position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 6h_As_N2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 150 Sum of sequence lengths 15000 Min sequence length 0 Max sequence length 100 Average sequence length 100 Possible positions 15000 Oligonucleotide statistics: Total occurrences 10215 Position interval parameters: Position interval 20 Number of windows 6 Total positions 15000 Degrees of freedom 5 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -3 [-59,-40] -49.5 150 1500 2 -2 [-39,-20] -29.5 150 3000 3 -1 [-19,0] -9.5 150 3000 4 0 [1,20] 10.5 150 3000 5 1 [21,40] 30.5 150 3000 6 2 [41,60] 50.5 150 1500 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -49.5 occurrences in window 1 [-59,-40] 11 -29.5 occurrences in window 2 [-39,-20] 12 -9.5 occurrences in window 3 [-19,0] 13 10.5 occurrences in window 4 [1,20] 14 30.5 occurrences in window 5 [21,40] 15 50.5 occurrences in window 6 [41,60]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 2617 | 10.8 | 5 | 5.5e-02 | 0.22 | 0.66 | 1 | 306 | 508 | 519 | 493 | 514 | 277 |
| t | t | 2580 | 7.0 | 5 | 2.2e-01 | 0.89 | 0.05 | 2 | 283 | 511 | 494 | 484 | 535 | 273 |
| a | a | 2494 | 5.8 | 5 | 3.2e-01 | 1.3 | -0.11 | 3 | 258 | 512 | 474 | 486 | 486 | 278 |
| c | c | 2524 | 5.6 | 5 | 3.5e-01 | 1.4 | -0.14 | 4 | 275 | 515 | 465 | 500 | 514 | 255 |
Host name rsat Job started 2025-04-03.124302 Job done 2025-04-03.124302 Seconds 0.17 user 0.17 system 0.02 cuser 0 ; csystem 0