One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=14; shift=0; ncol=14; wrGrAAAGGAGrdm ; Alignment reference a 11 12 1 21 31 29 34 0 1 27 2 18 9 10 c 6 4 3 2 2 1 0 1 0 2 0 2 4 11 g 6 12 29 10 0 4 0 33 33 4 31 13 12 7 t 11 6 1 1 1 0 0 0 0 1 1 1 9 6

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; wrGrAAAGGAGrdm ; cor=; Ncor= a 11 12 1 21 31 29 34 0 1 27 2 18 9 10 c 6 4 3 2 2 1 0 1 0 2 0 2 4 11 g 6 12 29 10 0 4 0 33 33 4 31 13 12 7 t 11 6 1 1 1 0 0 0 0 1 1 1 9 6

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m2; m=2/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.959862; krGrAAAGGAGGrd ; cor=; Ncor= a 11 16 5 27 39 44 42 2 2 40 2 9 13 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 12 t 14 6 5 2 5 0 0 2 0 1 1 1 10 13

oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m2; m=3/3; ncol2=12; w=0; offset=1; strand=D; shift=1; score=0.827098; -rgRAAAGGAGrd- ; cor=; Ncor= a 0 19 8 34 43 48 47 1 1 42 3 14 13 0 c 0 10 9 1 2 1 0 0 0 0 2 6 10 0 g 0 16 24 13 1 1 3 48 49 8 44 25 13 0 t 0 5 9 2 4 0 0 1 0 0 1 5 14 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=2; ncol=15; --GcTGAGTCAGCmr ; Alignment reference a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=2; score= 1; --GcTGAGTCAGCmr ; cor=; Ncor= a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=2/3; ncol2=16; w=-2; offset=-2; strand=D; shift=0; score=0.794519; htGCTGAsTCAGCad ; cor=; Ncor= a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13

oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=3/3; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.71807; ----tsAGTAAGCwm ; cor=; Ncor= a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; bmrAAAGGGGCkd ; Alignment reference a 5 7 13 17 19 24 0 0 0 3 0 5 8 c 6 8 3 4 5 0 0 2 0 0 19 4 2 g 7 5 7 0 0 0 24 22 24 21 3 9 8 t 6 4 1 3 0 0 0 0 0 0 2 6 6

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; bmrAAAGGGGCkd ; cor=; Ncor= a 5 7 13 17 19 24 0 0 0 3 0 5 8 c 6 8 3 4 5 0 0 2 0 0 19 4 2 g 7 5 7 0 0 0 24 22 24 21 3 9 8 t 6 4 1 3 0 0 0 0 0 0 2 6 6

oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=2/4; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.814181; -tgAAAGGGGCtw ; cor=; Ncor= a 0 5 5 17 19 20 0 0 0 1 0 1 9 c 0 5 4 2 2 0 0 2 0 0 17 1 1 g 0 4 7 1 0 1 21 19 21 20 1 5 5 t 0 7 5 1 0 0 0 0 0 0 3 14 6

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=3/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.683888; rgRAAAGGAGrd- ; cor=; Ncor= a 19 8 34 43 48 47 1 1 42 3 14 13 0 c 10 9 1 2 1 0 0 0 0 2 6 10 0 g 16 24 13 1 1 3 48 49 8 44 25 13 0 t 5 9 2 4 0 0 1 0 0 1 5 14 0

oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m3; m=4/4; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.658646; --ktCAGGGGCrm ; cor=; Ncor= a 0 0 5 9 1 38 0 0 1 2 2 15 14 c 0 0 8 7 37 0 2 4 1 3 36 7 13 g 0 0 15 4 0 0 35 34 34 31 0 10 5 t 0 0 10 18 0 0 1 0 2 2 0 6 6

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=11; shift=2; ncol=13; --ktCAGGGGCrm ; Alignment reference a 0 0 5 9 1 38 0 0 1 2 2 15 14 c 0 0 8 7 37 0 2 4 1 3 36 7 13 g 0 0 15 4 0 0 35 34 34 31 0 10 5 t 0 0 10 18 0 0 1 0 2 2 0 6 6

oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 1; --ktCAGGGGCrm ; cor=; Ncor= a 0 0 5 9 1 38 0 0 1 2 2 15 14 c 0 0 8 7 37 0 2 4 1 3 36 7 13 g 0 0 15 4 0 0 35 34 34 31 0 10 5 t 0 0 10 18 0 0 1 0 2 2 0 6 6

