RSAT - peak-motifs result

Analysis: 6h_As_N1 (03/04/2025 12:43)

peak-motifs  -v 1 -title 6h_As_N1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: gctgactcag (sig=4.81; e-value=1.5e-05) RC: ctgagtcagc oligos_6nt_mkv2_m2 assembly: cgtacg (sig=1.99; e-value=0.01) RC: cgtacg oligos_6nt_mkv2_m3 assembly: gcttact (sig=0.94; e-value=0.11) RC: agtaagc oligos_6nt_mkv2_m4 assembly: tactaa (sig=0.71; e-value=0.19) RC: ttagta oligos_6nt_mkv2_m5 assembly: gcacgtgc (sig=0.52; e-value=0.3) RC: gcacgtgc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: tgctgactcagc (sig=9.65; e-value=2.2e-10) RC: gctgagtcagca oligos_7nt_mkv2_m2 assembly: tgctgactcatc (sig=9.65; e-value=2.2e-10) RC: gatgagtcagca oligos_7nt_mkv2_m3 assembly: agtaagc (sig=2.91; e-value=0.0012) RC: gcttact oligos_7nt_mkv2_m4 assembly: tcgtacga (sig=2.44; e-value=0.0036) RC: tcgtacga oligos_7nt_mkv2_m5 assembly: agtcatc (sig=1.32; e-value=0.048) RC: gatgact	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=4.81; evalue=1.5e-05 wtGMTGASTCAGCa TGCTGASTCAKCAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 28 (18.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624434-624534(.)) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=1.99; evalue=0.01 ywCGTACGwr YWCGTACGWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (12.00%) Max nb of predicted sites per peak: 4  (ChrV_A_nidulans_FGSC_A4:1135871-1135971(.)) Mean nb of predicted sites per peak: 2.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=0.94; evalue=0.11 tyGCTTACTma TKAGTAAGCRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 28 (18.67%) Max nb of predicted sites per peak: 2  (ChrIV_A_nidulans_FGSC_A4:624434-624534(.)) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.71; evalue=0.19 ywTACTAAwy RWTTAGTAWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (14.67%) Max nb of predicted sites per peak: 1  (ChrV_A_nidulans_FGSC_A4:3365031-3365131(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.52; evalue=0.3 mkGCACGTGCmk MKGCACGTGCMK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (10.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:1135871-1135971(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=9.65; evalue=2.2e-10 sttGmTGASTCAGCma TKGCTGASTCAKCAAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 35 (23.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624434-624534(.)) Mean nb of predicted sites per peak: 1.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=9.65; evalue=2.2e-10 gytGCTGASTCAkCmm KKGMTGASTCAGCARC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (18.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624434-624534(.)) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=2.91; evalue=0.0012 tkAGTAAGCda THGCTTACTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (15.33%) Max nb of predicted sites per peak: 2  (ChrIV_A_nidulans_FGSC_A4:624434-624534(.)) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.44; evalue=0.0036 gckCGTACGmgc GCKCGTACGMGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (5.33%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3118787-3118887(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.32; evalue=0.048 tkAGTCATCaw WTGATGACTMA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (20.00%) Max nb of predicted sites per peak: 3  (ChrIV_A_nidulans_FGSC_A4:624434-624534(.)) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 6h_As_N1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124233_2025-04-03.124233_lUir6h/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab