/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 6h_As_N2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	150
	Sum of sequence lengths      	15000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	14850
 Oligonucleotide statistics:
	Total occurrences    	10080
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	14850
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	150	1500
	2	-2	[-39,-20]	-29.5	150	3000
	3	-1	[-19,0]	-9.5	150	3000
	4	0	[1,20]	10.5	150	3000
	5	1	[21,40]	30.5	150	3000
	6	2	[41,60]	50.5	150	1350

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
gg gg 718 19.6 5 1.5e-03 0.023 1.63 1 103 137 139 119 145 75
tt tt 622 18.3 5 2.6e-03 0.042 1.38 2 64 136 98 111 160 53
at at 635 13.3 5 2.1e-02 0.33 0.48 3 84 126 129 116 109 71
ac ac 471 10.2 5 7.1e-02 1.1 -0.05 4 45 103 77 92 117 37
gt gt 548 8.5 5 1.3e-01 2.1 -0.31 5 58 92 98 117 123 60
cg cg 417 7.9 5 1.6e-01 2.6 -0.42 6 54 85 70 77 95 36
tg tg 689 7.8 5 1.7e-01 2.6 -0.42 7 81 128 156 119 143 62
cc cc 644 7.3 5 2.0e-01 3.1 -0.50 8 73 141 104 131 135 60
aa aa 585 6.0 5 3.0e-01 4.9 -0.69 9 54 128 109 105 125 64
ag ag 765 5.8 5 3.2e-01 5.2 -0.71 10 71 153 157 173 135 76
ca ca 688 5.4 5 3.7e-01 6 -0.78 11 70 135 120 152 139 72
tc tc 660 5.3 5 3.7e-01 6 -0.78 12 77 125 127 134 125 72
ga ga 603 5.3 5 3.8e-01 6 -0.78 13 71 123 135 108 114 52
ct ct 744 4.0 5 5.6e-01 8.9 -0.95 14 75 152 170 139 145 63
ta ta 581 2.8 5 7.3e-01 12 -1.07 15 59 120 113 120 107 62
gc gc 710 2.4 5 8.0e-01 13 -1.11 16 74 152 146 148 132 58 
 Host name	rsat
 Job started	2025-04-03.124303
 Job done	2025-04-03.124303
 Seconds	0.17
	user	0.18
	system	0.02
	cuser	0.01
;	csystem	0