One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124259_2025-04-03.124259_jkPG2v/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5; m=0 (reference); ncol1=11; shift=0; ncol=11; amCTATCTAda ; Alignment reference a 25 18 1 0 44 1 2 0 44 16 23 c 5 15 44 3 3 2 43 1 0 8 10 g 9 5 2 0 2 2 4 1 2 13 11 t 11 12 3 47 1 45 1 48 4 13 6

oligos_7nt_mkv2_m5_shift0 (oligos_7nt_mkv2_m5)
; oligos_7nt_mkv2_m5 versus oligos_7nt_mkv2_m5; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; amCTATCTAda ; cor=; Ncor= a 25 18 1 0 44 1 2 0 44 16 23 c 5 15 44 3 3 2 43 1 0 8 10 g 9 5 2 0 2 2 4 1 2 13 11 t 11 12 3 47 1 45 1 48 4 13 6

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m3_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=14; shift=3; ncol=17; ---rmTtAGTAAkCAmt ; Alignment reference a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22

oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score= 1; ---rmTtAGTAAkCAmt ; cor=; Ncor= a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22

oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=2/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.884174; ---GcTkAGTCAGCAwy ; cor=; Ncor= a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19

oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m3_rc; m=3/7; ncol2=13; w=0; offset=1; strand=R; shift=4; score=0.877272; ----hTTAGTAAGCwak ; cor=; Ncor= a 0 0 0 0 12 4 1 28 2 0 32 31 1 1 16 15 6 c 0 0 0 0 10 5 0 3 3 0 1 1 0 31 4 5 4 g 0 0 0 0 1 1 7 2 28 1 0 0 31 0 4 8 13 t 0 0 0 0 10 23 25 0 0 32 0 1 1 1 9 5 10

oligos_7nt_mkv2_m1_rc_shift1 (oligos_7nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m1_rc; m=4/7; ncol2=16; w=-2; offset=-2; strand=R; shift=1; score=0.705478; -ytGCTGAsTCAGCary ; cor=; Ncor= a 0 9 11 0 11 0 0 66 0 0 7 67 0 0 36 18 12 c 0 20 13 0 55 0 1 1 27 0 60 0 1 67 11 14 21 g 0 15 11 66 1 0 53 0 40 0 0 0 52 0 9 20 14 t 0 23 32 1 0 67 13 0 0 67 0 0 14 0 11 15 20

oligos_7nt_mkv2_m2_rc_shift1 (oligos_7nt_mkv2_m2_rc)
; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=17; w=-2; offset=-2; strand=R; shift=1; score=0.705085; -tyGCTkASTCAkCAtt ; cor=; Ncor= a 0 8 9 0 5 1 1 46 0 0 6 44 2 0 33 11 8 c 0 11 12 0 38 0 1 0 14 0 40 1 0 44 5 11 7 g 0 7 6 44 1 1 19 0 32 0 0 0 19 0 4 10 9 t 0 20 19 2 2 44 25 0 0 46 0 1 25 2 4 14 22

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m1; m=6/7; ncol2=17; w=-3; offset=-3; strand=D; shift=0; score=0.674394; kytGCTGAsTCAGCary ; cor=; Ncor= a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18

oligos_6nt_mkv2_m5_rc_shift6 (oligos_6nt_mkv2_m5_rc)
; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m5_rc; m=7/7; ncol2=10; w=0; offset=3; strand=R; shift=6; score=0.517824; ------tmGTCATCmk- ; cor=; Ncor= a 0 0 0 0 0 0 5 15 0 1 3 23 0 0 11 4 0 c 0 0 0 0 0 0 5 7 0 0 21 0 1 24 8 5 0 g 0 0 0 0 0 0 3 1 24 0 0 0 0 0 2 7 0 t 0 0 0 0 0 0 11 1 0 23 0 1 23 0 3 8 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m4_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; mkGCACGTGCmk ; Alignment reference a 8 3 1 0 17 0 0 1 0 2 5 3 c 6 4 2 20 2 20 0 0 0 15 8 3 g 3 8 15 0 0 0 20 2 20 2 4 6 t 3 5 2 0 1 0 0 17 0 1 3 8

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_7nt_mkv2_m4 versus oligos_7nt_mkv2_m4; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; mkGCACGTGCmk ; cor=; Ncor= a 8 3 1 0 17 0 0 1 0 2 5 3 c 6 4 2 20 2 20 0 0 0 15 8 3 g 3 8 15 0 0 0 20 2 20 2 4 6 t 3 5 2 0 1 0 0 17 0 1 3 8

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_7nt_mkv2_m4 versus oligos_6nt_mkv2_m2; m=2/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.946133; mwsCACGTGcyk ; cor=; Ncor= a 12 12 8 0 41 0 0 2 1 8 9 4 c 21 9 12 39 2 45 0 0 0 22 13 8 g 8 11 17 4 0 0 45 2 44 10 9 21 t 4 13 8 2 2 0 0 41 0 5 14 12

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m2_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=17; shift=0; ncol=17; raaTGmTGASTmAGCra ; Alignment reference a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 2 19 20 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 44 6 7 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 0 12 11 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5 0 9 8

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/7; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; raaTGmTGASTmAGCra ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 2 19 20 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 44 6 7 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 0 12 11 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5 0 9 8

