/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	17	81
		file1	2	13	55
		file1	3	12	48
		file1	4	10	26
		file1	5	17	81
		file1	6	17	82
		file1	7	15	48
		file1	8	12	49
		file1	9	12	88
		file1	10	12	34
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		17		81
		file2		2		13		55
		file2		3		12		48
		file2		4		10		26
		file2		5		17		81
		file2		6		17		82
		file2		7		15		48
		file2		8		12		49
		file2		9		12		88
		file2		10		12		34
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 0.995 0.995 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 0.995 0.995 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 0.994 0.994 17 17 17 17 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 0.994 0.994 17 17 17 17 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 0.984 0.853 15 13 13 15 0.8667 0.8667 1.0000 R 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m2 0.984 0.853 13 15 13 15 0.8667 1.0000 0.8667 R -1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 0.954 0.795 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m4 0.954 0.795 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 0.799 0.738 12 13 12 13 0.9231 1.0000 0.9231 R -1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m3 0.799 0.738 13 12 12 13 0.9231 0.9231 1.0000 R 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.862 0.670 17 15 14 18 0.7778 0.8235 0.9333 R -1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.862 0.670 15 17 14 18 0.7778 0.9333 0.8235 R -3
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.858 0.668 15 17 14 18 0.7778 0.9333 0.8235 D -3
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.858 0.668 17 15 14 18 0.7778 0.8235 0.9333 D 3
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 0.934 0.659 17 12 12 17 0.7059 0.7059 1.0000 D 5
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 0.934 0.659 12 17 12 17 0.7059 1.0000 0.7059 D -5
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 0.928 0.655 12 17 12 17 0.7059 1.0000 0.7059 R -3
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m4 0.928 0.655 17 12 12 17 0.7059 0.7059 1.0000 R 2
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 0.841 0.654 17 15 14 18 0.7778 0.8235 0.9333 R -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 0.841 0.654 15 17 14 18 0.7778 0.9333 0.8235 R -3
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 0.921 0.650 17 12 12 17 0.7059 0.7059 1.0000 D 3
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m1 0.921 0.650 12 17 12 17 0.7059 1.0000 0.7059 D -3
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 0.850 0.650 13 17 13 17 0.7647 1.0000 0.7647 D 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m2 0.850 0.650 17 13 13 17 0.7647 0.7647 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 0.919 0.649 17 12 12 17 0.7059 0.7059 1.0000 R 2
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m1 0.919 0.649 12 17 12 17 0.7059 1.0000 0.7059 R -3
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 0.846 0.647 13 17 13 17 0.7647 1.0000 0.7647 R 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m2 0.846 0.647 17 13 13 17 0.7647 0.7647 1.0000 R 4
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.911 0.643 17 12 12 17 0.7059 0.7059 1.0000 D 5
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.911 0.643 12 17 12 17 0.7059 1.0000 0.7059 D -5
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 0.909 0.642 17 12 12 17 0.7059 0.7059 1.0000 R 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 0.909 0.642 12 17 12 17 0.7059 1.0000 0.7059 R -5
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 0.801 0.641 15 12 12 15 0.8000 0.8000 1.0000 D 2
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 0.801 0.641 12 15 12 15 0.8000 1.0000 0.8000 D -2
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m2 0.798 0.638 12 15 12 15 0.8000 1.0000 0.8000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m4 0.798 0.638 15 12 12 15 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 0.824 0.630 17 13 13 17 0.7647 0.7647 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m5 0.824 0.630 13 17 13 17 0.7647 1.0000 0.7647 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 0.750 0.590 13 12 11 14 0.7857 0.8462 0.9167 R 2
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 0.750 0.590 12 13 11 14 0.7857 0.9167 0.8462 R 1
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 0.944 0.567 12 12 9 15 0.6000 0.7500 0.7500 R -3
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m4 0.944 0.567 12 12 9 15 0.6000 0.7500 0.7500 R -3 
 Host name	rsat
 Job started	2025-04-03.123220
 Job done	2025-04-03.123230
 Seconds	0.35
	user	0.35
	system	0.37
	cuser	7.57
;	csystem	1.35