/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124409_2025-04-03.124409_qIcBHR/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124409_2025-04-03.124409_qIcBHR/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 8h_Se_N5 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124409_2025-04-03.124409_qIcBHR/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124409_2025-04-03.124409_qIcBHR/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124409_2025-04-03.124409_qIcBHR/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	150
	Sum of sequence lengths      	15000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	14850
 Oligonucleotide statistics:
	Total occurrences    	11719
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	14850
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	150	1500
	2	-2	[-39,-20]	-29.5	150	3000
	3	-1	[-19,0]	-9.5	150	3000
	4	0	[1,20]	10.5	150	3000
	5	1	[21,40]	30.5	150	3000
	6	2	[41,60]	50.5	150	1350

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
tt tt 716 31.9 5 6.3e-06 0.0001 4.00 1 103 134 139 101 170 69
ca ca 767 28.2 5 3.4e-05 0.00054 3.27 2 66 142 125 210 156 68
gg gg 769 21.1 5 7.9e-04 0.013 1.90 3 98 174 152 113 151 81
cc cc 683 19.9 5 1.3e-03 0.021 1.67 4 71 123 107 137 162 83
tg tg 850 16.7 5 5.1e-03 0.081 1.09 5 98 184 202 141 148 77
ag ag 840 14.9 5 1.1e-02 0.17 0.76 6 78 156 167 213 161 65
ga ga 767 12.5 5 2.9e-02 0.46 0.34 7 83 140 191 141 150 62
aa aa 693 12.1 5 3.4e-02 0.55 0.26 8 73 164 126 116 139 75
gc gc 859 10.0 5 7.6e-02 1.2 -0.08 9 85 181 177 200 154 62
tc tc 728 7.3 5 2.0e-01 3.2 -0.50 10 71 142 125 154 156 80
gt gt 639 6.8 5 2.3e-01 3.7 -0.57 11 75 141 109 120 135 59
cg cg 583 6.0 5 3.0e-01 4.9 -0.69 12 72 124 104 107 122 54
ct ct 818 4.1 5 5.3e-01 8.5 -0.93 13 78 164 186 152 161 77
ta ta 658 3.2 5 6.7e-01 11 -1.03 14 72 136 119 133 130 68
at at 765 2.3 5 8.1e-01 13 -1.11 15 80 158 147 155 146 79
ac ac 584 2.0 5 8.4e-01 14 -1.13 16 57 114 110 118 130 55 
 Host name	rsat
 Job started	2025-04-03.124412
 Job done	2025-04-03.124412
 Seconds	0.2
	user	0.2
	system	0.01
	cuser	0.01
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