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=2/7; ncol2=16; w=0; offset=1; strand=D; shift=1; score= 0.8917; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 1 32 23 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 66 11 15 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 0 13 20 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11 0 11 9

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m1_rc; m=3/7; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.837277; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 67 0 1 38 19 c 0 14 20 6 0 54 0 0 0 39 0 53 0 1 66 9 16 g 0 20 12 11 67 0 0 57 0 28 1 0 0 54 0 10 19 t 0 15 21 39 0 0 67 10 0 0 66 0 0 12 0 10 13

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m4_rc; m=4/7; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.771609; -rwTGCTGACTmAgC-- ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 58 8 5 0 0 c 0 17 18 6 0 63 1 0 0 60 0 34 3 5 52 0 0 g 0 20 11 5 68 0 0 60 0 10 0 5 9 45 3 0 0 t 0 18 23 53 6 0 73 14 1 3 73 9 4 16 14 0 0

oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)
; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m3_rc; m=5/7; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.705085; -akTGmTTACTaAky-- ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 49 11 6 0 0 c 0 12 10 3 0 35 0 0 1 43 6 12 1 0 29 0 0 g 0 8 15 2 48 1 0 10 1 8 2 1 3 26 4 0 0 t 0 11 19 42 5 1 53 43 1 2 44 4 0 16 14 0 0

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m3; m=6/7; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.559433; -mtwGCTTACTAAd--- ; cor=; Ncor= a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 0 0 0 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 0 0 0 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 0 0 0 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12 0 0 0

oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)
; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m5; m=7/7; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.517817; --mkGATGACka----- ; cor=; Ncor= a 0 0 8 3 0 23 1 0 23 0 1 11 0 0 0 0 0 c 0 0 7 2 0 0 0 0 0 24 1 3 0 0 0 0 0 g 0 0 5 8 24 1 0 21 0 0 7 5 0 0 0 0 0 t 0 0 4 11 0 0 23 3 1 0 15 5 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m1_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=17; shift=0; ncol=17; kytGCTGAsTCAGCary ; Alignment reference a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/7; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; kytGCTGAsTCAGCary ; cor=; Ncor= a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18

oligos_7nt_mkv2_m1_rc_shift1 (oligos_7nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1_rc; m=2/7; ncol2=16; w=0; offset=1; strand=R; shift=1; score=0.938706; -ytGCTGAsTCAGCary ; cor=; Ncor= a 0 9 11 0 11 0 0 66 0 0 7 67 0 0 36 18 12 c 0 20 13 0 55 0 1 1 27 0 60 0 1 67 11 14 21 g 0 15 11 66 1 0 53 0 40 0 0 0 52 0 9 20 14 t 0 23 32 1 0 67 13 0 0 67 0 0 14 0 11 15 20

oligos_7nt_mkv2_m2_rc_shift1 (oligos_7nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m2_rc; m=3/7; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.837277; -tyGCTkASTCAkCAtt ; cor=; Ncor= a 0 8 9 0 5 1 1 46 0 0 6 44 2 0 33 11 8 c 0 11 12 0 38 0 1 0 14 0 40 1 0 44 5 11 7 g 0 7 6 44 1 1 19 0 32 0 0 0 19 0 4 10 9 t 0 20 19 2 2 44 25 0 0 46 0 1 25 2 4 14 22

oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m4; m=4/7; ncol2=14; w=0; offset=3; strand=D; shift=3; score=0.787646; ---GcTkAGTCAGCAwy ; cor=; Ncor= a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19

oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m3; m=5/7; ncol2=14; w=0; offset=3; strand=D; shift=3; score=0.674394; ---rmTtAGTAAkCAmt ; cor=; Ncor= a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22

oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m3_rc; m=6/7; ncol2=13; w=0; offset=4; strand=R; shift=4; score=0.567533; ----hTTAGTAAGCwak ; cor=; Ncor= a 0 0 0 0 12 4 1 28 2 0 32 31 1 1 16 15 6 c 0 0 0 0 10 5 0 3 3 0 1 1 0 31 4 5 4 g 0 0 0 0 1 1 7 2 28 1 0 0 31 0 4 8 13 t 0 0 0 0 10 23 25 0 0 32 0 1 1 1 9 5 10

oligos_6nt_mkv2_m5_rc_shift6 (oligos_6nt_mkv2_m5_rc)
; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m5_rc; m=7/7; ncol2=10; w=0; offset=6; strand=R; shift=6; score=0.429908; ------tmGTCATCmk- ; cor=; Ncor= a 0 0 0 0 0 0 5 15 0 1 3 23 0 0 11 4 0 c 0 0 0 0 0 0 5 7 0 0 21 0 1 24 8 5 0 g 0 0 0 0 0 0 3 1 24 0 0 0 0 0 2 7 0 t 0 0 0 0 0 0 11 1 0 23 0 1 23 0 3 8 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m4_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=14; shift=3; ncol=17; ---GcTkAGTCAGCAwy ; Alignment reference a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19

oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score= 1; ---GcTkAGTCAGCAwy ; cor=; Ncor= a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19

oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=2/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.884174; ---rmTtAGTAAkCAmt ; cor=; Ncor= a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22