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=2/3; ncol2=13; w=-2; offset=-2; strand=D; shift=0; score=0.658646; bmrAAAGGGGCkd ; cor=; Ncor= a 5 7 13 17 19 24 0 0 0 3 0 5 8 c 6 8 3 4 5 0 0 2 0 0 19 4 2 g 7 5 7 0 0 0 24 22 24 21 3 9 8 t 6 4 1 3 0 0 0 0 0 0 2 6 6

oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=3/3; ncol2=13; w=-1; offset=-1; strand=D; shift=1; score=0.609968; -tgAAAGGGGCtw ; cor=; Ncor= a 0 5 5 17 19 20 0 0 0 1 0 1 9 c 0 5 4 2 2 0 0 2 0 0 17 1 1 g 0 4 7 1 0 1 21 19 21 20 1 5 5 t 0 7 5 1 0 0 0 0 0 0 3 14 6

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift1 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=12; shift=1; ncol=13; -rgRAAAGGAGrd ; Alignment reference a 0 19 8 34 43 48 47 1 1 42 3 14 13 c 0 10 9 1 2 1 0 0 0 0 2 6 10 g 0 16 24 13 1 1 3 48 49 8 44 25 13 t 0 5 9 2 4 0 0 1 0 0 1 5 14

oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/5; ncol2=12; w=0; offset=0; strand=D; shift=1; score= 1; -rgRAAAGGAGrd ; cor=; Ncor= a 0 19 8 34 43 48 47 1 1 42 3 14 13 c 0 10 9 1 2 1 0 0 0 0 2 6 10 g 0 16 24 13 1 1 3 48 49 8 44 25 13 t 0 5 9 2 4 0 0 1 0 0 1 5 14

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=2/5; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.839753; krGrAAAGGAGGr ; cor=; Ncor= a 11 16 5 27 39 44 42 2 2 40 2 9 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 t 14 6 5 2 5 0 0 2 0 1 1 1 10

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=3/5; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.827098; wrGrAAAGGAGrd ; cor=; Ncor= a 11 12 1 21 31 29 34 0 1 27 2 18 9 c 6 4 3 2 2 1 0 1 0 2 0 2 4 g 6 12 29 10 0 4 0 33 33 4 31 13 12 t 11 6 1 1 1 0 0 0 0 1 1 1 9

oligos_6nt_mkv2_m4_shift1 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m4; m=4/5; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.683888; -bmrAAAGGGGCk ; cor=; Ncor= a 0 5 7 13 17 19 24 0 0 0 3 0 5 c 0 6 8 3 4 5 0 0 2 0 0 19 4 g 0 7 5 7 0 0 0 24 22 24 21 3 9 t 0 6 4 1 3 0 0 0 0 0 0 2 6

oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m3; m=5/5; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.55945; --tgAAAGGGGCt ; cor=; Ncor= a 0 0 5 5 17 19 20 0 0 0 1 0 1 c 0 0 5 4 2 2 0 0 2 0 0 17 1 g 0 0 4 7 1 0 1 21 19 21 20 1 5 t 0 0 7 5 1 0 0 0 0 0 0 3 14

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; htGCTGAsTCAGCadc ; Alignment reference a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 7 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 20 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 10 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13 11

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/3; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; htGCTGAsTCAGCadc ; cor=; Ncor= a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 7 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 20 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 10 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13 11

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=2/3; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.794519; --GcTGAGTCAGCmr- ; cor=; Ncor= a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 0 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 0 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 0 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11 0

oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=3/3; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.573574; ----tsAGTAAGCwm- ; cor=; Ncor= a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 0 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 0 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 0 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift4 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----tsAGTAAGCwm ; Alignment reference a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11

oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=4; score= 1; ----tsAGTAAGCwm ; cor=; Ncor= a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11

oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/3; ncol2=13; w=-2; offset=-2; strand=D; shift=2; score=0.71807; --GcTGAGTCAGCmr ; cor=; Ncor= a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11

oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m1; m=3/3; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.573574; htGCTGAsTCAGCad ; cor=; Ncor= a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; krGrAAAGGAGGrd ; Alignment reference a 11 16 5 27 39 44 42 2 2 40 2 9 13 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 12 t 14 6 5 2 5 0 0 2 0 1 1 1 10 13

