; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m5	D	2	18	AATGATGACTAATCGAG	14.5
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGCGCTGAGTCAGCATC	9.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	R	-2	14	GATGCTGACTCAGCGCG	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m5	D	-8	8	TGAGATGACTAAGCAAC	11.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	D	-13	3	AATGATGAGTCAGCAGT	13.7
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	R	-13	3	ACTGCTGACTCATCATT	13.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	D	6	22	CTGGATGACTCAGCCGG	9.8
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	R	6	22	CCGGCTGAGTCATCCAG	8.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	D	3	19	TCGGCTGACTCAGCATT	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	R	3	19	AATGCTGAGTCAGCCGA	12.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	D	0	16	TAAGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	R	0	16	GTTGCTTACTAATCTTA	9.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	D	-8	8	GCGGCTGAGTCAGCAGG	10.9
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	R	-8	8	CCTGCTGACTCAGCCGC	12.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATGATGACTAAGCGAG	15.4
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m5	D	0	16	ACAAATGACTCAGCAAC	10.4
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m5	D	9	25	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m5	D	-4	12	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	D	-2	14	TCAGATGACTAATCAGA	11.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGATTAGTCATCTGA	7.9
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	D	-11	5	TGTGATGAGTCAGCAGC	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	R	-11	5	GCTGCTGACTCATCACA	12.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATAATGACTAATCGAG	11.9
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	D	-14	2	CAAGCTGAGTAAGCAGA	11.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TCTGCTTACTCAGCTTG	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	-5	11	GTGGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	-5	11	CTGGCTGAGTCAGCCAC	8.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	30	46	GGCGATGAGTCAGCGAC	10.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	30	46	GTCGCTGACTCATCGCC	10.1
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m5	R	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m5	D	-1	15	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m5	R	-11	5	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m5	D	8	24	AATGATGAGTAAGCCAG	13.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	D	-7	9	GGAGCTGAGTCAGCAGT	10.6
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ACTGCTGACTCAGCTCC	11.9
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m5	D	-21	-5	AATAATGACTAATTGAG	8.2
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m5	D	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m5	D	7	23	AATAATGACTAAGCGAG	12.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m5	D	-8	8	AATAATGACTAATCGAG	11.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	D	-7	9	TATGCTTAGTAATCAAT	10.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ATTGATTACTAAGCATA	11.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-44	-28	CATCCTGACTAAGAAGG	8.4
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	D	-8	8	CACGATGACTCATCAGC	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-8	8	GCTGATGAGTCATCGTG	11.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	D	-17	-1	CTTGCTGAGTCATCACT	10.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	R	-17	-1	AGTGATGACTCAGCAAG	14.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	D	-13	3	ATAGATGACTCAGCAAC	12.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	R	-13	3	GTTGCTGAGTCATCTAT	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGCTGACTAAGTACG	12.7
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-1	15	AATGCTGACTAAGATAT	11.6
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	D	11	27	CCTGCTTACTGAGCAGT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	R	11	27	ACTGCTCAGTAAGCAGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	D	-16	0	TATGCTTACTCAGCGGA	11.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	R	-16	0	TCCGCTGAGTAAGCATA	10.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m5	R	-7	9	CATGCTGACTAATAATT	10.3
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	D	-4	12	TGTGCTTAGTCATCTAT	7.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	R	-4	12	ATAGATGACTAAGCACA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	D	-39	-23	GATGCTGAGTCAGCTAA	11.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	R	-39	-23	TTAGCTGACTCAGCATC	10.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	D	-16	0	AATGATGACTAAGCGCT	13.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	R	-16	0	AGCGCTTAGTCATCATT	7.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	D	-18	-2	GTTGCTGAGTCATCGCT	10.8
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AGCGATGACTCAGCAAC	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m5	D	-2	14	AGAGATGAGTAAGCGAT	11.1
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	D	-15	1	TCTGCTGAGTAAGCGGC	12.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	R	-15	1	GCCGCTTACTCAGCAGA	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m5	D	-3	13	CCAGCTGACTAAGCCCT	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGTGATTAGTAAGCAGA	10.4
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGCTTACTAATCACG	11.8
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m5	D	-1	15	GTGGCTGACGCAGCAGG	8.1
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	D	-12	4	ATTGCTTACTCAGCAAT	12.6
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	R	-12	4	ATTGCTGAGTAAGCAAT	13.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m5	D	-15	1	AATACTGACTAAGCTAT	11.4
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m5	D	-23	-7	AATAATGACTAATTGAG	8.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	D	-14	2	TTTGCTTAGTCATCACA	9.1
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TGTGATGACTAAGCAAA	13.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	D	-6	10	GAAGCTGACTCATCAGT	11.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	R	-6	10	ACTGATGAGTCAGCTTC	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	D	-12	4	GTTGCTGAGTCATCAAA	12.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	R	-12	4	TTTGATGACTCAGCAAC	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	R	-8	8	ATTAATGACTAATCGAG	11.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	D	3	19	ATTAATTAGTAAGCTAG	7.6
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m5	D	-25	-9	GATGCTGACTAAGACTG	11.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	D	-14	2	ACCGATGACTAATCAGT	12.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	R	-14	2	ACTGATTAGTCATCGGT	10.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m5	D	-13	3	GGTGATGACTAAGCGAG	13.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m5	R	25	41	GATGCTGACTAAGACTG	11.3
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m5	17	4	0	-51.400	16.500	67.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m5	89	0
;		TOTAL          	89	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124523
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0.07
;	csystem	0.04
