; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	R	2	16	CGATTAGTCATCATT	12.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	D	4	18	TGATGACTAATCGAG	8.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTGACTCAGCGCG	11.0
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGCTGAGTCAGCATC	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTTAGTCATCTCA	9.0
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	D	-6	8	AGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGGTGAGTCAGCCAG	8.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGACTCATCATT	13.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGAGTCAGCAGT	14.0
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	R	6	20	GGCTGAGTCATCCAG	10.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	D	8	22	GGATGACTCAGCCGG	10.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	R	3	17	TGCTGAGTCAGCCGA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	D	5	19	GGCTGACTCAGCATT	13.0
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m1	D	2	16	AGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTGACTCAGCCGC	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	D	-6	8	GGCTGAGTCAGCAGG	13.2
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	R	-10	4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGCTTAGTCATCATT	13.0
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	R	0	14	TGCTGAGTCATTTGT	7.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	D	2	16	AAATGACTCAGCAAC	8.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	R	9	23	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	D	11	25	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	R	-4	10	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGATTAGTCATCTGA	9.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGACTAATCAGA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGCTGACTCATCACA	11.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	D	-9	5	TGATGAGTCAGCAGC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGATTAGTCATTATT	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	R	-20	-6	TGATGACTAAGCGAG	9.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGCTTACTCAGCTTG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	D	-12	2	AGCTGAGTAAGCAGA	10.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	-5	9	GGCTGAGTCAGCCAC	12.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	-3	11	GGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	30	44	CGCTGACTCATCGCC	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	32	46	CGATGAGTCAGCGAC	12.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m1	D	-4	10	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	R	-1	13	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	D	1	15	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	D	-9	5	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	R	8	22	GGCTTACTCATCATT	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	D	10	24	TGATGAGTAAGCCAG	9.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGCTGACTCAGCTCC	10.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	D	-5	9	AGCTGAGTCAGCAGT	13.3
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m1	R	-6	8	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m1	R	7	21	CGCTTAGTCATTATT	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m1	R	-8	6	CGATTAGTCATTATT	8.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGATTACTAAGCATA	9.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TGCTTAGTAATCAAT	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-42	-28	TTCTTAGTCAGGATG	7.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGATGAGTCATCGTG	12.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATGACTCATCAGC	11.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	TGATGACTCAGCAAG	12.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	D	-15	-1	TGCTGAGTCATCACT	13.0
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGAGTCATCTAT	11.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	D	-11	3	AGATGACTCAGCAAC	11.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	TACTTAGTCAGCATT	11.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	1	15	ATCTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m1	R	11	25	TGCTCAGTAAGCAGG	9.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTGAGTAAGCATA	11.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGCTTACTCAGCGGA	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	35	49	GGATCAGTCAGCGGA	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	R	-4	10	AGATGACTAAGCACA	8.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGCTTAGTCATCTAT	10.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	R	-39	-25	AGCTGACTCAGCATC	12.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	D	-37	-23	TGCTGAGTCAGCTAA	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTTAGTCATCATT	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGATGACTAAGCGCT	8.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	CGATGACTCAGCAAC	12.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	TGCTGAGTCATCGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	R	-2	12	CGCTTACTCATCTCT	8.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGAGTAAGCGAT	9.3
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	CGCTTACTCAGCAGA	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	D	-13	1	TGCTGAGTAAGCGGC	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	R	-3	11	GGCTTAGTCAGCTGG	10.3
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	D	-1	13	AGCTGACTAAGCCCT	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTTACTAATCACG	9.2
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	D	0	14	TGATTAGTAAGCAGA	10.2
