; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	R	2	16	CGATTAGTCATCATT	12.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	D	4	18	TGATGACTAATCGAG	8.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTGACTCAGCGCG	11.0
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGCTGAGTCAGCATC	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTTAGTCATCTCA	9.0
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	D	-6	8	AGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGGTGAGTCAGCCAG	8.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGACTCATCATT	13.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGAGTCAGCAGT	14.0
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	R	6	20	GGCTGAGTCATCCAG	10.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	D	8	22	GGATGACTCAGCCGG	10.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	R	3	17	TGCTGAGTCAGCCGA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	D	5	19	GGCTGACTCAGCATT	13.0
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m1	D	2	16	AGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTGACTCAGCCGC	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	D	-6	8	GGCTGAGTCAGCAGG	13.2
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	R	-10	4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGCTTAGTCATCATT	13.0
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	R	0	14	TGCTGAGTCATTTGT	7.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	D	2	16	AAATGACTCAGCAAC	8.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	R	9	23	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	D	11	25	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	R	-4	10	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGATTAGTCATCTGA	9.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGACTAATCAGA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGCTGACTCATCACA	11.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	D	-9	5	TGATGAGTCAGCAGC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGATTAGTCATTATT	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	R	-20	-6	TGATGACTAAGCGAG	9.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGCTTACTCAGCTTG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	D	-12	2	AGCTGAGTAAGCAGA	10.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	-5	9	GGCTGAGTCAGCCAC	12.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	-3	11	GGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	30	44	CGCTGACTCATCGCC	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	32	46	CGATGAGTCAGCGAC	12.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m1	D	-4	10	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	R	-1	13	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	D	1	15	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	D	-9	5	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	R	8	22	GGCTTACTCATCATT	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	D	10	24	TGATGAGTAAGCCAG	9.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGCTGACTCAGCTCC	10.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	D	-5	9	AGCTGAGTCAGCAGT	13.3
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m1	R	-6	8	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m1	R	7	21	CGCTTAGTCATTATT	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m1	R	-8	6	CGATTAGTCATTATT	8.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGATTACTAAGCATA	9.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TGCTTAGTAATCAAT	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-42	-28	TTCTTAGTCAGGATG	7.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGATGAGTCATCGTG	12.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATGACTCATCAGC	11.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	TGATGACTCAGCAAG	12.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	D	-15	-1	TGCTGAGTCATCACT	13.0
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGAGTCATCTAT	11.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	D	-11	3	AGATGACTCAGCAAC	11.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	TACTTAGTCAGCATT	11.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	1	15	ATCTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m1	R	11	25	TGCTCAGTAAGCAGG	9.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTGAGTAAGCATA	11.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGCTTACTCAGCGGA	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	35	49	GGATCAGTCAGCGGA	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	R	-4	10	AGATGACTAAGCACA	8.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGCTTAGTCATCTAT	10.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	R	-39	-25	AGCTGACTCAGCATC	12.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	D	-37	-23	TGCTGAGTCAGCTAA	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTTAGTCATCATT	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGATGACTAAGCGCT	8.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	CGATGACTCAGCAAC	12.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	TGCTGAGTCATCGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	R	-2	12	CGCTTACTCATCTCT	8.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGAGTAAGCGAT	9.3
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	CGCTTACTCAGCAGA	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	D	-13	1	TGCTGAGTAAGCGGC	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	R	-3	11	GGCTTAGTCAGCTGG	10.3
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	D	-1	13	AGCTGACTAAGCCCT	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTTACTAATCACG	9.2
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	D	0	14	TGATTAGTAAGCAGA	10.2
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	R	-1	13	TGCTGCGTCAGCCAC	9.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	D	1	15	GGCTGACGCAGCAGG	9.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGCTGAGTAAGCAAT	12.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTTACTCAGCAAT	12.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	AGCTTAGTCAGTATT	9.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATGACTAAGCAAA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	D	-12	2	TGCTTAGTCATCACA	11.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	R	-6	8	TGATGAGTCAGCTTC	11.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	D	-4	10	AGCTGACTCATCAGT	11.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGATGACTCAGCAAC	12.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTGAGTCATCAAA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	GTATCAGTCAGCATG	9.1
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m1	R	-25	-11	GTCTTAGTCAGCATC	11.2
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m1	D	-21	-7	GTATCAGTCAGCAGA	8.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATTAGTCATCGGT	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	D	-12	2	CGATGACTAATCAGT	10.0
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	R	-13	1	CGCTTAGTCATCACC	11.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGACTAAGCGAG	9.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m1	D	27	41	GTCTTAGTCAGCATC	11.2
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m1	15	4	0	-45.800	15.400	61.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m1	103	0
;		TOTAL          	103	0
; Host name	rsat
; Job started	2025-04-03.124519
; Job done	2025-04-03.124519
; Seconds	0.14
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.02
