCTGACTCAGCATC
>site_42
GCCACTGACTCAGCAAT
>site_43
ATTGCTGAGTCAGTGGC
>site_44
ATTGCTTACTCAGCAAT
>site_45
ATTGCTGAGTAAGCAAT
>site_46
TTTGCTTAGTCACCTGA
>site_47
TTTGCTTAGTCATCACA
>site_48
TGTGATGACTAAGCAAA
>site_49
GTGGCTGACTCAGCCAC
>site_50
GTGGCTGAGTCAGCCAC
>site_51
AGTGCTGACTCAGCAGG
>site_52
CCTGCTGAGTCAGCACT
>site_53
GTTGCTGAGTCATCAAA
>site_54
TTTGATGACTCAGCAAC
>site_55
CAGTCTTAGTCAGCATC
>site_56
CATGCTGAGTGATCAAT
>site_57
ATTGATCACTCAGCATG
>site_58
TGTGCTGACTCAGCCTG
>site_59
CAGGCTGAGTCAGCACA
>site_60
AGTGATGAGTCAGCTAT
>site_61
ATAGCTGACTCATCACT
>site_62
AAGGCTGAGTCAGCACG
>site_63
CGTGCTGACTCAGCCTT
>site_64
CTCGCTTAGTCATCACC
>site_65
CAGTCTTAGTCAGCATC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	12	9	0	44	0	0	0	1	7	10	13
c	11	12	44	0	0	2	1	0	13	11	7
g	12	9	0	1	45	43	43	44	8	12	21
t	10	15	1	0	0	0	1	0	17	12	4
//
; Sites	45
>site_0
ATCAGGGGCGT
>site_1
TTTAGGGGTCG
>site_2
TGCAGGGGTGA
>site_3
TCCAGGGGTTG
>site_4
TCCAGGGGTTG
>site_5
CTCAGGGGGGG
>site_6
GCCAGGGGTCA
>site_7
TGCAGGGGCGG
>site_8
GTCAGGGGTGG
>site_9
AGCAGGGGCTG
>site_10
CCCAGGGGCAG
>site_11
AGCAGGGGTTG
>site_12
GCCAGGGGGTA
>site_13
AGCAGCGGTAA
>site_14
CTCAGGGGGCC
>site_15
CTCAGGGGCTA
>site_16
ATCAGGGGTCC
>site_17
GACAGGGGAGG
>site_18
ACCAGGGGAAG
>site_19
GTCAGGGGCAA
>site_20
CTCAGGGGTAA
>site_21
AACAGGGGGAA
>site_22
TTCAGGGGCCA
>site_23
CACAGGGGCTA
>site_24
GGCAGGGGATG
>site_25
ACCAGGGGCCA
>site_26
CGCAGGCGTAG
>site_27
GACAGGGATAC
>site_28
TACAGGGGAGG
>site_29
GACGGGGGTGG
>site_30
GACAGGGGGAG
>site_31
GCCAGGGGTTC
>site_32
TTCAGGGGTTT
>site_33
CTCAGGGGCCT
>site_34
CTCAGGGGACC
>site_35
TTCAGGGGGCG
>site_36
GACAGGGGAGG
>site_37
CTCAGGGGCTG
>site_38
ACCAGGTGTAC
>site_39
AGCAGGGGGGA
>site_40
CCCAGGGGCTT
>site_41
TGCAGGGGGCC
>site_42
ACCAGGGGCGA
>site_43
ACCAGCGGTCG
>site_44
GACAGGGGAGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	12	10	26	32	43	45	0	0	38	3	9	10
c	11	5	2	4	1	0	0	0	1	1	9	14
g	14	22	12	1	1	0	43	45	6	41	22	13
t	8	8	5	8	0	0	2	0	0	0	5	8
//
; Sites	45
>site_0
GTAAAAGGGGCT
>site_1
TCAAAATGAGTC
>site_2
AAGAAAGGAGTC
>site_3
TAGCAAGGAGGA
>site_4
AAATAAGGAGGC
>site_5
AAATAAGGAGGC
>site_6
CTGAAAGGAGCC
>site_7
GTATAAGGAGAC
>site_8
GGAAAAGGAGAG
>site_9
AGTCAAGGAGTG
>site_10
AGAAAAGGCGGG
>site_11
GGCGAAGGAGGG
>site_12
AAAAAAGGACTA
>site_13
GAAAAAGGAACT
>site_14
CTTAAAGGAGCA
>site_15
TGGAAAGGAGGG
>site_16
GGGAAAGGAGGG
>site_17
GGGTAAGGAGGG
>site_18
GGTTAAGGAGGG
>site_19
GGTAAAGGAGGG
>site_20
TGGAAAGGAGGG
>site_21
CAAAAATGAGGC
>site_22
ACAAAAGGAAGT
>site_23
GGAAAAGGGGCT
>site_24
GCAAAAGGAGAA
>site_25
CTGAAAGGAGCC
>site_26
CGAAAAGGGGCC
>site_27
CGAAAAGGAGAA
>site_28
AGAAAAGGGGGA
>site_29
AGAAAAGGAGGC
>site_30
TGAAAAGGAGGA
>site_31
GGAAAAGGAGGA
>site_32
GAATAAGGAGGC
>site_33
AAAAGAGGAGAC
>site_34
GGAACAGGAGGT
>site_35
CCACAAGGAGAT
>site_36
TTCTAAGGAGAG
>site_37
AGAAAAGGGGCT
>site_38
CTGTAAGGAGTA
>site_39
TAAAAAGGGGGA
>site_40
CGTCAAGGAGGC
>site_41
AGGAAAGGAGAG
>site_42
CCAAAAGGAAAT
>site_43
TGGAAAGGAGGG
>site_44
