RSAT - peak-motifs result

Analysis: 6h_As_N3 (03/04/2025 12:43)

peak-motifs  -v 1 -title 6h_As_N3 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124321_2025-04-03.124321_p2X2cO/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124321_2025-04-03.124321_p2X2cO

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: ctcgtacgag (sig=2.63; e-value=0.0023) RC: ctcgtacgag oligos_6nt_mkv2_m2 assembly: ccgtacgag (sig=2.63; e-value=0.0023) RC: ctcgtacgg oligos_6nt_mkv2_m3 assembly: gatatc (sig=0.67; e-value=0.21) RC: gatatc oligos_6nt_mkv2_m4 assembly: aaaggc (sig=0.21; e-value=0.62) RC: gccttt oligos_6nt_mkv2_m5 assembly: agtcac (sig=0.14; e-value=0.72) RC: gtgact	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ctcgtacgag (sig=5.95; e-value=1.1e-06) RC: ctcgtacgag oligos_7nt_mkv2_m2 assembly: ccgtacgag (sig=5.95; e-value=1.1e-06) RC: ctcgtacgg oligos_7nt_mkv2_m3 assembly: agatatct (sig=1.01; e-value=0.098) RC: agatatct oligos_7nt_mkv2_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=2.63; evalue=0.0023 rsmyCGTACGrksy RSMYCGTACGRKSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (15.84%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3395878-3395978(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=2.63; evalue=0.0023 yaCCGTACGAgmh DKCTCGTACGGTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (20.79%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3118064-3118164(.)) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=0.67; evalue=0.21 ymGATATCtr YAGATATCKR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (13.86%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3366659-3366759(.)) Mean nb of predicted sites per peak: 1.93	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.21; evalue=0.62 mcAAAGGCmm KKGCCTTTGK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (14.85%) Max nb of predicted sites per peak: 1  (ChrV_A_nidulans_FGSC_A4:2704864-2704964(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.14; evalue=0.72 ycAGTCACst ASGTGACTGR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (6.93%) Max nb of predicted sites per peak: 1  (ChrVI_A_nidulans_FGSC_A4:3345064-3345164(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=5.95; evalue=1.1e-06 rsmyCGTACGrksy RSMYCGTACGRKSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (15.84%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3395878-3395978(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=5.95; evalue=1.1e-06 yaCCGTACGAgmw WKCTCGTACGGTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (20.79%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3118064-3118164(.)) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=1.01; evalue=0.098 kmAGATATCtwm KWAGATATCTKM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (9.90%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3366659-3366759(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 6h_As_N3 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124321_2025-04-03.124321_p2X2cO/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124321_2025-04-03.124321_p2X2cO

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124321_2025-04-03.124321_p2X2cO/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124321_2025-04-03.124321_p2X2cO/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab