; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	21	16	9	1	19	0	0	82	0	0	14	82	0	3	45	27	17
c	19	20	10	0	63	0	1	0	49	0	66	0	0	77	14	18	21
g	24	17	13	81	0	0	70	0	33	0	2	0	63	0	11	18	23
t	18	29	50	0	0	82	11	0	0	82	0	0	19	2	12	19	21
//
; Sites	82
>site_0
CGCGCTGAGTCAGCATC
>site_1
GATGCTGACTCAGCGCG
>site_2
GCTGCTTACTCAGCACA
>site_3
TGTGCTGAGTAAGCAGC
>site_4
CGCGCTGAGTCATCCGC
>site_5
GCGGATGACTCAGCGCG
>site_6
TTTGCTTAGTCATCATT
>site_7
AATGATGACTAAGCAAA
>site_8
AATGATGAGTCAGCAGT
>site_9
ACTGCTGACTCATCATT
>site_10
CTGGATGACTCAGCCGG
>site_11
ACGGCTGACTCATTTTG
>site_12
GCGGCTGAGTCAGCAGG
>site_13
CCTGCTGACTCAGCCGC
>site_14
AATGATGACTAAGCGAG
>site_15
GGAGCTGAGTCAGCAGG
>site_16
CCTGCTGACTCAGCTCC
>site_17
TGTGATGAGTCAGCAGC
>site_18
GCTGCTGACTCATCACA
>site_19
AATGATGACTAAGCGAG
>site_20
CAAGCTGAGTAAGCAGA
>site_21
TCTGCTTACTCAGCTTG
>site_22
GTGGCTGACTCAGCCAG
>site_23
CTGGCTGAGTCAGCCAC
>site_24
GGCGATGAGTCAGCGAC
>site_25
GTCGCTGACTCATCGCC
>site_26
GTTGCTGAGTCAGCAAG
>site_27
CTTGCTGACTCAGCAAC
>site_28
CTGGCTTACTCATCATT
>site_29
GGAGCTGAGTCAGCAGT
>site_30
ACTGCTGACTCAGCTCC
>site_31
ATTGATTACTAAGCATA
>site_32
GATGCTGACTAAGACTG
>site_33
CTTGCTGAGTCATCACT
>site_34
AGTGATGACTCAGCAAG
>site_35
TTTGATGAGTCATCATA
>site_36
TATGATGACTCATCAAA
>site_37
CCTGCTTACTGAGCAGT
>site_38
TATGCTTACTCAGCGGA
>site_39
TCCGCTGAGTAAGCATA
>site_40
TCCGCTGACTGATCCTT
>site_41
CATGCTGACTAATAATT
>site_42
CTTGATGACTCATCTAT
>site_43
TCAGCTGACTCAGCAGA
>site_44
TCTGCTGAGTCAGCTGA
>site_45
GATGCTGAGTCAGCTAA
>site_46
TTAGCTGACTCAGCATC
>site_47
GCCACTGACTCAGCAAT
>site_48
ATTGCTGAGTCAGTGGC
>site_49
ATCGCTTACTCATCTCT
>site_50
GCAGCTGACTCAGCTCC
>site_51
GGAGCTGAGTCAGCTGC
>site_52
TCTGCTTACTAATCACG
>site_53
CGGGCTGACTCAGCGAT
>site_54
ATCGCTGAGTCAGCCCG
>site_55
ATTGCTTACTCAGCAAT
>site_56
ATTGCTGAGTAAGCAAT
>site_57
ACGGCTGACTCAGCATC
>site_58
GATGCTGAGTCAGCCGT
>site_59
TTTGCTTAGTCATCACA
>site_60
TGTGATGACTAAGCAAA
>site_61
CGTGCTGAGTCAGCCTA
>site_62
TAGGCTGACTCAGCACG
>site_63
GTGGCTGACTCAGCCAC
>site_64
GTGGCTGAGTCAGCCAC
>site_65
AGTGCTGACTCAGCAGG
>site_66
CCTGCTGAGTCAGCACT
>site_67
GTTGCTGAGTCATCAAA
>site_68
