/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	17	67
		file1	2	12	45
		file1	3	13	33
		file1	4	14	74
		file1	5	10	24
		file1	6	16	67
		file1	7	17	46
		file1	8	14	53
		file1	9	12	20
		file1	10	11	50
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		17		67
		file2		2		12		45
		file2		3		13		33
		file2		4		14		74
		file2		5		10		24
		file2		6		16		67
		file2		7		17		46
		file2		8		14		53
		file2		9		12		20
		file2		10		11		50
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 oligos_7nt_mkv2_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 oligos_6nt_mkv2_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 oligos_7nt_mkv2_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m2 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m3 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 0.946 0.946 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 oligos_6nt_mkv2_m2 oligos_7nt_mkv2_m4 0.946 0.946 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 0.997 0.939 16 17 16 17 0.9412 1.0000 0.9412 R 0
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m1 0.997 0.939 17 16 16 17 0.9412 0.9412 1.0000 R 1
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 0.947 0.892 17 16 16 17 0.9412 0.9412 1.0000 D 1
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m2 0.947 0.892 16 17 16 17 0.9412 1.0000 0.9412 D -1
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 0.884 0.884 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m3 0.884 0.884 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 0.945 0.877 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m3 0.945 0.877 14 13 13 14 0.9286 0.9286 1.0000 R 1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 0.942 0.837 17 17 16 18 0.8889 0.9412 0.9412 R 1
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m2 0.942 0.837 17 17 16 18 0.8889 0.9412 0.9412 R 1
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 0.953 0.834 14 16 14 16 0.8750 1.0000 0.8750 R -2
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m4 0.953 0.834 16 14 14 16 0.8750 0.8750 1.0000 R 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 0.956 0.788 17 14 14 17 0.8235 0.8235 1.0000 D 3
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m1 0.956 0.788 14 17 14 17 0.8235 1.0000 0.8235 D -3
oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 0.937 0.772 14 17 14 17 0.8235 1.0000 0.8235 R -2
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m4 0.937 0.772 17 14 14 17 0.8235 0.8235 1.0000 R 1
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 0.818 0.760 14 13 13 14 0.9286 0.9286 1.0000 R 1
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m4 0.818 0.760 13 14 13 14 0.9286 1.0000 0.9286 R 0
oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 0.806 0.705 16 14 14 16 0.8750 0.8750 1.0000 R 0
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m1 0.806 0.705 14 16 14 16 0.8750 1.0000 0.8750 R -2
oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 0.856 0.705 17 14 14 17 0.8235 0.8235 1.0000 R 1
oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_7nt_mkv2_m3 oligos_7nt_mkv2_m2 0.856 0.705 14 17 14 17 0.8235 1.0000 0.8235 R -2
oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 0.819 0.674 17 14 14 17 0.8235 0.8235 1.0000 D 3
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m1 0.819 0.674 14 17 14 17 0.8235 1.0000 0.8235 D -3
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 0.724 0.588 16 13 13 16 0.8125 0.8125 1.0000 D 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m1 0.724 0.588 13 16 13 16 0.8125 1.0000 0.8125 D 0
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 0.742 0.568 17 13 13 17 0.7647 0.7647 1.0000 R 4
oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m3 oligos_6nt_mkv2_m1 0.742 0.568 13 17 13 17 0.7647 1.0000 0.7647 R 0
oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 0.732 0.559 13 17 13 17 0.7647 1.0000 0.7647 D -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m3 0.732 0.559 17 13 13 17 0.7647 0.7647 1.0000 D 1
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 0.778 0.556 10 14 10 14 0.7143 1.0000 0.7143 R -1
oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m4 oligos_6nt_mkv2_m5 0.778 0.556 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 0.725 0.518 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m3 0.725 0.518 10 14 10 14 0.7143 1.0000 0.7143 R -1
oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 0.880 0.518 17 10 10 17 0.5882 0.5882 1.0000 D 2
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m2 0.880 0.518 10 17 10 17 0.5882 1.0000 0.5882 D -2
oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 0.743 0.464 16 10 10 16 0.6250 0.6250 1.0000 D 1
oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_7nt_mkv2_m1 0.743 0.464 10 16 10 16 0.6250 1.0000 0.6250 D -1
oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 0.731 0.430 10 17 10 17 0.5882 1.0000 0.5882 R -1
oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 oligos_6nt_mkv2_m1 oligos_6nt_mkv2_m5 0.731 0.430 17 10 10 17 0.5882 0.5882 1.0000 R 6 
 Host name	rsat
 Job started	2025-04-03.124317
 Job done	2025-04-03.124326
 Seconds	0.33
	user	0.33
	system	0.3
	cuser	7.69
;	csystem	1.15