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	R	-1	13	TGCTGCGTCAGCCAC	9.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	D	1	15	GGCTGACGCAGCAGG	9.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGCTGAGTAAGCAAT	12.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTTACTCAGCAAT	12.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	AGCTTAGTCAGTATT	9.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATGACTAAGCAAA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	D	-12	2	TGCTTAGTCATCACA	11.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	R	-6	8	TGATGAGTCAGCTTC	11.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	D	-4	10	AGCTGACTCATCAGT	11.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGATGACTCAGCAAC	12.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTGAGTCATCAAA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	GTATCAGTCAGCATG	9.1
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m1	R	-25	-11	GTCTTAGTCAGCATC	11.2
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m1	D	-21	-7	GTATCAGTCAGCAGA	8.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATTAGTCATCGGT	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	D	-12	2	CGATGACTAATCAGT	10.0
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	R	-13	1	CGCTTAGTCATCACC	11.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGACTAAGCGAG	9.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m1	D	27	41	GTCTTAGTCAGCATC	11.2
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m1	15	4	0	-45.800	15.400	61.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m1	103	0
;		TOTAL          	103	0
; Host name	rsat
; Job started	2025-04-03.124519
; Job done	2025-04-03.124519
; Seconds	0.14
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m2	D	2	16	AATGATGACTAATCG	15.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m2	R	0	14	GATGCTGACTCAGCG	13.3
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	D	-8	6	TGAGATGACTAAGCA	8.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GTTGCTTAGTCATCT	8.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	D	-13	1	AATGATGAGTCAGCA	10.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACTGCTGACTCATCA	13.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	D	3	17	TCGGCTGACTCAGCA	8.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	R	5	19	AATGCTGAGTCAGCC	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTTACTAATCT	11.2
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m2	R	-6	8	CCTGCTGACTCAGCC	10.9
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATGATGACTAAGCG	14.5
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	-23	-9	AAAGCTTACTAATGG	8.2
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	D	0	14	ACAAATGACTCAGCA	7.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTGAGTCATTT	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m2	D	9	23	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m2	D	-4	10	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m2	D	-2	12	TCAGATGACTAATCA	10.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m2	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	D	-11	3	TGTGATGAGTCAGCA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	R	-9	5	GCTGCTGACTCATCA	12.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATAATGACTAATCG	13.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	D	-14	0	CAAGCTGAGTAAGCA	9.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TCTGCTTACTCAGCT	8.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	D	-5	9	GTGGCTGACTCAGCC	7.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	R	32	46	GTCGCTGACTCATCG	12.0
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m2	R	-4	10	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m2	D	-1	13	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m2	R	-9	5	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m2	D	8	22	AATGATGAGTAAGCC	11.3
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ACTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m2	D	-21	-7	AATAATGACTAATTG	11.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m2	D	-6	8	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m2	D	7	21	AATAATGACTAAGCG	12.3
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m2	D	-8	6	AATAATGACTAATCG	13.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	D	-7	7	TATGCTTAGTAATCA	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ATTGATTACTAAGCA	10.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-42	-28	CATCCTGACTAAGAA	8.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	D	-8	6	CACGATGACTCATCA	11.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GCTGATGAGTCATCG	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CTTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	R	-15	-1	AGTGATGACTCAGCA	10.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	D	-13	1	ATAGATGACTCAGCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	R	-11	3	GTTGCTGAGTCATCT	10.5
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGCTGACTAAGTA	12.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	1	15	AATGCTGACTAAGAT	12.4
ChrI_A_nidulans_FGSC_A4:2695806-2695906(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACAAATGACTAATAT	7.9
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m2	D	11	25	CCTGCTTACTGAGCA	8.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	TATGCTTACTCAGCG	10.7
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	-14	0	TCCGCTGAGTAAGCA	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	35	49	TCCGCTGACTGATCC	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m2	R	-5	9	CATGCTGACTAATAA	12.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m2	R	-2	12	ATAGATGACTAAGCA	10.8