TTTGATGACTCAGCAAC
>site_69
ATTGATGACTCAGCAAT
>site_70
ATTGCTGAGTCATCAAT
>site_71
ATTGATCACTCAGCATG
>site_72
GATGCTGAGTCAGCAAG
>site_73
CTTGCTGACTCAGCATC
>site_74
TGTGCTGACTCAGCCTG
>site_75
CAGGCTGAGTCAGCACA
>site_76
GGCGCTGACTCAGCTAG
>site_77
CTAGCTGAGTCAGCGCC
>site_78
AGTGATGAGTCAGCTAT
>site_79
ATAGCTGACTCATCACT
>site_80
GGTGATGACTAAGCGAG
>site_81
GATGCTGACTAAGACTG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	12	12	1	1	44	2	0	36	46	1	1	35	14	12	11
c	3	22	3	3	4	7	2	11	0	0	45	2	6	9	14
g	30	2	1	18	0	39	0	1	0	43	1	3	20	15	7
t	3	12	43	26	0	0	46	0	2	4	1	8	8	12	16
//
; Sites	48
>site_0
GCTGAGTCAGCATCG
>site_1
GCTGAGTAAGCAGCT
>site_2
GCTTAGTATTCAGGC
>site_3
GATGACTAAGCAAAT
>site_4
GATGAGTCAGCAGTA
>site_5
GCTTAGTATTCAGGC
>site_6
GATTAGTAAGCAACT
>site_7
GCTGAGTCAGCAGGC
>site_8
ATTTAGTAAGCTAGG
>site_9
ATTTAGTAAGCTAGT
>site_10
GATTAGTAAGTGATT
>site_11
GCTGAGTCAGCAGGT
>site_12
GATGAGTCAGCAGCT
>site_13
CTCTAATAAGCAGTG
>site_14
ATTTAGTAAGCTAGA
>site_15
GCTGAGTAAGCAGAT
>site_16
AGTCAGCAAGCATAC
>site_17
ATTTAGTAAGCTAGT
>site_18
ATTTAGTAAGCTAGT
>site_19
GATGAGTAAGCCAGA
>site_20
GCTGAGTCAGCAGTC
>site_21
GATTACTAAGCATAT
>site_22
GCTTAGTAATCAATC
>site_23
TCTTAGTCAGCATCT
>site_24
ACTCAGCAAGCACCA
>site_25
ATTACGTAAGCACAT
>site_26
GCTCAGTAAGCAGGC
>site_27
GCTTACTGAGCAGTA
>site_28
GATTCGTAAGCTTAC
>site_29
GTTTACTAAGCTGGA
>site_30
GCTTAGTAAACCATC
>site_31
GCTGAGTAAGCATAA
>site_32
ATTGACTAAGCAGCA
>site_33
TATTAGTCAGCATGC
>site_34
GGTTAGTAAGGGGCG
>site_35
GATGAGTAAGCGATA
>site_36
GCTTACTAATCACGA
>site_37
GATTAGTAAGCAGAG
>site_38
GCTGAGTAAGCAATC
>site_39
GATGACTAAGCAAAT
>site_40
GCTGAGTCAGCACTA
>site_41
ACAGAGTAAGCTGAC
>site_42
CTTTCGTAAGAACAC
>site_43
ATGTCGTAAGCAGGG
>site_44
GCTGAGTCAGCACAC
>site_45
CTCTAATAAGCAGTG
>site_46
ACCTAGTAAGCAGTT
>site_47
TCTTAGTCAGCATCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	2	3	49	0	0	1	47	0	0	44	14	7
c	4	4	0	5	1	47	2	1	48	4	8	9
g	5	26	0	43	3	1	0	15	0	0	9	13
t	38	16	0	1	45	0	0	33	1	1	18	20
//
; Sites	49
>site_0
TGAGTCAGCATC
>site_1
TGAGTCATCCGC
>site_2
TTAGTCATCATT
>site_3
TGACTCATCATT
>site_4
TGAGTCAGCAGT
>site_5
