RSAT - peak-motifs result

Analysis: 20vg_N11 (03/04/2025 12:33)

peak-motifs  -v 1 -title 20vg_N11 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tgagtcagc (sig=5.88; e-value=1.3e-06) RC: gctgactca oligos_6nt_mkv2_m2 assembly: aaaaggag (sig=5.30; e-value=5e-06) RC: ctcctttt oligos_6nt_mkv2_m3 assembly: caggggc (sig=2.16; e-value=0.0069) RC: gcccctg oligos_6nt_mkv2_m4 assembly: aaaaggggc (sig=2.16; e-value=0.0069) RC: gcccctttt oligos_6nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: gctgagtcagca (sig=9.27; e-value=5.4e-10) RC: tgctgactcagc oligos_7nt_mkv2_m2 assembly: gaaaaggagg (sig=5.85; e-value=1.4e-06) RC: cctccttttc oligos_7nt_mkv2_m3 assembly: aaaggggct (sig=1.85; e-value=0.014) RC: agccccttt oligos_7nt_mkv2_m4 assembly: agtaagc (sig=0.97; e-value=0.11) RC: gcttact oligos_7nt_mkv2_m5 assembly: gaaaaggaga (sig=5.85; e-value=1.4e-06) RC: tctccttttc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=5.88; evalue=1.3e-06 gcTGAGTCAGCmr YKGCTGACTCAGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (17.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624427-624527(.)) Mean nb of predicted sites per peak: 1.85	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=5.30; evalue=5e-06 rgAAAAGGAGrw WYCTCCTTTTCY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (15.33%) Max nb of predicted sites per peak: 3  (ChrII_A_nidulans_FGSC_A4:3411635-3411735(.)) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.16; evalue=0.0069 kwCAGGGGCam KTGCCCCTGWM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (11.33%) Max nb of predicted sites per peak: 2  (ChrVIII_A_nidulans_FGSC_A4:3628830-3628930(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=2.16; evalue=0.0069 kmrAAAGGGGCkd HMGCCCCTTTYKM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (12.67%) Max nb of predicted sites per peak: 2  (ChrVI_A_nidulans_FGSC_A4:2724970-2725070(.)) Mean nb of predicted sites per peak: 1.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv2_m1	k-mer sig=9.27; evalue=5.4e-10 wtGCTgAsTCAGCadc GHTGCTGASTCAGCAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (18.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624427-624527(.)) Mean nb of predicted sites per peak: 2.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m2	k-mer sig=5.85; evalue=1.4e-06 drgrAAAGGAGGrw WYCCTCCTTTYCYH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (12.67%) Max nb of predicted sites per peak: 5  (ChrII_A_nidulans_FGSC_A4:3411635-3411735(.)) Mean nb of predicted sites per peak: 1.63	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m3	k-mer sig=1.85; evalue=0.014 wdAAAGGGGCTwr YWAGCCCCTTTHW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (13.33%) Max nb of predicted sites per peak: 2  (ChrI_A_nidulans_FGSC_A4:2421284-2421384(.)) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m4	k-mer sig=0.97; evalue=0.11 tbAGTAAGCwm KWGCTTACTVA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (17.33%) Max nb of predicted sites per peak: 2  (ChrVIII_A_nidulans_FGSC_A4:895972-896072(.)) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m5	k-mer sig=5.85; evalue=1.4e-06 wrGrAAAGGAGrdm KHYCTCCTTTYCYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (13.33%) Max nb of predicted sites per peak: 3  (ChrII_A_nidulans_FGSC_A4:3411635-3411735(.)) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 20vg_N11 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.123236_2025-04-03.123236_7SuSOx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab