/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	42
		file1	2	10	60
		file1	3	11	70
		file1	4	10	22
		file1	5	12	18
		file1	6	16	53
		file1	7	16	44
		file1	8	11	56
		file1	9	12	20
		file1	10	11	41
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		42
		file2		2		10		60
		file2		3		11		70
		file2		4		10		22
		file2		5		12		18
		file2		6		16		53
		file2		7		16		44
		file2		8		11		56
		file2		9		12		20
		file2		10		11		41
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 0.995 0.995 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 0.995 0.995 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.974 0.974 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.974 0.974 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.990 0.866 14 16 14 16 0.8750 1.0000 0.8750 D -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.990 0.866 16 14 14 16 0.8750 0.8750 1.0000 D 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.989 0.865 14 16 14 16 0.8750 1.0000 0.8750 D -1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.989 0.865 16 14 14 16 0.8750 0.8750 1.0000 D 1
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 0.908 0.757 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 0.908 0.757 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 0.732 0.732 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m5 0.732 0.732 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 0.899 0.706 11 14 11 14 0.7857 1.0000 0.7857 R -3
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m5 0.899 0.706 14 11 11 14 0.7857 0.7857 1.0000 R 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 0.838 0.659 14 11 11 14 0.7857 0.7857 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 0.838 0.659 11 14 11 14 0.7857 1.0000 0.7857 D 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.802 0.630 14 11 11 14 0.7857 0.7857 1.0000 R 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.802 0.630 11 14 11 14 0.7857 1.0000 0.7857 R -3
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 0.908 0.624 11 16 11 16 0.6875 1.0000 0.6875 R -4
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m5 0.908 0.624 16 11 11 16 0.6875 0.6875 1.0000 R 1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 0.880 0.605 16 11 11 16 0.6875 0.6875 1.0000 D 5
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m2 0.880 0.605 11 16 11 16 0.6875 1.0000 0.6875 D -5
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.862 0.593 16 11 11 16 0.6875 0.6875 1.0000 D 1
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.862 0.593 11 16 11 16 0.6875 1.0000 0.6875 D -1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 0.830 0.570 11 16 11 16 0.6875 1.0000 0.6875 R -4
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 0.830 0.570 16 11 11 16 0.6875 0.6875 1.0000 R 1
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 0.817 0.562 16 11 11 16 0.6875 0.6875 1.0000 D 1
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 0.817 0.562 11 16 11 16 0.6875 1.0000 0.6875 D -1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 0.779 0.536 16 11 11 16 0.6875 0.6875 1.0000 R 1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 0.779 0.536 11 16 11 16 0.6875 1.0000 0.6875 R -4
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 0.765 0.471 10 11 8 13 0.6154 0.8000 0.7273 R -3
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 0.765 0.471 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 0.741 0.456 11 10 8 13 0.6154 0.7273 0.8000 D 3
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 0.741 0.456 10 11 8 13 0.6154 0.8000 0.7273 D -3 
 Host name	rsat
 Job started	2025-04-03.124250
 Job done	2025-04-03.124259
 Seconds	0.35
	user	0.35
	system	0.27
	cuser	6.79
;	csystem	1.11