/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 6h_As_N1 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	150
	Sum of sequence lengths      	15000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	14850
 Oligonucleotide statistics:
	Total occurrences    	8608
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	14850
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	150	1500
	2	-2	[-39,-20]	-29.5	150	3000
	3	-1	[-19,0]	-9.5	150	3000
	4	0	[1,20]	10.5	150	3000
	5	1	[21,40]	30.5	150	3000
	6	2	[41,60]	50.5	150	1350

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
tt tt 555 25.4 5 1.2e-04 0.0019 2.72 1 83 120 111 83 121 37
aa aa 580 13.8 5 1.7e-02 0.27 0.56 2 82 99 121 105 117 56
tg tg 573 11.4 5 4.4e-02 0.71 0.15 3 74 133 109 95 112 50
ca ca 554 9.0 5 1.1e-01 1.8 -0.25 4 49 110 95 126 110 64
ct ct 616 7.1 5 2.2e-01 3.5 -0.54 5 69 138 127 101 121 60
at at 550 6.8 5 2.4e-01 3.8 -0.58 6 72 103 100 112 110 53
ac ac 395 5.4 5 3.6e-01 5.8 -0.77 7 40 83 69 70 93 40
gt gt 455 5.4 5 3.7e-01 6 -0.77 8 46 109 78 90 90 42
tc tc 537 5.3 5 3.8e-01 6.1 -0.79 9 57 112 93 104 111 60
ag ag 672 5.2 5 3.9e-01 6.3 -0.80 10 66 131 130 158 124 63
cc cc 565 5.1 5 4.1e-01 6.5 -0.81 11 54 108 114 101 130 58
gg gg 553 4.4 5 4.9e-01 7.9 -0.90 12 54 116 96 115 112 60
ga ga 551 3.5 5 6.2e-01 9.9 -0.99 13 67 104 107 106 113 54
cg cg 350 2.9 5 7.2e-01 11 -1.06 14 39 68 64 66 75 38
ta ta 520 2.9 5 7.2e-01 12 -1.06 15 62 99 106 99 110 44
gc gc 582 1.8 5 8.7e-01 14 -1.14 16 53 125 120 121 109 54 
 Host name	rsat
 Job started	2025-04-03.124237
 Job done	2025-04-03.124237
 Seconds	0.19
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