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	D	-39	-25	GATGCTGAGTCAGCT	10.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	R	-37	-23	TTAGCTGACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	AATGATGACTAAGCG	14.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	D	-18	-4	GTTGCTGAGTCATCG	11.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AGCGATGACTCAGCA	8.8
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	D	-2	12	AGAGATGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	R	0	14	ATCGCTTACTCATCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	TCTGCTGAGTAAGCG	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m2	D	-3	11	CCAGCTGACTAAGCC	9.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	D	-2	12	CGTGATTAGTAAGCA	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	R	0	14	TCTGCTTACTAATCA	11.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	D	-12	2	ATTGCTTACTCAGCA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	R	-10	4	ATTGCTGAGTAAGCA	11.8
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	AATACTGACTAAGCT	11.9
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m2	D	-23	-9	AATAATGACTAATTG	11.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	D	-14	0	TTTGCTTAGTCATCA	8.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TGTGATGACTAAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	D	-6	8	GAAGCTGACTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	R	-4	10	ACTGATGAGTCAGCT	9.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	D	-12	2	GTTGCTGAGTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	R	-10	4	TTTGATGACTCAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m2	R	-6	8	ATTAATGACTAATCG	12.4
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CATGCTGACTGATAC	9.9
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m2	D	-25	-11	GATGCTGACTAAGAC	11.9
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	R	-21	-7	TCTGCTGACTGATAC	9.0
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	D	-3	11	AACGCTGACAAATCT	9.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	D	-14	0	ACCGATGACTAATCA	12.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	R	-12	2	ACTGATTAGTCATCG	9.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m2	D	-13	1	GGTGATGACTAAGCG	12.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m2	R	27	41	GATGCTGACTAAGAC	11.9
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m2	15	4	0	-45.200	15.700	60.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m2	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124520
; Job done	2025-04-03.124520
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.1
;	csystem	0
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	-9	5	CTAGCTTACTAAATG	12.7
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	2	16	AATGATGACTAATCG	11.6
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m3	R	0	14	GATGCTGACTCAGCG	9.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m3	R	-6	8	GTTGCTTAGTCATCT	9.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m3	R	-11	3	ACTGCTGACTCATCA	11.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	D	0	14	TAAGATTAGTAAGCA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTTACTAATCT	12.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m3	R	-6	8	CCTGCTGACTCAGCC	8.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	D	-10	4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	-23	-9	AAAGCTTACTAATGG	10.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTGAGTCATTT	8.0
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	9	23	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-4	10	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m3	D	-2	12	TCAGATGACTAATCA	9.8
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m3	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m3	R	-9	5	GCTGCTGACTCATCA	10.1
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-16	-2	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-5	9	TTAGCTTACTGAATG	9.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATAATGACTAATCG	7.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	D	-20	-6	CTCGCTTAGTCATCA	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGATGACTAAGCG	10.5
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-7	7	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	D	-14	0	CAAGCTGAGTAAGCA	8.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TCTGCTTACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m3	R	32	46	GTCGCTGACTCATCG	9.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	D	-6	8	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	R	7	21	ACAGCTTACTAAATA	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-12	2	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-1	13	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	-9	5	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	2	16	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m3	R	10	24	CTGGCTTACTCATCA	9.8
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ACTGCTGACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m3	D	-32	-18	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	R	-4	10	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	D	-4	10	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	R	9	23	CTCGCTTAGTCATTA	8.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-19	-5	CTAGCTTACTAAATA	13.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-8	6	AATAATGACTAATCG	7.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TATGCTTAGTAATCA	10.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ATTGATTACTAAGCA	11.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CACGATGACTCATCA	8.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTTGCTGAGTCATCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	D	-13	1	ATAGATGACTCAGCA	8.8
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	R	-11	3	GTTGCTGAGTCATCT	8.1
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGCTGACTAAGTA	12.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	1	15	AATGCTGACTAAGAT	10.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	11	25	CCTGCTTACTGAGCA	10.1
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	27	41	TAAGCTTACGAATCA	9.5
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CCAGCTTAGTAAACC	8.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	TATGCTTACTCAGCG	10.9
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m3	R	-5	9	CATGCTGACTAATAA	12.0
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m3	R	-2	12	ATAGATGACTAAGCA	10.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m3	R	-37	-23	TTAGCTGACTCAGCA	9.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	AATGATGACTAAGCG	10.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	GTTGCTGAGTCATCG	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m3	R	0	14	ATCGCTTACTCATCT	10.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	TCTGCTGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m3	D	-3	11	CCAGCTGACTAAGCC	9.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CGTGATTAGTAAGCA	7.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	R	0	14	TCTGCTTACTAATCA	12.8
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	D	-12	2	ATTGCTTACTCAGCA	11.9
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	R	-10	4	ATTGCTGAGTAAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-26	-12	ATAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	AATACTGACTAAGCT	7.6
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	R	-13	1	ATAGCTTAGTCAGTA	9.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m3	D	-34	-20	CTAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	D	-14	0	TTTGCTTAGTCATCA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TGTGATGACTAAGCA	8.1
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m3	D	-6	8	GAAGCTGACTCATCA	10.1
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TCCGCTTACTAATGA	8.9
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	D	-12	2	GTTGCTGAGTCATCA	9.0
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	R	-10	4	TTTGATGACTCAGCA	8.9
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	-6	8	ATTAATGACTAATCG	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	5	19	CTAGCTTACTAATTA	13.6
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CATGCTGACTGATAC	8.5
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m3	D	-25	-11	GATGCTGACTAAGAC	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	D	-14	0	ACCGATGACTAATCA	9.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	R	-12	2	ACTGATTAGTCATCG	8.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-24	-10	ACTGCTTACTAGGTG	8.7
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-13	1	GGTGATGACTAAGCG	7.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	R	-11	3	CTCGCTTAGTCATCA	8.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m3	R	27	41	GATGCTGACTAAGAC	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m3	15	4	0	-45.300	14.800	60.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m3	91	0
;		TOTAL          	91	0
; Host name	rsat
; Job started	2025-04-03.124521
; Job done	2025-04-03.124521
; Seconds	0.14
;	user	0.14
;	system	0.01
;	cuser	0.1
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m4	D	3	16	ATGATGACTAATCG	12.8
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GCGCTGAGTCAGCA	10.8
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m4	R	0	13	ATGCTGACTCAGCG	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m4	D	-7	6	GAGATGACTAAGCA	12.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GCGGTGAGTCAGCC	8.3
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m4	R	0	13	TGGCTGACTCACCG	9.6
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m4	D	-12	1	ATGATGAGTCAGCA	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m4	R	-11	2	CTGCTGACTCATCA	11.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m4	D	7	20	TGGATGACTCAGCC	11.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m4	R	8	21	CGGCTGAGTCATCC	9.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m4	D	4	17	CGGCTGACTCAGCA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m4	R	5	18	ATGCTGAGTCAGCC	11.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m4	D	1	14	AAGATTAGTAAGCA	8.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m4	D	-7	6	CGGCTGAGTCAGCA	11.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m4	R	-6	7	CTGCTGACTCAGCC	12.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m4	R	-8	5	ATGATGACTAAGCG	13.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m4	D	1	14	CAAATGACTCAGCA	10.1
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m4	D	10	23	ATGATGACTAATCG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m4	D	-3	10	ATGATGACTAATCG	12.8
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m4	D	-1	12	CAGATGACTAATCA	11.0
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m4	D	-10	3	GTGATGAGTCAGCA	12.6
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m4	R	-9	4	CTGCTGACTCATCA	11.9
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m4	R	-16	-3	ATGATGACTAAGCG	13.9
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m4	R	-8	5	ATAATGACTAATCG	10.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m4	R	-18	-5	ATGATGACTAAGCG	13.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m4	D	-13	0	AAGCTGAGTAAGCA	10.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m4	R	-12	1	CTGCTTACTCAGCT	9.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	D	-4	9	TGGCTGACTCAGCC	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	R	-3	10	TGGCTGAGTCAGCC	9.8
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	D	31	44	GCGATGAGTCAGCG	11.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	R	32	45	TCGCTGACTCATCG	11.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m4	R	-4	9	ATAATGACTAAGCG	11.4
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m4	D	0	13	ATGATGACTAATCG	12.8
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m4	R	-9	4	ATGATGACTAATCG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m4	D	9	22	ATGATGAGTAAGCC	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m4	R	10	23	TGGCTTACTCATCA	7.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m4	D	-6	7	GAGCTGAGTCAGCA	10.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m4	R	-5	8	CTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m4	D	-5	8	ATAATGACTAAGCG	11.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m4	D	8	21	ATAATGACTAAGCG	11.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m4	D	-7	6	ATAATGACTAATCG	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m4	D	-6	7	ATGCTTAGTAATCA	7.6
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m4	R	-5	8	TTGATTACTAAGCA	10.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	R	-42	-29	ATCCTGACTAAGAA	7.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	D	-7	6	ACGATGACTCATCA	12.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	R	-6	7	CTGATGAGTCATCG	11.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m4	D	-16	-3	TTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m4	R	-15	-2	GTGATGACTCAGCA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m4	D	-12	1	TAGATGACTCAGCA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m4	R	-11	2	TTGCTGAGTCATCT	9.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m4	R	-18	-5	ATGCTGACTAAGTA	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m4	R	1	14	ATGCTGACTAAGAT	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	D	-15	-2	ATGCTTACTCAGCG	10.8
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	R	-14	-1	CCGCTGAGTAAGCA	10.5
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	D	34	47	AGGATCAGTCAGCG	7.8
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	R	35	48	CCGCTGACTGATCC	7.6
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m4	R	-5	8	ATGCTGACTAATAA	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m4	R	-2	11	TAGATGACTAAGCA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m4	D	-38	-25	ATGCTGAGTCAGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m4	R	-37	-24	TAGCTGACTCAGCA	12.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m4	D	-15	-2	ATGATGACTAAGCG	13.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m4	D	-17	-4	TTGCTGAGTCATCG	10.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m4	R	-16	-3	GCGATGACTCAGCA	12.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GAGATGAGTAAGCG	11.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m4	D	-14	-1	CTGCTGAGTAAGCG	11.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m4	R	-13	0	CCGCTTACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m4	D	-2	11	CAGCTGACTAAGCC	10.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GTGATTAGTAAGCA	9.1
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m4	R	0	13	CTGCTTACTAATCA	8.4
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m4	D	0	13	TGGCTGACGCAGCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m4	D	-11	2	TTGCTTACTCAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m4	R	-10	3	TTGCTGAGTAAGCA	11.3
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m4	D	-14	-1	ATACTGACTAAGCT	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m4	D	-13	0	TTGCTTAGTCATCA	7.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m4	R	-12	1	GTGATGACTAAGCA	13.5
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m4	D	-5	8	AAGCTGACTCATCA	11.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m4	R	-4	9	CTGATGAGTCAGCT	11.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m4	D	-11	2	TTGCTGAGTCATCA	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m4	R	-10	3	TTGATGACTCAGCA	13.6
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m4	R	-6	7	TTAATGACTAATCG	9.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m4	D	-24	-11	ATGCTGACTAAGAC	10.8
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m4	D	-13	0	CCGATGACTAATCA	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m4	R	-12	1	CTGATTAGTCATCG	8.4
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m4	D	-12	1	GTGATGACTAAGCG	13.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m4	R	27	40	ATGCTGACTAAGAC	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m4	14	4	0	-44.600	14.500	59.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m4	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124522
; Seconds	0.12
;	user	0.12
;	system	0.04
;	cuser	0.08
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m5	D	2	18	AATGATGACTAATCGAG	14.5
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGCGCTGAGTCAGCATC	9.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	R	-2	14	GATGCTGACTCAGCGCG	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m5	D	-8	8	TGAGATGACTAAGCAAC	11.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	D	-13	3	AATGATGAGTCAGCAGT	13.7
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	R	-13	3	ACTGCTGACTCATCATT	13.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	D	6	22	CTGGATGACTCAGCCGG	9.8
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	R	6	22	CCGGCTGAGTCATCCAG	8.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	D	3	19	TCGGCTGACTCAGCATT	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	R	3	19	AATGCTGAGTCAGCCGA	12.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	D	0	16	TAAGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	R	0	16	GTTGCTTACTAATCTTA	9.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	D	-8	8	GCGGCTGAGTCAGCAGG	10.9
