position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title N9_vg20 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 150 Sum of sequence lengths 15000 Min sequence length 0 Max sequence length 100 Average sequence length 100 Possible positions 15000 Oligonucleotide statistics: Total occurrences 12497 Position interval parameters: Position interval 20 Number of windows 6 Total positions 15000 Degrees of freedom 5 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -3 [-59,-40] -49.5 150 1500 2 -2 [-39,-20] -29.5 150 3000 3 -1 [-19,0] -9.5 150 3000 4 0 [1,20] 10.5 150 3000 5 1 [21,40] 30.5 150 3000 6 2 [41,60] 50.5 150 1500 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -49.5 occurrences in window 1 [-59,-40] 11 -29.5 occurrences in window 2 [-39,-20] 12 -9.5 occurrences in window 3 [-19,0] 13 10.5 occurrences in window 4 [1,20] 14 30.5 occurrences in window 5 [21,40] 15 50.5 occurrences in window 6 [41,60]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 2939 | 9.9 | 5 | 7.8e-02 | 0.31 | 0.50 | 1 | 333 | 609 | 547 | 567 | 597 | 286 |
| a | a | 3052 | 8.4 | 5 | 1.3e-01 | 0.54 | 0.27 | 2 | 313 | 651 | 576 | 581 | 601 | 330 |
| c | c | 3131 | 4.4 | 5 | 4.9e-01 | 2 | -0.29 | 3 | 320 | 589 | 633 | 643 | 613 | 333 |
| g | g | 3375 | 1.6 | 5 | 9.0e-01 | 3.6 | -0.56 | 4 | 349 | 670 | 684 | 657 | 688 | 327 |
Host name rsat Job started 2025-04-03.111014 Job done 2025-04-03.111014 Seconds 0.18 user 0.18 system 0.02 cuser 0 ; csystem 0