oligos_7nt_mkv2_m1_rc_shift1 (oligos_7nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m1_rc; m=3/7; ncol2=16; w=-2; offset=-2; strand=R; shift=1; score=0.834212; -ytGCTGAsTCAGCary ; cor=; Ncor= a 0 9 11 0 11 0 0 66 0 0 7 67 0 0 36 18 12 c 0 20 13 0 55 0 1 1 27 0 60 0 1 67 11 14 21 g 0 15 11 66 1 0 53 0 40 0 0 0 52 0 9 20 14 t 0 23 32 1 0 67 13 0 0 67 0 0 14 0 11 15 20

oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=4/7; ncol2=17; w=-3; offset=-3; strand=D; shift=0; score=0.787646; kytGCTGAsTCAGCary ; cor=; Ncor= a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18

oligos_7nt_mkv2_m2_rc_shift1 (oligos_7nt_mkv2_m2_rc)
; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=17; w=-2; offset=-2; strand=R; shift=1; score=0.771609; -tyGCTkASTCAkCAtt ; cor=; Ncor= a 0 8 9 0 5 1 1 46 0 0 6 44 2 0 33 11 8 c 0 11 12 0 38 0 1 0 14 0 40 1 0 44 5 11 7 g 0 7 6 44 1 1 19 0 32 0 0 0 19 0 4 10 9 t 0 20 19 2 2 44 25 0 0 46 0 1 25 2 4 14 22

oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m3_rc; m=6/7; ncol2=13; w=0; offset=1; strand=R; shift=4; score=0.759915; ----hTTAGTAAGCwak ; cor=; Ncor= a 0 0 0 0 12 4 1 28 2 0 32 31 1 1 16 15 6 c 0 0 0 0 10 5 0 3 3 0 1 1 0 31 4 5 4 g 0 0 0 0 1 1 7 2 28 1 0 0 31 0 4 8 13 t 0 0 0 0 10 23 25 0 0 32 0 1 1 1 9 5 10

oligos_6nt_mkv2_m5_rc_shift6 (oligos_6nt_mkv2_m5_rc)
; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m5_rc; m=7/7; ncol2=10; w=0; offset=3; strand=R; shift=6; score=0.555689; ------tmGTCATCmk- ; cor=; Ncor= a 0 0 0 0 0 0 5 15 0 1 3 23 0 0 11 4 0 c 0 0 0 0 0 0 5 7 0 0 21 0 1 24 8 5 0 g 0 0 0 0 0 0 3 1 24 0 0 0 0 0 2 7 0 t 0 0 0 0 0 0 11 1 0 23 0 1 23 0 3 8 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift1 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -mtwGCTTACTAAd ; Alignment reference a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/6; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -mtwGCTTACTAAd ; cor=; Ncor= a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12

oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m3_rc; m=2/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.877272; -akTGmTTACTaAk ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 49 11 c 0 12 10 3 0 35 0 0 1 43 6 12 1 0 g 0 8 15 2 48 1 0 10 1 8 2 1 3 26 t 0 11 19 42 5 1 53 43 1 2 44 4 0 16

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m4_rc; m=3/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.759915; -rwTGCTGACTmAg ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 58 8 c 0 17 18 6 0 63 1 0 0 60 0 34 3 5 g 0 20 11 5 68 0 0 60 0 10 0 5 9 45 t 0 18 23 53 6 0 73 14 1 3 73 9 4 16

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m1; m=4/6; ncol2=16; w=0; offset=0; strand=D; shift=1; score=0.588435; -rytGCTGAsTCAG ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m1_rc; m=5/6; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.567533; -rytGCTGAsTCAG ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 67 0 c 0 14 20 6 0 54 0 0 0 39 0 53 0 1 g 0 20 12 11 67 0 0 57 0 28 1 0 0 54 t 0 15 21 39 0 0 67 10 0 0 66 0 0 12

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m2; m=6/6; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.559433; raaTGmTGASTmAG ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m5_shift2 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=10; shift=2; ncol=12; --mkGATGACka ; Alignment reference a 0 0 8 3 0 23 1 0 23 0 1 11 c 0 0 7 2 0 0 0 0 0 24 1 3 g 0 0 5 8 24 1 0 21 0 0 7 5 t 0 0 4 11 0 0 23 3 1 0 15 5

oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)
; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m5; m=1/6; ncol2=10; w=0; offset=0; strand=D; shift=2; score= 1; --mkGATGACka ; cor=; Ncor= a 0 0 8 3 0 23 1 0 23 0 1 11 c 0 0 7 2 0 0 0 0 0 24 1 3 g 0 0 5 8 24 1 0 21 0 0 7 5 t 0 0 4 11 0 0 23 3 1 0 15 5

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m4_rc; m=2/6; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score=0.555689; -rwTGCTGACTm ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 c 0 17 18 6 0 63 1 0 0 60 0 34 g 0 20 11 5 68 0 0 60 0 10 0 5 t 0 18 23 53 6 0 73 14 1 3 73 9

oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)
; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m3_rc; m=3/6; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score=0.517824; -akTGmTTACTa ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 c 0 12 10 3 0 35 0 0 1 43 6 12 g 0 8 15 2 48 1 0 10 1 8 2 1 t 0 11 19 42 5 1 53 43 1 2 44 4