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; krGrAAAGGAGGrd ; cor=; Ncor= a 11 16 5 27 39 44 42 2 2 40 2 9 13 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 12 t 14 6 5 2 5 0 0 2 0 1 1 1 10 13

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=2/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.959862; wrGrAAAGGAGrdm ; cor=; Ncor= a 11 12 1 21 31 29 34 0 1 27 2 18 9 10 c 6 4 3 2 2 1 0 1 0 2 0 2 4 11 g 6 12 29 10 0 4 0 33 33 4 31 13 12 7 t 11 6 1 1 1 0 0 0 0 1 1 1 9 6

oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=3/3; ncol2=12; w=0; offset=1; strand=D; shift=1; score=0.839753; -rgRAAAGGAGrd- ; cor=; Ncor= a 0 19 8 34 43 48 47 1 1 42 3 14 13 0 c 0 10 9 1 2 1 0 0 0 0 2 6 10 0 g 0 16 24 13 1 1 3 48 49 8 44 25 13 0 t 0 5 9 2 4 0 0 1 0 0 1 5 14 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -tgAAAGGGGCtwr ; Alignment reference a 0 5 5 17 19 20 0 0 0 1 0 1 9 7 c 0 5 4 2 2 0 0 2 0 0 17 1 1 4 g 0 4 7 1 0 1 21 19 21 20 1 5 5 9 t 0 7 5 1 0 0 0 0 0 0 3 14 6 1

oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -tgAAAGGGGCtwr ; cor=; Ncor= a 0 5 5 17 19 20 0 0 0 1 0 1 9 7 c 0 5 4 2 2 0 0 2 0 0 17 1 1 4 g 0 4 7 1 0 1 21 19 21 20 1 5 5 9 t 0 7 5 1 0 0 0 0 0 0 3 14 6 1

oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=2/4; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.814181; bmrAAAGGGGCkd- ; cor=; Ncor= a 5 7 13 17 19 24 0 0 0 3 0 5 8 0 c 6 8 3 4 5 0 0 2 0 0 19 4 2 0 g 7 5 7 0 0 0 24 22 24 21 3 9 8 0 t 6 4 1 3 0 0 0 0 0 0 2 6 6 0

oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=3/4; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.609968; --ktCAGGGGCrm- ; cor=; Ncor= a 0 0 5 9 1 38 0 0 1 2 2 15 14 0 c 0 0 8 7 37 0 2 4 1 3 36 7 13 0 g 0 0 15 4 0 0 35 34 34 31 0 10 5 0 t 0 0 10 18 0 0 1 0 2 2 0 6 6 0

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m2; m=4/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.55945; rgRAAAGGAGrd-- ; cor=; Ncor= a 19 8 34 43 48 47 1 1 42 3 14 13 0 0 c 10 9 1 2 1 0 0 0 0 2 6 10 0 0 g 16 24 13 1 1 3 48 49 8 44 25 13 0 0 t 5 9 2 4 0 0 1 0 0 1 5 14 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=14; shift=0; ncol=14; wrGrAAAGGAGrdm ; Alignment reference a 11 12 1 21 31 29 34 0 1 27 2 18 9 10 c 6 4 3 2 2 1 0 1 0 2 0 2 4 11 g 6 12 29 10 0 4 0 33 33 4 31 13 12 7 t 11 6 1 1 1 0 0 0 0 1 1 1 9 6
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; wrGrAAAGGAGrdm ; cor=; Ncor= a 11 12 1 21 31 29 34 0 1 27 2 18 9 10 c 6 4 3 2 2 1 0 1 0 2 0 2 4 11 g 6 12 29 10 0 4 0 33 33 4 31 13 12 7 t 11 6 1 1 1 0 0 0 0 1 1 1 9 6
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m2; m=2/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.959862; krGrAAAGGAGGrd ; cor=; Ncor= a 11 16 5 27 39 44 42 2 2 40 2 9 13 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 12 t 14 6 5 2 5 0 0 2 0 1 1 1 10 13
oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m5 versus oligos_6nt_mkv2_m2; m=3/3; ncol2=12; w=0; offset=1; strand=D; shift=1; score=0.827098; -rgRAAAGGAGrd- ; cor=; Ncor= a 0 19 8 34 43 48 47 1 1 42 3 14 13 0 c 0 10 9 1 2 1 0 0 0 0 2 6 10 0 g 0 16 24 13 1 1 3 48 49 8 44 25 13 0 t 0 5 9 2 4 0 0 1 0 0 1 5 14 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=13; shift=2; ncol=15; --GcTGAGTCAGCmr ; Alignment reference a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=2; score= 1; --GcTGAGTCAGCmr ; cor=; Ncor= a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=2/3; ncol2=16; w=-2; offset=-2; strand=D; shift=0; score=0.794519; htGCTGAsTCAGCad ; cor=; Ncor= a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13
oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=3/3; ncol2=11; w=0; offset=2; strand=D; shift=4; score=0.71807; ----tsAGTAAGCwm ; cor=; Ncor= a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=13; shift=0; ncol=13; bmrAAAGGGGCkd ; Alignment reference a 5 7 13 17 19 24 0 0 0 3 0 5 8 c 6 8 3 4 5 0 0 2 0 0 19 4 2 g 7 5 7 0 0 0 24 22 24 21 3 9 8 t 6 4 1 3 0 0 0 0 0 0 2 6 6
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; bmrAAAGGGGCkd ; cor=; Ncor= a 5 7 13 17 19 24 0 0 0 3 0 5 8 c 6 8 3 4 5 0 0 2 0 0 19 4 2 g 7 5 7 0 0 0 24 22 24 21 3 9 8 t 6 4 1 3 0 0 0 0 0 0 2 6 6
oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=2/4; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.814181; -tgAAAGGGGCtw ; cor=; Ncor= a 0 5 5 17 19 20 0 0 0 1 0 1 9 c 0 5 4 2 2 0 0 2 0 0 17 1 1 g 0 4 7 1 0 1 21 19 21 20 1 5 5 t 0 7 5 1 0 0 0 0 0 0 3 14 6
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=3/4; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.683888; rgRAAAGGAGrd- ; cor=; Ncor= a 19 8 34 43 48 47 1 1 42 3 14 13 0 c 10 9 1 2 1 0 0 0 0 2 6 10 0 g 16 24 13 1 1 3 48 49 8 44 25 13 0 t 5 9 2 4 0 0 1 0 0 1 5 14 0
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m3; m=4/4; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.658646; --ktCAGGGGCrm ; cor=; Ncor= a 0 0 5 9 1 38 0 0 1 2 2 15 14 c 0 0 8 7 37 0 2 4 1 3 36 7 13 g 0 0 15 4 0 0 35 34 34 31 0 10 5 t 0 0 10 18 0 0 1 0 2 2 0 6 6

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=11; shift=2; ncol=13; --ktCAGGGGCrm ; Alignment reference a 0 0 5 9 1 38 0 0 1 2 2 15 14 c 0 0 8 7 37 0 2 4 1 3 36 7 13 g 0 0 15 4 0 0 35 34 34 31 0 10 5 t 0 0 10 18 0 0 1 0 2 2 0 6 6
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 1; --ktCAGGGGCrm ; cor=; Ncor= a 0 0 5 9 1 38 0 0 1 2 2 15 14 c 0 0 8 7 37 0 2 4 1 3 36 7 13 g 0 0 15 4 0 0 35 34 34 31 0 10 5 t 0 0 10 18 0 0 1 0 2 2 0 6 6
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=2/3; ncol2=13; w=-2; offset=-2; strand=D; shift=0; score=0.658646; bmrAAAGGGGCkd ; cor=; Ncor= a 5 7 13 17 19 24 0 0 0 3 0 5 8 c 6 8 3 4 5 0 0 2 0 0 19 4 2 g 7 5 7 0 0 0 24 22 24 21 3 9 8 t 6 4 1 3 0 0 0 0 0 0 2 6 6
oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=3/3; ncol2=13; w=-1; offset=-1; strand=D; shift=1; score=0.609968; -tgAAAGGGGCtw ; cor=; Ncor= a 0 5 5 17 19 20 0 0 0 1 0 1 9 c 0 5 4 2 2 0 0 2 0 0 17 1 1 g 0 4 7 1 0 1 21 19 21 20 1 5 5 t 0 7 5 1 0 0 0 0 0 0 3 14 6