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	R	-8	8	CCTGCTGACTCAGCCGC	12.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATGATGACTAAGCGAG	15.4
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m5	D	0	16	ACAAATGACTCAGCAAC	10.4
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m5	D	9	25	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m5	D	-4	12	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	D	-2	14	TCAGATGACTAATCAGA	11.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGATTAGTCATCTGA	7.9
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	D	-11	5	TGTGATGAGTCAGCAGC	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	R	-11	5	GCTGCTGACTCATCACA	12.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATAATGACTAATCGAG	11.9
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	D	-14	2	CAAGCTGAGTAAGCAGA	11.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TCTGCTTACTCAGCTTG	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	-5	11	GTGGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	-5	11	CTGGCTGAGTCAGCCAC	8.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	30	46	GGCGATGAGTCAGCGAC	10.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	30	46	GTCGCTGACTCATCGCC	10.1
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m5	R	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m5	D	-1	15	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m5	R	-11	5	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m5	D	8	24	AATGATGAGTAAGCCAG	13.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	D	-7	9	GGAGCTGAGTCAGCAGT	10.6
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ACTGCTGACTCAGCTCC	11.9
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m5	D	-21	-5	AATAATGACTAATTGAG	8.2
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m5	D	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m5	D	7	23	AATAATGACTAAGCGAG	12.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m5	D	-8	8	AATAATGACTAATCGAG	11.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	D	-7	9	TATGCTTAGTAATCAAT	10.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ATTGATTACTAAGCATA	11.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-44	-28	CATCCTGACTAAGAAGG	8.4
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	D	-8	8	CACGATGACTCATCAGC	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-8	8	GCTGATGAGTCATCGTG	11.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	D	-17	-1	CTTGCTGAGTCATCACT	10.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	R	-17	-1	AGTGATGACTCAGCAAG	14.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	D	-13	3	ATAGATGACTCAGCAAC	12.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	R	-13	3	GTTGCTGAGTCATCTAT	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGCTGACTAAGTACG	12.7
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-1	15	AATGCTGACTAAGATAT	11.6
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	D	11	27	CCTGCTTACTGAGCAGT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	R	11	27	ACTGCTCAGTAAGCAGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	D	-16	0	TATGCTTACTCAGCGGA	11.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	R	-16	0	TCCGCTGAGTAAGCATA	10.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m5	R	-7	9	CATGCTGACTAATAATT	10.3
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	D	-4	12	TGTGCTTAGTCATCTAT	7.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	R	-4	12	ATAGATGACTAAGCACA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	D	-39	-23	GATGCTGAGTCAGCTAA	11.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	R	-39	-23	TTAGCTGACTCAGCATC	10.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	D	-16	0	AATGATGACTAAGCGCT	13.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	R	-16	0	AGCGCTTAGTCATCATT	7.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	D	-18	-2	GTTGCTGAGTCATCGCT	10.8
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AGCGATGACTCAGCAAC	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m5	D	-2	14	AGAGATGAGTAAGCGAT	11.1
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	D	-15	1	TCTGCTGAGTAAGCGGC	12.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	R	-15	1	GCCGCTTACTCAGCAGA	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m5	D	-3	13	CCAGCTGACTAAGCCCT	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGTGATTAGTAAGCAGA	10.4
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGCTTACTAATCACG	11.8
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m5	D	-1	15	GTGGCTGACGCAGCAGG	8.1
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	D	-12	4	ATTGCTTACTCAGCAAT	12.6
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	R	-12	4	ATTGCTGAGTAAGCAAT	13.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m5	D	-15	1	AATACTGACTAAGCTAT	11.4
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m5	D	-23	-7	AATAATGACTAATTGAG	8.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	D	-14	2	TTTGCTTAGTCATCACA	9.1
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TGTGATGACTAAGCAAA	13.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	D	-6	10	GAAGCTGACTCATCAGT	11.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	R	-6	10	ACTGATGAGTCAGCTTC	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	D	-12	4	GTTGCTGAGTCATCAAA	12.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	R	-12	4	TTTGATGACTCAGCAAC	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	R	-8	8	ATTAATGACTAATCGAG	11.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	D	3	19	ATTAATTAGTAAGCTAG	7.6