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m2; m=4/6; ncol2=17; w=-2; offset=-2; strand=D; shift=0; score=0.517817; raaTGmTGASTm ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 c 9 9 10 4 0 19 0 0 0 32 0 19 g 14 7 11 5 44 0 1 40 0 14 0 1 t 11 8 11 33 0 2 44 6 0 0 46 1

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=5/6; ncol2=16; w=-1; offset=-1; strand=D; shift=1; score=0.464233; -rytGCTGAsTC ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 c 0 14 20 9 0 52 0 0 0 40 0 53 g 0 21 14 11 67 1 0 60 0 27 1 1 t 0 12 18 36 0 0 67 7 0 0 66 0

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m1_rc; m=6/6; ncol2=17; w=-1; offset=-1; strand=R; shift=1; score=0.429908; -rytGCTGAsTC ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 c 0 14 20 6 0 54 0 0 0 39 0 53 g 0 20 12 11 67 0 0 57 0 28 1 0 t 0 15 21 39 0 0 67 10 0 0 66 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; mwsCACGTGcyk ; Alignment reference a 12 12 8 0 41 0 0 2 1 8 9 4 c 21 9 12 39 2 45 0 0 0 22 13 8 g 8 11 17 4 0 0 45 2 44 10 9 21 t 4 13 8 2 2 0 0 41 0 5 14 12

oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2)
; oligos_6nt_mkv2_m2 versus oligos_6nt_mkv2_m2; m=1/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; mwsCACGTGcyk ; cor=; Ncor= a 12 12 8 0 41 0 0 2 1 8 9 4 c 21 9 12 39 2 45 0 0 0 22 13 8 g 8 11 17 4 0 0 45 2 44 10 9 21 t 4 13 8 2 2 0 0 41 0 5 14 12

oligos_7nt_mkv2_m4_shift0 (oligos_7nt_mkv2_m4)
; oligos_6nt_mkv2_m2 versus oligos_7nt_mkv2_m4; m=2/2; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.946133; mkGCACGTGCmk ; cor=; Ncor= a 8 3 1 0 17 0 0 1 0 2 5 3 c 6 4 2 20 2 20 0 0 0 15 8 3 g 3 8 15 0 0 0 20 2 20 2 4 6 t 3 5 2 0 1 0 0 17 0 1 3 8

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv2_m1_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=16; shift=1; ncol=17; -rytGCTGAsTCAGCar ; Alignment reference a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 1 32 23 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 66 11 15 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 0 13 20 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11 0 11 9

oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/7; ncol2=16; w=0; offset=0; strand=D; shift=1; score= 1; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 1 32 23 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 66 11 15 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 0 13 20 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11 0 11 9

oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1_rc; m=2/7; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.938706; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 67 0 1 38 19 c 0 14 20 6 0 54 0 0 0 39 0 53 0 1 66 9 16 g 0 20 12 11 67 0 0 57 0 28 1 0 0 54 0 10 19 t 0 15 21 39 0 0 67 10 0 0 66 0 0 12 0 10 13

oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m2; m=3/7; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score= 0.8917; raaTGmTGASTmAGCra ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 2 19 20 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 44 6 7 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 0 12 11 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5 0 9 8

oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m4_rc; m=4/7; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.834212; -rwTGCTGACTmAgC-- ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 58 8 5 0 0 c 0 17 18 6 0 63 1 0 0 60 0 34 3 5 52 0 0 g 0 20 11 5 68 0 0 60 0 10 0 5 9 45 3 0 0 t 0 18 23 53 6 0 73 14 1 3 73 9 4 16 14 0 0

oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)
; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m3_rc; m=5/7; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.705478; -akTGmTTACTaAky-- ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 49 11 6 0 0 c 0 12 10 3 0 35 0 0 1 43 6 12 1 0 29 0 0 g 0 8 15 2 48 1 0 10 1 8 2 1 3 26 4 0 0 t 0 11 19 42 5 1 53 43 1 2 44 4 0 16 14 0 0

oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m3; m=6/7; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.588435; -mtwGCTTACTAAd--- ; cor=; Ncor= a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 0 0 0 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 0 0 0 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 0 0 0 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12 0 0 0

oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)
; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m5; m=7/7; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.464233; --mkGATGACka----- ; cor=; Ncor= a 0 0 8 3 0 23 1 0 23 0 1 11 0 0 0 0 0 c 0 0 7 2 0 0 0 0 0 24 1 3 0 0 0 0 0 g 0 0 5 8 24 1 0 21 0 0 7 5 0 0 0 0 0 t 0 0 4 11 0 0 23 3 1 0 15 5 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3; m=0 (reference); ncol1=14; shift=3; ncol=17; ---rmTtAGTAAkCAmt ; Alignment reference a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22
oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)				; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m3; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score= 1; ---rmTtAGTAAkCAmt ; cor=; Ncor= a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m4; m=2/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.884174; ---GcTkAGTCAGCAwy ; cor=; Ncor= a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19
oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m3_rc; m=3/7; ncol2=13; w=0; offset=1; strand=R; shift=4; score=0.877272; ----hTTAGTAAGCwak ; cor=; Ncor= a 0 0 0 0 12 4 1 28 2 0 32 31 1 1 16 15 6 c 0 0 0 0 10 5 0 3 3 0 1 1 0 31 4 5 4 g 0 0 0 0 1 1 7 2 28 1 0 0 31 0 4 8 13 t 0 0 0 0 10 23 25 0 0 32 0 1 1 1 9 5 10
oligos_7nt_mkv2_m1_rc_shift1 (oligos_7nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m1_rc; m=4/7; ncol2=16; w=-2; offset=-2; strand=R; shift=1; score=0.705478; -ytGCTGAsTCAGCary ; cor=; Ncor= a 0 9 11 0 11 0 0 66 0 0 7 67 0 0 36 18 12 c 0 20 13 0 55 0 1 1 27 0 60 0 1 67 11 14 21 g 0 15 11 66 1 0 53 0 40 0 0 0 52 0 9 20 14 t 0 23 32 1 0 67 13 0 0 67 0 0 14 0 11 15 20
oligos_7nt_mkv2_m2_rc_shift1 (oligos_7nt_mkv2_m2_rc)				; oligos_7nt_mkv2_m3 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=17; w=-2; offset=-2; strand=R; shift=1; score=0.705085; -tyGCTkASTCAkCAtt ; cor=; Ncor= a 0 8 9 0 5 1 1 46 0 0 6 44 2 0 33 11 8 c 0 11 12 0 38 0 1 0 14 0 40 1 0 44 5 11 7 g 0 7 6 44 1 1 19 0 32 0 0 0 19 0 4 10 9 t 0 20 19 2 2 44 25 0 0 46 0 1 25 2 4 14 22
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m1; m=6/7; ncol2=17; w=-3; offset=-3; strand=D; shift=0; score=0.674394; kytGCTGAsTCAGCary ; cor=; Ncor= a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18
oligos_6nt_mkv2_m5_rc_shift6 (oligos_6nt_mkv2_m5_rc)				; oligos_7nt_mkv2_m3 versus oligos_6nt_mkv2_m5_rc; m=7/7; ncol2=10; w=0; offset=3; strand=R; shift=6; score=0.517824; ------tmGTCATCmk- ; cor=; Ncor= a 0 0 0 0 0 0 5 15 0 1 3 23 0 0 11 4 0 c 0 0 0 0 0 0 5 7 0 0 21 0 1 24 8 5 0 g 0 0 0 0 0 0 3 1 24 0 0 0 0 0 2 7 0 t 0 0 0 0 0 0 11 1 0 23 0 1 23 0 3 8 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2; m=0 (reference); ncol1=17; shift=0; ncol=17; raaTGmTGASTmAGCra ; Alignment reference a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 2 19 20 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 44 6 7 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 0 12 11 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5 0 9 8
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m2; m=1/7; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; raaTGmTGASTmAGCra ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 2 19 20 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 44 6 7 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 0 12 11 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5 0 9 8
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m1; m=2/7; ncol2=16; w=0; offset=1; strand=D; shift=1; score= 0.8917; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 1 32 23 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 66 11 15 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 0 13 20 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11 0 11 9
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m1_rc; m=3/7; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.837277; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 67 0 1 38 19 c 0 14 20 6 0 54 0 0 0 39 0 53 0 1 66 9 16 g 0 20 12 11 67 0 0 57 0 28 1 0 0 54 0 10 19 t 0 15 21 39 0 0 67 10 0 0 66 0 0 12 0 10 13
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m4_rc; m=4/7; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.771609; -rwTGCTGACTmAgC-- ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 58 8 5 0 0 c 0 17 18 6 0 63 1 0 0 60 0 34 3 5 52 0 0 g 0 20 11 5 68 0 0 60 0 10 0 5 9 45 3 0 0 t 0 18 23 53 6 0 73 14 1 3 73 9 4 16 14 0 0
oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)				; oligos_7nt_mkv2_m2 versus oligos_7nt_mkv2_m3_rc; m=5/7; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.705085; -akTGmTTACTaAky-- ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 49 11 6 0 0 c 0 12 10 3 0 35 0 0 1 43 6 12 1 0 29 0 0 g 0 8 15 2 48 1 0 10 1 8 2 1 3 26 4 0 0 t 0 11 19 42 5 1 53 43 1 2 44 4 0 16 14 0 0
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m3; m=6/7; ncol2=13; w=0; offset=1; strand=D; shift=1; score=0.559433; -mtwGCTTACTAAd--- ; cor=; Ncor= a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 0 0 0 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 0 0 0 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 0 0 0 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12 0 0 0
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)				; oligos_7nt_mkv2_m2 versus oligos_6nt_mkv2_m5; m=7/7; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.517817; --mkGATGACka----- ; cor=; Ncor= a 0 0 8 3 0 23 1 0 23 0 1 11 0 0 0 0 0 c 0 0 7 2 0 0 0 0 0 24 1 3 0 0 0 0 0 g 0 0 5 8 24 1 0 21 0 0 7 5 0 0 0 0 0 t 0 0 4 11 0 0 23 3 1 0 15 5 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1; m=0 (reference); ncol1=17; shift=0; ncol=17; kytGCTGAsTCAGCary ; Alignment reference a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m1; m=1/7; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; kytGCTGAsTCAGCary ; cor=; Ncor= a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18
oligos_7nt_mkv2_m1_rc_shift1 (oligos_7nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m1_rc; m=2/7; ncol2=16; w=0; offset=1; strand=R; shift=1; score=0.938706; -ytGCTGAsTCAGCary ; cor=; Ncor= a 0 9 11 0 11 0 0 66 0 0 7 67 0 0 36 18 12 c 0 20 13 0 55 0 1 1 27 0 60 0 1 67 11 14 21 g 0 15 11 66 1 0 53 0 40 0 0 0 52 0 9 20 14 t 0 23 32 1 0 67 13 0 0 67 0 0 14 0 11 15 20
oligos_7nt_mkv2_m2_rc_shift1 (oligos_7nt_mkv2_m2_rc)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m2_rc; m=3/7; ncol2=17; w=0; offset=1; strand=R; shift=1; score=0.837277; -tyGCTkASTCAkCAtt ; cor=; Ncor= a 0 8 9 0 5 1 1 46 0 0 6 44 2 0 33 11 8 c 0 11 12 0 38 0 1 0 14 0 40 1 0 44 5 11 7 g 0 7 6 44 1 1 19 0 32 0 0 0 19 0 4 10 9 t 0 20 19 2 2 44 25 0 0 46 0 1 25 2 4 14 22
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m4; m=4/7; ncol2=14; w=0; offset=3; strand=D; shift=3; score=0.787646; ---GcTkAGTCAGCAwy ; cor=; Ncor= a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19
oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m1 versus oligos_7nt_mkv2_m3; m=5/7; ncol2=14; w=0; offset=3; strand=D; shift=3; score=0.674394; ---rmTtAGTAAkCAmt ; cor=; Ncor= a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22
oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m3_rc; m=6/7; ncol2=13; w=0; offset=4; strand=R; shift=4; score=0.567533; ----hTTAGTAAGCwak ; cor=; Ncor= a 0 0 0 0 12 4 1 28 2 0 32 31 1 1 16 15 6 c 0 0 0 0 10 5 0 3 3 0 1 1 0 31 4 5 4 g 0 0 0 0 1 1 7 2 28 1 0 0 31 0 4 8 13 t 0 0 0 0 10 23 25 0 0 32 0 1 1 1 9 5 10
oligos_6nt_mkv2_m5_rc_shift6 (oligos_6nt_mkv2_m5_rc)				; oligos_6nt_mkv2_m1 versus oligos_6nt_mkv2_m5_rc; m=7/7; ncol2=10; w=0; offset=6; strand=R; shift=6; score=0.429908; ------tmGTCATCmk- ; cor=; Ncor= a 0 0 0 0 0 0 5 15 0 1 3 23 0 0 11 4 0 c 0 0 0 0 0 0 5 7 0 0 21 0 1 24 8 5 0 g 0 0 0 0 0 0 3 1 24 0 0 0 0 0 2 7 0 t 0 0 0 0 0 0 11 1 0 23 0 1 23 0 3 8 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4; m=0 (reference); ncol1=14; shift=3; ncol=17; ---GcTkAGTCAGCAwy ; Alignment reference a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19
oligos_6nt_mkv2_m4_shift3 (oligos_6nt_mkv2_m4)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m4; m=1/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score= 1; ---GcTkAGTCAGCAwy ; cor=; Ncor= a 0 0 0 14 16 4 9 73 3 1 14 73 0 6 53 23 18 c 0 0 0 3 45 9 5 0 10 0 60 0 0 68 5 11 20 g 0 0 0 52 5 3 34 0 60 0 0 1 63 0 6 18 17 t 0 0 0 5 8 58 26 1 1 73 0 0 11 0 10 22 19
oligos_7nt_mkv2_m3_shift3 (oligos_7nt_mkv2_m3)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m3; m=2/7; ncol2=14; w=0; offset=0; strand=D; shift=3; score=0.884174; ---rmTtAGTAAkCAmt ; cor=; Ncor= a 0 0 0 14 16 0 4 44 2 1 43 53 1 5 42 19 11 c 0 0 0 4 26 3 1 2 8 1 10 0 1 48 2 15 8 g 0 0 0 29 0 1 12 6 43 1 0 0 35 0 3 10 12 t 0 0 0 6 11 49 36 1 0 50 0 0 16 0 6 9 22