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=12; shift=1; ncol=13; -rgRAAAGGAGrd ; Alignment reference a 0 19 8 34 43 48 47 1 1 42 3 14 13 c 0 10 9 1 2 1 0 0 0 0 2 6 10 g 0 16 24 13 1 1 3 48 49 8 44 25 13 t 0 5 9 2 4 0 0 1 0 0 1 5 14
oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/5; ncol2=12; w=0; offset=0; strand=D; shift=1; score= 1; -rgRAAAGGAGrd ; cor=; Ncor= a 0 19 8 34 43 48 47 1 1 42 3 14 13 c 0 10 9 1 2 1 0 0 0 0 2 6 10 g 0 16 24 13 1 1 3 48 49 8 44 25 13 t 0 5 9 2 4 0 0 1 0 0 1 5 14
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=2/5; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.839753; krGrAAAGGAGGr ; cor=; Ncor= a 11 16 5 27 39 44 42 2 2 40 2 9 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 t 14 6 5 2 5 0 0 2 0 1 1 1 10
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=3/5; ncol2=14; w=-1; offset=-1; strand=D; shift=0; score=0.827098; wrGrAAAGGAGrd ; cor=; Ncor= a 11 12 1 21 31 29 34 0 1 27 2 18 9 c 6 4 3 2 2 1 0 1 0 2 0 2 4 g 6 12 29 10 0 4 0 33 33 4 31 13 12 t 11 6 1 1 1 0 0 0 0 1 1 1 9
oligos_6nt_mkv2_m4_shift1 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m4; m=4/5; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.683888; -bmrAAAGGGGCk ; cor=; Ncor= a 0 5 7 13 17 19 24 0 0 0 3 0 5 c 0 6 8 3 4 5 0 0 2 0 0 19 4 g 0 7 5 7 0 0 0 24 22 24 21 3 9 t 0 6 4 1 3 0 0 0 0 0 0 2 6
oligos_7nt_mkv2_m3_shift2 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m3; m=5/5; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.55945; --tgAAAGGGGCt ; cor=; Ncor= a 0 0 5 5 17 19 20 0 0 0 1 0 1 c 0 0 5 4 2 2 0 0 2 0 0 17 1 g 0 0 4 7 1 0 1 21 19 21 20 1 5 t 0 0 7 5 1 0 0 0 0 0 0 3 14

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=16; shift=0; ncol=16; htGCTGAsTCAGCadc ; Alignment reference a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 7 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 20 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 10 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13 11
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/3; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; htGCTGAsTCAGCadc ; cor=; Ncor= a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 7 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 20 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 10 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13 11
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=2/3; ncol2=13; w=0; offset=2; strand=D; shift=2; score=0.794519; --GcTGAGTCAGCmr- ; cor=; Ncor= a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 0 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 0 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 0 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11 0
oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m4; m=3/3; ncol2=11; w=0; offset=4; strand=D; shift=4; score=0.573574; ----tsAGTAAGCwm- ; cor=; Ncor= a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 0 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 0 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 0 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=11; shift=4; ncol=15; ----tsAGTAAGCwm ; Alignment reference a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11
oligos_7nt_mkv2_m4_shift4 (oligos_7nt_mkv2_m4)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=4; score= 1; ----tsAGTAAGCwm ; cor=; Ncor= a 0 0 0 0 8 2 58 1 2 48 62 1 0 17 21 c 0 0 0 0 16 22 3 6 2 14 0 2 63 14 20 g 0 0 0 0 5 25 1 57 8 2 0 60 1 16 13 t 0 0 0 0 36 16 3 1 53 1 3 2 1 18 11
oligos_6nt_mkv2_m1_shift2 (oligos_6nt_mkv2_m1)				; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=2/3; ncol2=13; w=-2; offset=-2; strand=D; shift=2; score=0.71807; --GcTGAGTCAGCmr ; cor=; Ncor= a 0 0 6 10 3 0 50 0 0 4 49 1 0 21 17 c 0 0 4 31 4 6 0 12 1 46 0 1 44 14 8 g 0 0 36 4 4 40 0 39 0 1 1 48 2 10 15 t 0 0 5 6 40 5 1 0 50 0 1 1 5 6 11
oligos_7nt_mkv2_m1_shift0 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m1; m=3/3; ncol2=16; w=-4; offset=-4; strand=D; shift=0; score=0.573574; htGCTGAsTCAGCad ; cor=; Ncor= a 13 6 2 8 1 0 48 0 0 6 48 0 1 28 13 c 12 11 1 39 0 3 0 17 0 42 0 0 46 8 8 g 10 11 42 0 1 34 0 31 0 0 0 41 0 9 14 t 13 20 3 1 46 11 0 0 48 0 0 7 1 3 13