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m5	D	-25	-9	GATGCTGACTAAGACTG	11.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	D	-14	2	ACCGATGACTAATCAGT	12.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	R	-14	2	ACTGATTAGTCATCGGT	10.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m5	D	-13	3	GGTGATGACTAAGCGAG	13.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m5	R	25	41	GATGCTGACTAAGACTG	11.3
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m5	17	4	0	-51.400	16.500	67.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m5	89	0
;		TOTAL          	89	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124523
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0.07
;	csystem	0.04
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m1	D	3	17	ATGATGACTAATCGA	15.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GCGCTGAGTCAGCAT	8.4
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	R	-1	13	ATGCTGACTCAGCGC	12.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m1	D	-7	7	GAGATGACTAAGCAA	13.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	D	-12	2	ATGATGAGTCAGCAG	12.3
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	R	-12	2	CTGCTGACTCATCAT	10.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	D	7	21	TGGATGACTCAGCCG	10.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	R	7	21	CGGCTGAGTCATCCA	7.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	D	4	18	CGGCTGACTCAGCAT	9.8
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	R	4	18	ATGCTGAGTCAGCCG	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	D	1	15	AAGATTAGTAAGCAA	10.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	R	1	15	TTGCTTACTAATCTT	8.0
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	D	-7	7	CGGCTGAGTCAGCAG	8.6
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGCTGACTCAGCCG	11.4
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATGATGACTAAGCGA	16.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m1	D	1	15	CAAATGACTCAGCAA	11.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m1	D	10	24	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m1	D	-3	11	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m1	D	-1	13	CAGATGACTAATCAG	11.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m1	D	-39	-25	AAGATTAGTAAGTGA	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	D	-10	4	GTGATGAGTCAGCAG	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	R	-10	4	CTGCTGACTCATCAC	10.8
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATAATGACTAATCGA	13.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	D	-13	1	AAGCTGAGTAAGCAG	10.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGCTTACTCAGCTT	8.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	-4	10	TGGCTGACTCAGCCA	9.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	-4	10	TGGCTGAGTCAGCCA	8.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	31	45	GCGATGAGTCAGCGA	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	31	45	TCGCTGACTCATCGC	9.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m1	R	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m1	D	0	14	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m1	R	-10	4	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m1	D	9	23	ATGATGAGTAAGCCA	13.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	D	-6	8	GAGCTGAGTCAGCAG	9.0
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	R	-6	8	CTGCTGACTCAGCTC	10.3
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m1	D	-20	-6	ATAATGACTAATTGA	10.6
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m1	D	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m1	D	8	22	ATAATGACTAAGCGA	14.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ATAATGACTAATCGA	13.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	D	-6	8	ATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	R	-6	8	TTGATTACTAAGCAT	11.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ACGATGACTCATCAG	11.5
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGATGAGTCATCGT	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	D	-16	-2	TTGCTGAGTCATCAC	9.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	R	-16	-2	GTGATGACTCAGCAA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	D	-12	2	TAGATGACTCAGCAA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	R	-12	2	TTGCTGAGTCATCTA	9.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	0	14	ATGCTGACTAAGATA	11.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGCTTACTCAGCGG	10.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	R	-15	-1	CCGCTGAGTAAGCAT	9.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	TAATTGACTAAGCAG	8.2
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-6	8	ATGCTGACTAATAAT	10.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m1	R	-3	11	TAGATGACTAAGCAC	12.4
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	D	-38	-24	ATGCTGAGTCAGCTA	11.0
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	R	-38	-24	TAGCTGACTCAGCAT	10.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGATGACTAAGCGC	14.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	D	-17	-3	TTGCTGAGTCATCGC	9.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	GCGATGACTCAGCAA	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GAGATGAGTAAGCGA	12.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	D	-14	0	CTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	R	-14	0	CCGCTTACTCAGCAG	8.0
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m1	D	-2	12	CAGCTGACTAAGCCC	10.3
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GTGATTAGTAAGCAG	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	R	-1	13	CTGCTTACTAATCAC	9.4