oligos_7nt_mkv2_m1_rc_shift1 (oligos_7nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m1_rc; m=3/7; ncol2=16; w=-2; offset=-2; strand=R; shift=1; score=0.834212; -ytGCTGAsTCAGCary ; cor=; Ncor= a 0 9 11 0 11 0 0 66 0 0 7 67 0 0 36 18 12 c 0 20 13 0 55 0 1 1 27 0 60 0 1 67 11 14 21 g 0 15 11 66 1 0 53 0 40 0 0 0 52 0 9 20 14 t 0 23 32 1 0 67 13 0 0 67 0 0 14 0 11 15 20
oligos_6nt_mkv2_m1_shift0 (oligos_6nt_mkv2_m1)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m1; m=4/7; ncol2=17; w=-3; offset=-3; strand=D; shift=0; score=0.787646; kytGCTGAsTCAGCary ; cor=; Ncor= a 16 13 10 0 12 0 0 66 0 0 10 67 0 0 39 21 15 c 15 19 10 0 54 0 0 1 28 0 57 0 0 67 11 12 20 g 19 16 9 66 1 0 53 0 39 0 0 0 54 0 6 20 14 t 17 19 38 1 0 67 14 0 0 67 0 0 13 0 11 14 18
oligos_7nt_mkv2_m2_rc_shift1 (oligos_7nt_mkv2_m2_rc)				; oligos_6nt_mkv2_m4 versus oligos_7nt_mkv2_m2_rc; m=5/7; ncol2=17; w=-2; offset=-2; strand=R; shift=1; score=0.771609; -tyGCTkASTCAkCAtt ; cor=; Ncor= a 0 8 9 0 5 1 1 46 0 0 6 44 2 0 33 11 8 c 0 11 12 0 38 0 1 0 14 0 40 1 0 44 5 11 7 g 0 7 6 44 1 1 19 0 32 0 0 0 19 0 4 10 9 t 0 20 19 2 2 44 25 0 0 46 0 1 25 2 4 14 22
oligos_6nt_mkv2_m3_rc_shift4 (oligos_6nt_mkv2_m3_rc)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m3_rc; m=6/7; ncol2=13; w=0; offset=1; strand=R; shift=4; score=0.759915; ----hTTAGTAAGCwak ; cor=; Ncor= a 0 0 0 0 12 4 1 28 2 0 32 31 1 1 16 15 6 c 0 0 0 0 10 5 0 3 3 0 1 1 0 31 4 5 4 g 0 0 0 0 1 1 7 2 28 1 0 0 31 0 4 8 13 t 0 0 0 0 10 23 25 0 0 32 0 1 1 1 9 5 10
oligos_6nt_mkv2_m5_rc_shift6 (oligos_6nt_mkv2_m5_rc)				; oligos_6nt_mkv2_m4 versus oligos_6nt_mkv2_m5_rc; m=7/7; ncol2=10; w=0; offset=3; strand=R; shift=6; score=0.555689; ------tmGTCATCmk- ; cor=; Ncor= a 0 0 0 0 0 0 5 15 0 1 3 23 0 0 11 4 0 c 0 0 0 0 0 0 5 7 0 0 21 0 1 24 8 5 0 g 0 0 0 0 0 0 3 1 24 0 0 0 0 0 2 7 0 t 0 0 0 0 0 0 11 1 0 23 0 1 23 0 3 8 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=13; shift=1; ncol=14; -mtwGCTTACTAAd ; Alignment reference a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m3; m=1/6; ncol2=13; w=0; offset=0; strand=D; shift=1; score= 1; -mtwGCTTACTAAd ; cor=; Ncor= a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12
oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m3_rc; m=2/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.877272; -akTGmTTACTaAk ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 49 11 c 0 12 10 3 0 35 0 0 1 43 6 12 1 0 g 0 8 15 2 48 1 0 10 1 8 2 1 3 26 t 0 11 19 42 5 1 53 43 1 2 44 4 0 16
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m4_rc; m=3/6; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.759915; -rwTGCTGACTmAg ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 58 8 c 0 17 18 6 0 63 1 0 0 60 0 34 3 5 g 0 20 11 5 68 0 0 60 0 10 0 5 9 45 t 0 18 23 53 6 0 73 14 1 3 73 9 4 16
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m1; m=4/6; ncol2=16; w=0; offset=0; strand=D; shift=1; score=0.588435; -rytGCTGAsTCAG ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m3 versus oligos_6nt_mkv2_m1_rc; m=5/6; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.567533; -rytGCTGAsTCAG ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 67 0 c 0 14 20 6 0 54 0 0 0 39 0 53 0 1 g 0 20 12 11 67 0 0 57 0 28 1 0 0 54 t 0 15 21 39 0 0 67 10 0 0 66 0 0 12
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_6nt_mkv2_m3 versus oligos_7nt_mkv2_m2; m=6/6; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score=0.559433; raaTGmTGASTmAG ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)				; oligos_6nt_mkv2_m5; m=0 (reference); ncol1=10; shift=2; ncol=12; --mkGATGACka ; Alignment reference a 0 0 8 3 0 23 1 0 23 0 1 11 c 0 0 7 2 0 0 0 0 0 24 1 3 g 0 0 5 8 24 1 0 21 0 0 7 5 t 0 0 4 11 0 0 23 3 1 0 15 5
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)				; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m5; m=1/6; ncol2=10; w=0; offset=0; strand=D; shift=2; score= 1; --mkGATGACka ; cor=; Ncor= a 0 0 8 3 0 23 1 0 23 0 1 11 c 0 0 7 2 0 0 0 0 0 24 1 3 g 0 0 5 8 24 1 0 21 0 0 7 5 t 0 0 4 11 0 0 23 3 1 0 15 5
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m4_rc; m=2/6; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score=0.555689; -rwTGCTGACTm ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 c 0 17 18 6 0 63 1 0 0 60 0 34 g 0 20 11 5 68 0 0 60 0 10 0 5 t 0 18 23 53 6 0 73 14 1 3 73 9
oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)				; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m3_rc; m=3/6; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score=0.517824; -akTGmTTACTa ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 c 0 12 10 3 0 35 0 0 1 43 6 12 g 0 8 15 2 48 1 0 10 1 8 2 1 t 0 11 19 42 5 1 53 43 1 2 44 4
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m2; m=4/6; ncol2=17; w=-2; offset=-2; strand=D; shift=0; score=0.517817; raaTGmTGASTm ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 c 9 9 10 4 0 19 0 0 0 32 0 19 g 14 7 11 5 44 0 1 40 0 14 0 1 t 11 8 11 33 0 2 44 6 0 0 46 1
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_6nt_mkv2_m5 versus oligos_7nt_mkv2_m1; m=5/6; ncol2=16; w=-1; offset=-1; strand=D; shift=1; score=0.464233; -rytGCTGAsTC ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 c 0 14 20 9 0 52 0 0 0 40 0 53 g 0 21 14 11 67 1 0 60 0 27 1 1 t 0 12 18 36 0 0 67 7 0 0 66 0
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_6nt_mkv2_m5 versus oligos_6nt_mkv2_m1_rc; m=6/6; ncol2=17; w=-1; offset=-1; strand=R; shift=1; score=0.429908; -rytGCTGAsTC ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 c 0 14 20 6 0 54 0 0 0 39 0 53 g 0 20 12 11 67 0 0 57 0 28 1 0 t 0 15 21 39 0 0 67 10 0 0 66 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1; m=0 (reference); ncol1=16; shift=1; ncol=17; -rytGCTGAsTCAGCar ; Alignment reference a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 1 32 23 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 66 11 15 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 0 13 20 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11 0 11 9
oligos_7nt_mkv2_m1_shift1 (oligos_7nt_mkv2_m1)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m1; m=1/7; ncol2=16; w=0; offset=0; strand=D; shift=1; score= 1; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 20 15 11 0 14 0 0 67 0 0 13 67 0 1 32 23 c 0 14 20 9 0 52 0 0 0 40 0 53 0 1 66 11 15 g 0 21 14 11 67 1 0 60 0 27 1 1 0 55 0 13 20 t 0 12 18 36 0 0 67 7 0 0 66 0 0 11 0 11 9
oligos_6nt_mkv2_m1_rc_shift1 (oligos_6nt_mkv2_m1_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m1_rc; m=2/7; ncol2=17; w=0; offset=0; strand=R; shift=1; score=0.938706; -rytGCTGAsTCAGCar ; cor=; Ncor= a 0 18 14 11 0 13 0 0 67 0 0 14 67 0 1 38 19 c 0 14 20 6 0 54 0 0 0 39 0 53 0 1 66 9 16 g 0 20 12 11 67 0 0 57 0 28 1 0 0 54 0 10 19 t 0 15 21 39 0 0 67 10 0 0 66 0 0 12 0 10 13
oligos_7nt_mkv2_m2_shift0 (oligos_7nt_mkv2_m2)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m2; m=3/7; ncol2=17; w=-1; offset=-1; strand=D; shift=0; score= 0.8917; raaTGmTGASTmAGCra ; cor=; Ncor= a 12 22 14 4 2 25 1 0 46 0 0 25 44 2 2 19 20 c 9 9 10 4 0 19 0 0 0 32 0 19 1 1 44 6 7 g 14 7 11 5 44 0 1 40 0 14 0 1 0 38 0 12 11 t 11 8 11 33 0 2 44 6 0 0 46 1 1 5 0 9 8
oligos_6nt_mkv2_m4_rc_shift1 (oligos_6nt_mkv2_m4_rc)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m4_rc; m=4/7; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.834212; -rwTGCTGACTmAgC-- ; cor=; Ncor= a 0 19 22 10 0 11 0 0 73 1 1 26 58 8 5 0 0 c 0 17 18 6 0 63 1 0 0 60 0 34 3 5 52 0 0 g 0 20 11 5 68 0 0 60 0 10 0 5 9 45 3 0 0 t 0 18 23 53 6 0 73 14 1 3 73 9 4 16 14 0 0
oligos_7nt_mkv2_m3_rc_shift1 (oligos_7nt_mkv2_m3_rc)				; oligos_7nt_mkv2_m1 versus oligos_7nt_mkv2_m3_rc; m=5/7; ncol2=14; w=0; offset=0; strand=R; shift=1; score=0.705478; -akTGmTTACTaAky-- ; cor=; Ncor= a 0 22 9 6 0 16 0 0 50 0 1 36 49 11 6 0 0 c 0 12 10 3 0 35 0 0 1 43 6 12 1 0 29 0 0 g 0 8 15 2 48 1 0 10 1 8 2 1 3 26 4 0 0 t 0 11 19 42 5 1 53 43 1 2 44 4 0 16 14 0 0
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m3; m=6/7; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.588435; -mtwGCTTACTAAd--- ; cor=; Ncor= a 0 10 5 9 1 1 1 0 32 0 0 25 23 10 0 0 0 c 0 13 8 4 0 31 0 0 1 28 2 7 1 1 0 0 0 g 0 4 5 4 31 0 1 1 0 3 3 0 5 10 0 0 0 t 0 6 15 16 1 1 31 32 0 2 28 1 4 12 0 0 0
oligos_6nt_mkv2_m5_shift2 (oligos_6nt_mkv2_m5)				; oligos_7nt_mkv2_m1 versus oligos_6nt_mkv2_m5; m=7/7; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.464233; --mkGATGACka----- ; cor=; Ncor= a 0 0 8 3 0 23 1 0 23 0 1 11 0 0 0 0 0 c 0 0 7 2 0 0 0 0 0 24 1 3 0 0 0 0 0 g 0 0 5 8 24 1 0 21 0 0 7 5 0 0 0 0 0 t 0 0 4 11 0 0 23 3 1 0 15 5 0 0 0 0 0