RSAT - peak-motifs result

Analysis: 8h_Se_N5 (03/04/2025 12:44)

peak-motifs  -v 1 -title 8h_Se_N5 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124351_2025-04-03.124351_lG4phc/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124351_2025-04-03.124351_lG4phc

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tgctgagtcagca (sig=25.09; e-value=8.1e-26) RC: tgctgactcagca oligos_6nt_mkv2_m2 assembly: gcacgtgc (sig=7.35; e-value=4.5e-08) RC: gcacgtgc oligos_6nt_mkv2_m3 assembly: tgcttagtcagca (sig=19.11; e-value=7.8e-20) RC: tgctgactaagca oligos_6nt_mkv2_m4 assembly: tgctgagtcatca (sig=25.09; e-value=8.1e-26) RC: tgatgactcagca oligos_6nt_mkv2_m5 assembly: tgcttact (sig=4.62; e-value=2.4e-05) RC: agtaagca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: atgctgactcagcat (sig=40.13; e-value=7.4e-41) RC: atgctgagtcagcat oligos_7nt_mkv2_m2 assembly: atgatgactaagc (sig=16.09; e-value=8.1e-17) RC: gcttagtcatcat oligos_7nt_mkv2_m3 assembly: tgagtaagca (sig=7.89; e-value=1.3e-08) RC: tgcttactca oligos_7nt_mkv2_m4 assembly: atgctgactcatc (sig=40.13; e-value=7.4e-41) RC: gatgagtcagcat oligos_7nt_mkv2_m5 assembly: atgatgactcagcat (sig=40.13; e-value=7.4e-41) RC: atgctgagtcatcat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=25.09; evalue=8.1e-26 aytGCTGAsTCAKCart AYTGMTGASTCAGCART	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (59.33%) Max nb of predicted sites per peak: 4  (ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)) Mean nb of predicted sites per peak: 1.92	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=7.35; evalue=4.5e-08 mrkCACGTGmyk MRKCACGTGMYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (11.33%) Max nb of predicted sites per peak: 2  (ChrVI_A_nidulans_FGSC_A4:3212203-3212303(.)) Mean nb of predicted sites per peak: 1.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=19.11; evalue=7.8e-20 mttGmTkAGTCAGCAdt AHTGCTGACTMAKCAAK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 91 (60.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624421-624521(.)) Mean nb of predicted sites per peak: 1.85	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=25.09; evalue=8.1e-26 mytGCTGAsTCAkCadt AHTGMTGASTCAGCARK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 88 (58.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624421-624521(.)) Mean nb of predicted sites per peak: 1.90	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=4.62; evalue=2.4e-05 myTGCTkACTmA TKAGTMAGCARK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 78 (52.00%) Max nb of predicted sites per peak: 2  (ChrVI_A_nidulans_FGSC_A4:913050-913150(.)) Mean nb of predicted sites per peak: 1.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=40.13; evalue=7.4e-41 rahtGMTGAsTCAGCarty RAYTGCTGASTCAKCADTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (59.33%) Max nb of predicted sites per peak: 4  (ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)) Mean nb of predicted sites per peak: 1.93	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=16.09; evalue=8.1e-17 ramtGmTGACTmAGCar YTGCTKAGTCAKCAKTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (59.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624421-624521(.)) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=7.89; evalue=1.3e-08 rmTGAGTmAGCark MYTGCTKACTCAKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (59.33%) Max nb of predicted sites per peak: 3  (ChrVII_A_nidulans_FGSC_A4:1292719-1292819(.)) Mean nb of predicted sites per peak: 1.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=40.13; evalue=7.4e-41 rahtGCTGASTCAkCam KTGMTGASTCAGCADTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 89 (59.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624421-624521(.)) Mean nb of predicted sites per peak: 1.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=40.13; evalue=7.4e-41 rahtGmTGAsTCAGCarkc GMYTGCTGASTCAKCADTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 88 (58.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624421-624521(.)) Mean nb of predicted sites per peak: 1.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 8h_Se_N5 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124351_2025-04-03.124351_lG4phc/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124351_2025-04-03.124351_lG4phc

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124351_2025-04-03.124351_lG4phc/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124351_2025-04-03.124351_lG4phc/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab