AC  assembly_1
XX
ID  gatgactaagc
XX
DE  nnGATGACTAAGCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.00      8.46      0.00
4         8.46      0.00      0.00      0.00
5         0.00      0.00      0.00     12.22
6         0.00      0.00     12.22      0.00
7        12.22      0.00      0.00      0.00
8         0.00     12.22      0.00      0.00
9         0.00      0.00      0.00     12.22
10       12.22      0.00      0.00      0.00
11       12.22      0.00      0.00      0.00
12        0.00      0.00      4.50      0.00
13        0.00      3.02      0.00      0.00
14        0.00      0.00      0.00      0.00
15        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: gatgactaagc
CC  asmb.seed: tgactaa
CC  matrix.nb: 1
CC  sites: 5
CC  consensus.strict: --GATGACTAAGC--
CC  consensus.strict.rc: --GCTTAGTCATC--
CC  consensus.IUPAC: nnGATGACTAAGCnn
CC  consensus.IUPAC.rc: NNGCTTAGTCATCNN
CC  consensus.regexp: [acgt][acgt]GATGACTAAGC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GCTTAGTCATC[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  tgctgactcagc
XX
DE  nnTGCTGACTCAGCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.00      0.00      3.60
4         0.00      0.00     10.26      0.00
5         0.00     10.26      0.00      0.00
6         0.00      0.00      0.00     11.45
7         0.00      0.00     11.45      0.00
8        11.45      0.00      0.00      0.00
9         0.00     11.45      0.00      0.00
10        0.00      0.00      0.00     11.45
11        0.00     11.45      0.00      0.00
12       11.45      0.00      0.00      0.00
13        0.00      0.00      6.11      0.00
14        0.00      6.11      0.00      0.00
15        0.00      0.00      0.00      0.00
16        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: tgctgactcagc
CC  asmb.seed: tgactca
CC  matrix.nb: 2
CC  sites: 6
CC  consensus.strict: --TGCTGACTCAGC--
CC  consensus.strict.rc: --GCTGAGTCAGCA--
CC  consensus.IUPAC: nnTGCTGACTCAGCnn
CC  consensus.IUPAC.rc: NNGCTGAGTCAGCANN
CC  consensus.regexp: [acgt][acgt]TGCTGACTCAGC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GCTGAGTCAGCA[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  gattagtaagca
XX
DE  nngATTAGTAAGCAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.00      0.13      0.00
4         1.83      0.00      0.00      0.00
5         0.00      0.00      0.00      3.55
6         0.00      0.00      0.00      3.55
7         7.82      0.00      0.00      0.00
8         0.00      0.00      7.82      0.00
9         0.00      0.00      0.00      7.82
10        7.82      0.00      0.00      0.00
11        7.82      0.00      0.00      0.00
12        0.00      0.00      7.82      0.00
13        0.00      7.82      0.00      0.00
14        2.04      0.00      0.00      0.00
15        0.00      0.00      0.00      0.00
16        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: gattagtaagca
CC  asmb.seed: agtaagc
CC  matrix.nb: 3
CC  sites: 6
CC  consensus.strict: --gATTAGTAAGCA--
CC  consensus.strict.rc: --TGCTTACTAATC--
CC  consensus.IUPAC: nngATTAGTAAGCAnn
CC  consensus.IUPAC.rc: NNTGCTTACTAATCNN
CC  consensus.regexp: [acgt][acgt]gATTAGTAAGCA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TGCTTACTAATC[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  ctatcta
XX
DE  nnCTATCTAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      2.07      0.00      0.00
4         0.00      0.00      0.00      2.07
5         2.07      0.00      0.00      0.00
6         0.00      0.00      0.00      2.07
7         0.00      2.07      0.00      0.00
8         0.00      0.00      0.00      2.07
9         2.07      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: ctatcta
CC  asmb.seed: ctatcta
CC  matrix.nb: 4
CC  sites: 1
CC  consensus.strict: --CTATCTA--
CC  consensus.strict.rc: --TAGATAG--
CC  consensus.IUPAC: nnCTATCTAnn
CC  consensus.IUPAC.rc: NNTAGATAGNN
CC  consensus.regexp: [acgt][acgt]CTATCTA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TAGATAG[ACGT][ACGT]
XX
//
AC  assembly_5
XX
ID  actaaata
XX
DE  nnactaaatann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.04      0.00      0.00      0.00
4         0.00      0.85      0.00      0.00
5         0.00      0.00      0.00      0.85
6         0.85      0.00      0.00      0.00
7         0.85      0.00      0.00      0.00
8         0.85      0.00      0.00      0.00
9         0.00      0.00      0.00      0.85
10        0.85      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 5
CC  id: assembly_5
CC  name: actaaata
CC  asmb.seed: ctaaata
CC  matrix.nb: 5
CC  sites: 2
CC  consensus.strict: --actaaata--
CC  consensus.strict.rc: --TATTTAGT--
CC  consensus.IUPAC: nnactaaatann
CC  consensus.IUPAC.rc: NNTATTTAGTNN
CC  consensus.regexp: [acgt][acgt]actaaata[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TATTTAGT[ACGT][ACGT]
XX
//