TGAGTCATCCAG
>site_6
CAATTCATCAAG
>site_7
CGAGGCATCATG
>site_8
TGAGTCAGCAGG
>site_9
TTAGTCATCATT
>site_10
TTAGTCATCATT
>site_11
TTAGTCATCTGA
>site_12
TGAGTCAGCAGG
>site_13
TGACTCATCACA
>site_14
TGAGTCAGCAGC
>site_15
TTAGTCATCATT
>site_16
TGAGTCAGCAAG
>site_17
TTAGTCATCATT
>site_18
TTAGTCATTATT
>site_19
TTACTCATCATT
>site_20
TGAGTCAGCAGT
>site_21
TAAGTCCTCATT
>site_22
GCAGTCATCCAT
>site_23
TTAGTAATCAAT
>site_24
TTAGTCAGCATC
>site_25
TGAGTCATCACT
>site_26
TGACTCATCAAA
>site_27
TGAGTCATCATA
>site_28
TTAGTCAGCATG
>site_29
TGAGTCATCAAG
>site_30
TGAGTCCTCAAT
>site_31
CGAGGCATCATG
>site_32
TTAGTCATCACA
>site_33
TGAGTCAGCACT
>site_34
GTAGTCACCAGC
>site_35
ACAGTCATCATC
>site_36
TGAGTCATCAAA
>site_37
TGAGTCATCAAT
>site_38
ACAGTCAGCAGG
>site_39
CGAGGCATCATG
>site_40
TGAGTGATCAAT
>site_41
TGAGTCAGCAAG
>site_42
GTAGCCATCACG
>site_43
TGAGTCAGCACA
>site_44
TGACTCATCACT
>site_45
GAAGTCAGCAAC
>site_46
GCAGTCATCCAT
>site_47
TTAGTCATCACC
>site_48
TTAGTCAGCATC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	6	23	2	0	86	3	2	53	83	7	9	36
c	12	44	0	1	0	78	1	31	2	11	59	13
g	63	10	1	76	0	6	2	3	2	51	3	23
t	7	11	85	11	2	1	83	1	1	19	17	16
//
; Sites	88
>site_0
GCTGACTCAGCG
>site_1
GCTGAGTAAGCA
>site_2
GATGACTCAGCG
>site_3
GATGACTAAGCA
>site_4
GCTGACTCATCA
>site_5
GATGACTCAGCC
>site_6
GCTGACTCATTT
>site_7
CATGACTTAGTG
>site_8
CGTCACTAAGTC
>site_9
GGTGACTGAGAT
>site_10
GCTTACTAATCT
>site_11
GCTGACTCAGCC
>site_12
AGTGACGAAGCG
>site_13
GATGACTAAGCG
>site_14
GCTTACTAAATG
>site_15
TTTGACTACCTA
>site_16
GCTTACTAAATG
>site_17
GATGACTAATCG
>site_18
GATGACTAATCA
>site_19
GCTGACTCAGCT
>site_20
TTTGAATAACTC
>site_21
CTTGAATAACCT
>site_22
GCTGACTCATCA
>site_23
CCTGACCAAGGC
>site_24
GATGACTAAGCG
>site_25
GCTTACTAAATG
>site_26
CTGGACTAATCA
>site_27
GCTGAGTAAGCA
>site_28
TCTGATTAACAT
>site_29
GCTGACTCAGCC
>site_30
GCTGACTCATCG
>site_31
GCTGACTCAGCA
>site_32
TATTACTAACTG
>site_33
GCTTACTAAATG
>site_34
GATGACTAATCG
>site_35
AATGACTAATCG
>site_36
GCTTACTAAATA
>site_37
TCTGTCTAACCG
>site_38
GATGAGTAAGCC
>site_39
GCTGACTCAGCT
>site_40
CGTGACTCATGA
>site_41
GGTGACTAGCCA
>site_42
GATTACTAAGCA
