/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 20vg_N11 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	150
	Sum of sequence lengths      	15000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	14850
 Oligonucleotide statistics:
	Total occurrences    	11797
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	14850
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	150	1500
	2	-2	[-39,-20]	-29.5	150	3000
	3	-1	[-19,0]	-9.5	150	3000
	4	0	[1,20]	10.5	150	3000
	5	1	[21,40]	30.5	150	3000
	6	2	[41,60]	50.5	150	1350

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
cc cc 927 23.6 5 2.6e-04 0.0041 2.38 1 66 189 237 170 188 77
tt tt 679 21.7 5 5.9e-04 0.0094 2.03 2 98 154 117 123 138 49
gg gg 944 18.3 5 2.6e-03 0.042 1.38 3 84 174 183 212 174 117
aa aa 656 17.9 5 3.1e-03 0.049 1.31 4 56 144 135 106 131 84
tg tg 769 10.9 5 5.3e-02 0.85 0.07 5 97 156 134 149 172 61
at at 619 10.5 5 6.2e-02 0.99 0.00 6 84 121 107 120 128 59
ca ca 758 9.0 5 1.1e-01 1.8 -0.25 7 62 158 144 157 149 88
ct ct 836 8.9 5 1.1e-01 1.8 -0.26 8 82 178 182 136 181 77
ta ta 573 7.6 5 1.8e-01 2.9 -0.46 9 75 111 108 121 115 43
gt gt 642 6.7 5 2.4e-01 3.9 -0.59 10 76 132 112 142 130 50
ag ag 863 4.6 5 4.6e-01 7.4 -0.87 11 82 166 167 191 167 90
cg cg 611 4.4 5 4.9e-01 7.9 -0.89 12 71 112 132 126 123 47
ga ga 720 4.4 5 5.0e-01 8 -0.90 13 76 135 130 149 159 71
tc tc 759 3.9 5 5.6e-01 8.9 -0.95 14 78 155 162 132 159 73
ac ac 562 1.6 5 9.0e-01 14 -1.16 15 52 115 111 109 124 51
gc gc 879 1.1 5 9.5e-01 15 -1.18 16 93 176 182 183 168 77 
 Host name	rsat
 Job started	2025-04-03.123240
 Job done	2025-04-03.123240
 Seconds	0.17
	user	0.17
	system	0.01
	cuser	0
;	csystem	0