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=14; shift=0; ncol=14; krGrAAAGGAGGrd ; Alignment reference a 11 16 5 27 39 44 42 2 2 40 2 9 13 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 12 t 14 6 5 2 5 0 0 2 0 1 1 1 10 13
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; krGrAAAGGAGGrd ; cor=; Ncor= a 11 16 5 27 39 44 42 2 2 40 2 9 13 13 c 8 7 3 2 1 2 0 0 1 0 1 2 8 8 g 13 17 33 15 1 0 4 42 43 5 42 34 15 12 t 14 6 5 2 5 0 0 2 0 1 1 1 10 13
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m5; m=2/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.959862; wrGrAAAGGAGrdm ; cor=; Ncor= a 11 12 1 21 31 29 34 0 1 27 2 18 9 10 c 6 4 3 2 2 1 0 1 0 2 0 2 4 11 g 6 12 29 10 0 4 0 33 33 4 31 13 12 7 t 11 6 1 1 1 0 0 0 0 1 1 1 9 6
oligos_6nt_mkv2_m2_shift1 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=3/3; ncol2=12; w=0; offset=1; strand=D; shift=1; score=0.839753; -rgRAAAGGAGrd- ; cor=; Ncor= a 0 19 8 34 43 48 47 1 1 42 3 14 13 0 c 0 10 9 1 2 1 0 0 0 0 2 6 10 0 g 0 16 24 13 1 1 3 48 49 8 44 25 13 0 t 0 5 9 2 4 0 0 1 0 0 1 5 14 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -tgAAAGGGGCtwr ; Alignment reference a 0 5 5 17 19 20 0 0 0 1 0 1 9 7 c 0 5 4 2 2 0 0 2 0 0 17 1 1 4 g 0 4 7 1 0 1 21 19 21 20 1 5 5 9 t 0 7 5 1 0 0 0 0 0 0 3 14 6 1
oligos_7nt_mkv2_m3_shift1 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/4; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -tgAAAGGGGCtwr ; cor=; Ncor= a 0 5 5 17 19 20 0 0 0 1 0 1 9 7 c 0 5 4 2 2 0 0 2 0 0 17 1 1 4 g 0 4 7 1 0 1 21 19 21 20 1 5 5 9 t 0 7 5 1 0 0 0 0 0 0 3 14 6 1
oligos_6nt_mkv2_m4_shift0 (oligos_6nt_mkv2_m4)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=2/4; ncol2=13; w=-1; offset=-1; strand=D; shift=0; score=0.814181; bmrAAAGGGGCkd- ; cor=; Ncor= a 5 7 13 17 19 24 0 0 0 3 0 5 8 0 c 6 8 3 4 5 0 0 2 0 0 19 4 2 0 g 7 5 7 0 0 0 24 22 24 21 3 9 8 0 t 6 4 1 3 0 0 0 0 0 0 2 6 6 0
oligos_6nt_mkv2_m3_shift2 (oligos_6nt_mkv2_m3)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=3/4; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.609968; --ktCAGGGGCrm- ; cor=; Ncor= a 0 0 5 9 1 38 0 0 1 2 2 15 14 0 c 0 0 8 7 37 0 2 4 1 3 36 7 13 0 g 0 0 15 4 0 0 35 34 34 31 0 10 5 0 t 0 0 10 18 0 0 1 0 2 2 0 6 6 0
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m2; m=4/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.55945; rgRAAAGGAGrd-- ; cor=; Ncor= a 19 8 34 43 48 47 1 1 42 3 14 13 0 0 c 10 9 1 2 1 0 0 0 0 2 6 10 0 0 g 16 24 13 1 1 3 48 49 8 44 25 13 0 0 t 5 9 2 4 0 0 1 0 0 1 5 14 0 0