>site_43
GCTGACTAAGAC
>site_44
GATGACTCAGCA
>site_45
CAAGACTAAATT
>site_46
GATGACTCATCA
>site_47
CTAGACTAACCT
>site_48
GTTTACTAAGCT
>site_49
GCTGAGTAAGCA
>site_50
TTTGACTAAATG
>site_51
ATTGACTAAGCA
>site_52
GCTGACTAATAA
>site_53
GATGACTCATCT
>site_54
GCTGACTCAGCA
>site_55
CCTGTCTAAGTG
>site_56
GGTGACTGAGAT
>site_57
GCTGACTCAGCA
>site_58
GTTGACAAATCC
>site_59
ACTGACTCAGCA
>site_60
CCTTACTAACCC
>site_61
GGTGACTGAGAT
>site_62
GATGAGTAAGCG
>site_63
CGTGACTATTTA
>site_64
GCTGACTCAGCT
>site_65
GTTGAATAAGTA
>site_66
GCTTACTAATCA
>site_67
GCTGACTCAGCG
>site_68
GCTGAGTAAGCA
>site_69
GCTGACTCAGCA
>site_70
GATGACTAAGCA
>site_71
GCTGACTCAGCA
>site_72
ACTGACTAAGAG
>site_73
GCTGACTCAGCC
>site_74
GCTGACTCAGCA
>site_75
GGTGACTACCAA
>site_76
GATGACTCAGCA
>site_77
GATGACTCAGCA
>site_78
TTTGACAAAGGT
>site_79
GCTGACTCAGCA
>site_80
CCTGACTAAGTG
>site_81
GCTGACTCAGCC
>site_82
GCTGACTCAGCT
>site_83
GCTGACTCATCA
>site_84
AATGACGAATCA
>site_85
GGTGACTAGCCA
>site_86
GATGACTAAGCG
>site_87
GCTGACTAAGAC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
a	7	11	24	32	29	1	0	30	0	3	11	10
c	1	1	2	1	2	1	0	1	0	1	4	8
g	20	17	1	1	3	29	34	2	34	29	12	8
t	6	5	7	0	0	3	0	1	0	1	7	8
//
; Sites	34
>site_0
GAAAAGGCGGGC
>site_1
AGTAAGGAGGAG
>site_2
GAAGAGGAGGGA
>site_3
TTAAAGGAGCAG
>site_4
GGAAAGGAGGGA
>site_5
GGAAAGGAGGGT
>site_6
GGTAAGGAGGGT
>site_7
GTTAAGGAGGGT
>site_8
GTAAAGGAGGGA
>site_9
GGAAAGGAGGGT
>site_10
GGAAAGGAGATC
>site_11
TAAAGGGAGGAG
>site_12
GGAAAGGTGGGG
>site_13
CCAAATGAGGAC
>site_14
AAAAATGAGGCT
>site_15
ATAAAGGGGGTA
>site_16
AGTACGGAGGTA
>site_17
GAAAAGGAGGAA
>site_18
GAAAAGGAGGAA
>site_19
AATAAGGAGGCC
>site_20
GGAAAAGAGGAG
>site_21
GAACAGGAGGTA
>site_22
TGCAACGAGGGT
>site_23
GGAAATGAGGCT
>site_24
GGAAAGGAGATC
>site_25
TAAAGGGAGGAG
>site_26
TGTAAGGAGTAC
>site_27
AAAAAGGGGGAA
>site_28
GTCAAGGAGGCC
>site_29
GGGAAGGAGGGG
>site_30
GGAAAGGAGGGT
>site_31
AGTACGGAGGTA
>site_32
TAAAGGGAGGAG
>site_33
GGAAAGGAGATC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2025-04-03.123215
; Job done	2025-04-03.123217
; Seconds	0.13
;	user	0.13
;	system	0.06
;	cuser	1.2
;	csystem	0.24
