RSAT - peak-motifs result

Analysis: 20vg_N10 (03/04/2025 12:32)

peak-motifs  -v 1 -title 20vg_N10 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tgctgagtcagca (sig=11.12; e-value=7.6e-12) RC: tgctgactcagca oligos_6nt_mkv2_m2 assembly: tgcttacta (sig=3.95; e-value=0.00011) RC: tagtaagca oligos_6nt_mkv2_m3 assembly: ccgtacgg (sig=1.92; e-value=0.012) RC: ccgtacgg oligos_6nt_mkv2_m4 assembly: aaggag (sig=1.73; e-value=0.019) RC: ctcctt oligos_6nt_mkv2_m5 assembly: tgctgagtcatca (sig=11.12; e-value=7.6e-12) RC: tgatgactcagca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: tgctgactcagca (sig=20.72; e-value=1.9e-21) RC: tgctgagtcagca oligos_7nt_mkv2_m2 assembly: ttagtaagcag (sig=6.69; e-value=2e-07) RC: ctgcttactaa oligos_7nt_mkv2_m3 assembly: agtcatca (sig=5.07; e-value=8.5e-06) RC: tgatgact oligos_7nt_mkv2_m4 assembly: tgactaag (sig=3.55; e-value=0.00028) RC: cttagtca oligos_7nt_mkv2_m5 assembly: aaaggagg (sig=1.74; e-value=0.018) RC: cctccttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=11.12; evalue=7.6e-12 mttGCTGAsTCAGCaay RTTGCTGASTCAGCAAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 51 (34.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624398-624498(.)) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=3.95; evalue=0.00011 yyTGCTKACTmAk MTKAGTMAGCARR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 47 (31.33%) Max nb of predicted sites per peak: 2  (ChrVI_A_nidulans_FGSC_A4:1538156-1538256(.)) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=1.92; evalue=0.012 thyCGTACGrka TMYCGTACGRDA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (7.33%) Max nb of predicted sites per peak: 3  (ChrV_A_nidulans_FGSC_A4:3118085-3118185(.)) Mean nb of predicted sites per peak: 2.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=1.73; evalue=0.019 gwAAGGAGrg CYCTCCTTWC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (9.33%) Max nb of predicted sites per peak: 5  (ChrII_A_nidulans_FGSC_A4:3411611-3411711(.)) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=11.12; evalue=7.6e-12 sttGCTGAsTCAkCawy RWTGMTGASTCAGCAAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (34.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624398-624498(.)) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=20.72; evalue=1.9e-21 rttGCTGAsTCAGCaab VTTGCTGASTCAGCAAY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 51 (34.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624398-624498(.)) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=6.69; evalue=2e-07 rhTkAGTAAGCArdy RHYTGCTTACTMADY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 53 (35.33%) Max nb of predicted sites per peak: 3  (ChrV_A_nidulans_FGSC_A4:3331023-3331123(.)) Mean nb of predicted sites per peak: 1.70	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=5.07; evalue=8.5e-06 TkAGTCAKCAwt AWTGMTGACTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 46 (30.67%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:1177366-1177466(.)) Mean nb of predicted sites per peak: 1.28	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=3.55; evalue=0.00028 gmTGACTmAgca TGCTKAGTCAKC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (34.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624398-624498(.)) Mean nb of predicted sites per peak: 1.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.74; evalue=0.018 grAAAGGAGGra TYCCTCCTTTYC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (8.00%) Max nb of predicted sites per peak: 5  (ChrII_A_nidulans_FGSC_A4:3411611-3411711(.)) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 20vg_N10 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123202_2025-04-03.123202_wcmL4R/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab