peak-motifs 6h_As

Sequence composition (test sequences)

Nb of peaks: 150
Total seq. size: 15 kb
Min length: 100 bp
Mean length: 100 bp
Max length: 100 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=7.74; evalue=1.8e-08

kytGCTGAsTCAGCary

RYTGCTGASTCAGCARM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 41 (27.33%)
Max nb of predicted sites per peak: 4
(ChrIV_A_nidulans_FGSC_A4:624404-624504(.))
Mean nb of predicted sites per peak: 2.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv2_m2

k-mer sig=5.43; evalue=3.7e-06

mwsCACGTGcyk

MRGCACGTGSWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 19 (12.67%)
Max nb of predicted sites per peak: 4
(ChrV_A_nidulans_FGSC_A4:3075530-3075630(.))
Mean nb of predicted sites per peak: 1.79

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv2_m3

k-mer sig=2.40; evalue=0.004

mtwGCTTACTAAd

HTTAGTAAGCWAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (20.00%)
Max nb of predicted sites per peak: 2
(ChrV_A_nidulans_FGSC_A4:3331022-3331122(.))
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv2_m4

k-mer sig=7.05; evalue=8.9e-08

GcTkAGTCAGCAwy

RWTGCTGACTMAGC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (30.67%)
Max nb of predicted sites per peak: 3
(ChrV_A_nidulans_FGSC_A4:3331022-3331122(.))
Mean nb of predicted sites per peak: 1.83

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv2_m5

k-mer sig=0.23; evalue=0.59

mkGATGACka

TMGTCATCMK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 18 (12.00%)
Max nb of predicted sites per peak: 1
(ChrV_A_nidulans_FGSC_A4:925797-925897(.))
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv2_m1

k-mer sig=16.98; evalue=1e-17

rytGCTGAsTCAGCar

YTGCTGASTCAGCARY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 42 (28.00%)
Max nb of predicted sites per peak: 4
(ChrIV_A_nidulans_FGSC_A4:624404-624504(.))
Mean nb of predicted sites per peak: 2.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv2_m2

k-mer sig=4.93; evalue=1.2e-05

raaTGmTGASTmAGCra

TYGCTKASTCAKCATTY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 43 (28.67%)
Max nb of predicted sites per peak: 4
(ChrIV_A_nidulans_FGSC_A4:624404-624504(.))
Mean nb of predicted sites per peak: 1.84

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv2_m3

k-mer sig=4.11; evalue=7.8e-05

rmTtAGTAAkCAmt

AKTGMTTACTAAKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 50 (33.33%)
Max nb of predicted sites per peak: 3
(ChrV_A_nidulans_FGSC_A4:3331022-3331122(.))
Mean nb of predicted sites per peak: 1.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv2_m4

k-mer sig=1.40; evalue=0.04

mgGCACGTGCmk

MKGCACGTGCCK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (6.67%)
Max nb of predicted sites per peak: 2
(ChrVIII_A_nidulans_FGSC_A4:4097888-4097988(.))
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv2_m5

k-mer sig=1.38; evalue=0.042

amCTATCTAda

THTAGATAGKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (9.33%)
Max nb of predicted sites per peak: 2
(ChrV_A_nidulans_FGSC_A4:3366687-3366787(.))
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: 6h_As_N2 (03/04/2025 12:43)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results