/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	17	66
		file1	2	11	45
		file1	3	12	45
		file1	4	15	71
		file1	5	10	26
		file1	6	16	74
		file1	7	13	65
		file1	8	13	53
		file1	9	14	32
		file1	10	11	100
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.111011_2025-04-03.111011_OYKgLb/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		17		66
		file2		2		11		45
		file2		3		12		45
		file2		4		15		71
		file2		5		10		26
		file2		6		16		74
		file2		7		13		65
		file2		8		13		53
		file2		9		14		32
		file2		10		11		100
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.995 0.937 16 17 16 17 0.9412 1.0000 0.9412 D -1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.995 0.937 17 16 16 17 0.9412 0.9412 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 0.969 0.909 16 15 15 16 0.9375 0.9375 1.0000 R 1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 0.969 0.909 15 16 15 16 0.9375 1.0000 0.9375 R 0
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 0.940 0.855 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m5 0.940 0.855 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 0.962 0.849 15 17 15 17 0.8824 1.0000 0.8824 R 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 0.962 0.849 17 15 15 17 0.8824 0.8824 1.0000 R 2
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m4 0.964 0.826 12 14 12 14 0.8571 1.0000 0.8571 D -1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m3 0.964 0.826 14 12 12 14 0.8571 0.8571 1.0000 D 1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.941 0.765 13 16 13 16 0.8125 1.0000 0.8125 R -3
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.941 0.765 16 13 13 16 0.8125 0.8125 1.0000 R 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 0.971 0.728 13 15 12 16 0.7500 0.9231 0.8000 D -3
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 0.971 0.728 15 13 12 16 0.7500 0.8000 0.9231 D 3
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 0.954 0.716 13 15 12 16 0.7500 0.9231 0.8000 R -3
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 0.954 0.716 15 13 12 16 0.7500 0.8000 0.9231 R -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.925 0.707 13 17 13 17 0.7647 1.0000 0.7647 R -3
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.925 0.707 17 13 13 17 0.7647 0.7647 1.0000 R 1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 0.786 0.665 13 11 11 13 0.8462 0.8462 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m3 0.786 0.665 11 13 11 13 0.8462 1.0000 0.8462 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 0.940 0.664 13 16 12 17 0.7059 0.9231 0.7500 D -4
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 0.940 0.664 16 13 12 17 0.7059 0.7500 0.9231 D 4
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.781 0.661 13 11 11 13 0.8462 0.8462 1.0000 D 2
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.781 0.661 11 13 11 13 0.8462 1.0000 0.8462 D -2
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 0.898 0.658 15 11 11 15 0.7333 0.7333 1.0000 R 1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 0.898 0.658 11 15 11 15 0.7333 1.0000 0.7333 R -3
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.930 0.620 17 13 12 18 0.6667 0.7059 0.9231 D 5
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.930 0.620 13 17 12 18 0.6667 0.9231 0.7059 D -5
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.860 0.592 11 16 11 16 0.6875 1.0000 0.6875 D -4
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.860 0.592 16 11 11 16 0.6875 0.6875 1.0000 D 4
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 0.868 0.562 17 11 11 17 0.6471 0.6471 1.0000 D 5
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 0.868 0.562 11 17 11 17 0.6471 1.0000 0.6471 D -5
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 0.778 0.519 15 10 10 15 0.6667 0.6667 1.0000 D 1
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 0.778 0.519 10 15 10 15 0.6667 1.0000 0.6667 D -1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 0.965 0.511 13 13 9 17 0.5294 0.6923 0.6923 R -4
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 0.965 0.511 13 13 9 17 0.5294 0.6923 0.6923 R -4
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 0.704 0.414 17 10 10 17 0.5882 0.5882 1.0000 R 6
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 0.704 0.414 10 17 10 17 0.5882 1.0000 0.5882 R -1 
 Host name	rsat
 Job started	2025-04-03.111029
 Job done	2025-04-03.111037
 Seconds	0.38
	user	0.38
	system	0.27
	cuser	7.22
;	csystem	1.2