CTGAAAGGAGCC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	27	23	10	1	15	0	0	71	0	1	35	66	7	9	27
c	18	17	4	2	54	0	1	0	60	0	28	2	2	48	13
g	15	7	5	67	2	0	57	0	11	0	6	2	45	2	21
t	11	24	52	1	0	71	13	0	0	70	2	1	17	12	10
//
; Sites	71
>site_0
GATGCTGACTCAGCG
>site_1
CGTCCTGACTTGGGT
>site_2
CTGGCTGACTCACCG
>site_3
AATGATGACTAAGCA
>site_4
ACTGCTGACTCATCA
>site_5
CATTCTGACTGCGAC
>site_6
ACGGCTGACTCATTT
>site_7
ACTGCTGACTCAGCC
>site_8
GTTGCTTACTAATCT
>site_9
CCTGCTGACTCAGCC
>site_10
AATGATGACTAAGCG
>site_11
CTAGCTTACTAAATG
>site_12
CTAGCTTACTAAATG
>site_13
AATGATGACTAATCG
>site_14
TCAGATGACTAATCA
>site_15
GATGCTGACTCAGCT
>site_16
GCTGCTGACTCATCA
>site_17
AATGATGACTAAGCG
>site_18
AATGATGACTAAGCG
>site_19
CTAGCTTACTAAATG
>site_20
GTGGCTGACTCAGCC
>site_21
GTCGCTGACTCATCG
>site_22
GTTGCTGAGTCAGCA
>site_23
CTTGCTGACTCAGCA
>site_24
CTAGCTTACTAAATG
>site_25
AATGATGACTAATCG
>site_26
AATGATGACTAATCG
>site_27
CTAGCTTACTAAATG
>site_28
AATGATGAGTAAGCC
>site_29
ACTGCTGACTCAGCT
>site_30
CTAGCTTACTAAATA
>site_31
AATAATGACTAAGCG
>site_32
ATTGATTACTAAGCA
>site_33
GATGCTGACTAAGAC
>site_34
CTTGCTGAGTCATCA
>site_35
AGTGATGACTCAGCA
>site_36
AATGCTGACTAAGTA
>site_37
AATGCTGACTAAGAT
>site_38
CCTGCTTACTGAGCA
>site_39
ACTGCTCAGTAAGCA
>site_40
TATGCTTACTCAGCG
>site_41
TCCGCTGAGTAAGCA
>site_42
TCCGCTGACTGATCC
>site_43
CATGCTGACTAATAA
>site_44
GATGCTGAGTCAGCT
>site_45
TTAGCTGACTCAGCA
>site_46
ATTGCTGAGTCAGTG
>site_47
ATTGCTTACTCAGCA
>site_48
ATTGCTGAGTAAGCA
>site_49
TCAGGTGACTAAGCA
>site_50
TGTGATGACTAAGCA
>site_51
GTGGCTGACTCAGCC
>site_52
AGTGCTGACTCAGCA
>site_53
CCTGCTGAGTCAGCA
>site_54
GCTGGTGACTACCAA
>site_55
GTTGCTGAGTCATCA
>site_56
TTTGATGACTCAGCA
>site_57
GATGCTGACTAAGAC
>site_58
TCTGCTGACTGATAC
>site_59
AACGCTGACAAATCT
>site_60
CCTGCTGACTGTGTT
>site_61
CATGCTGAGTGATCA
>site_62
ATGCCTGACTAAGTG
>site_63
TGTGCTGACTCAGCC
>site_64
TTTGCTTACTTAGAT
>site_65
AATGCTGACTAAAGG
>site_66
ATAGCTGACTCATCA
>site_67
CGTGCTGACTCAGCC
>site_68
ACTGCTTACTAGGTG
>site_69
GGTGATGACTAAGCG
>site_70
GATGCTGACTAAGAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
a	4	11	1	0	0	0	26	0	3	10
c	6	6	0	25	0	0	0	26	2	5
g	2	2	25	1	0	0	0	0	4	6
t	14	7	0	0	26	26	0	0	17	5
//
; Sites	26
>site_0
TTGCTTACTA
>site_1
CGACTTACGT
>site_2
TCGCTTACAG
>site_3
TAGCTTACTA
>site_4
TAGCTTACTA
>site_5
TAGCTTACTG
>site_6
TAGCTTACTA
>site_7
TAGCTTACTA
>site_8
TAGCTTACTA
>site_9
CAGCTTACAT
>site_10
TGGCTTACTC
>site_11
GCGCTTACAT
>site_12
ACGCTTACCG
>site_13
TAGCTTACTA
>site_14
CTGCTTACTG
>site_15
AAGCTTACTG
>site_16
AAGCTTACGA
>site_17
GCGGTTACGT
>site_18
ATGCTTACTC
>site_19
TCGCTTACTC
>site_20
TTGCTTACTC
>site_21
CAGCTTACTC
>site_22
TCGCTTACCG
>site_23
CTGCTTACGA
>site_24
TTGCTTACTT
>site_25
CTGCTTACTA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/oligos_6nt_mkv2//peak-motifs_oligos-2str-noov_6nt_mkv2_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-04-03.111019
; Job done	2025-04-03.111021
; Seconds	0.17
;	user	0.17
;	system	0.06
;	cuser	1.23
;	csystem	0.24