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTTACTCAGCAA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGCTGAGTAAGCAA	12.4
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m1	D	-14	0	ATACTGACTAAGCTA	12.3
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m1	D	-22	-8	ATAATGACTAATTGA	10.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m1	R	-13	1	GTGATGACTAAGCAA	14.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	D	-5	9	AAGCTGACTCATCAG	10.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	R	-5	9	CTGATGAGTCAGCTT	10.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTGAGTCATCAA	10.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGATGACTCAGCAA	13.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	R	-7	7	TTAATGACTAATCGA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	D	4	18	TTAATTAGTAAGCTA	8.3
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m1	D	-24	-10	ATGCTGACTAAGACT	10.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	D	-13	1	CCGATGACTAATCAG	11.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGATTAGTCATCGG	8.6
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m1	D	-12	2	GTGATGACTAAGCGA	15.4
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m1	R	26	40	ATGCTGACTAAGACT	10.4
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m1	15	4	0	-48.500	16.000	64.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m1	83	0
;		TOTAL          	83	0
; Host name	rsat
; Job started	2025-04-03.124523
; Job done	2025-04-03.124523
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	D	2	17	AATGATGACTAATCGA	13.2
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	R	3	18	CTCGATTAGTCATCAT	8.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGCTGAGTCAGCAT	11.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	R	-1	14	GATGCTGACTCAGCGC	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	D	-8	7	TGAGATGACTAAGCAA	10.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GTTGCTTAGTCATCTC	9.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGGTGAGTCAGCCA	8.1
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	R	-1	14	CTGGCTGACTCACCGC	8.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	D	-13	2	AATGATGAGTCAGCAG	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	R	-12	3	ACTGCTGACTCATCAT	13.5
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	D	6	21	CTGGATGACTCAGCCG	11.4
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	R	7	22	CCGGCTGAGTCATCCA	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	D	3	18	TCGGCTGACTCAGCAT	12.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	R	4	19	AATGCTGAGTCAGCCG	13.2
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	D	0	15	TAAGATTAGTAAGCAA	8.1
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTTACTAATCTT	9.5
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	D	-8	7	GCGGCTGAGTCAGCAG	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	R	-7	8	CCTGCTGACTCAGCCG	13.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	D	-10	5	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATGATGACTAAGCGA	13.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	D	0	15	ACAAATGACTCAGCAA	9.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTGAGTCATTTG	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	D	9	24	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	R	10	25	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	D	-4	11	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	R	-3	12	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	D	-2	13	TCAGATGACTAATCAG	9.9
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGATTAGTCATCTG	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	D	-11	4	TGTGATGAGTCAGCAG	11.7
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	R	-10	5	GCTGCTGACTCATCAC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATAATGACTAATCGA	9.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	D	-20	-5	CTCGCTTAGTCATCAT	8.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	D	-14	1	CAAGCTGAGTAAGCAG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TCTGCTTACTCAGCTT	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	-5	10	GTGGCTGACTCAGCCA	12.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	-4	11	CTGGCTGAGTCAGCCA	11.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	30	45	GGCGATGAGTCAGCGA	11.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	31	46	GTCGCTGACTCATCGC	12.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m2	R	-5	10	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	D	-1	14	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	R	0	15	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	D	-11	4	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	R	-10	5	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	D	8	23	AATGATGAGTAAGCCA	12.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	R	9	24	CTGGCTTACTCATCAT	8.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	D	-7	8	GGAGCTGAGTCAGCAG	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ACTGCTGACTCAGCTC	13.1
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m2	D	-6	9	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m2	D	7	22	AATAATGACTAAGCGA	10.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m2	D	-8	7	AATAATGACTAATCGA	9.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	D	-7	8	TATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ATTGATTACTAAGCAT	10.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	D	-8	7	CACGATGACTCATCAG	11.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GCTGATGAGTCATCGT	12.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CTTGCTGAGTCATCAC	12.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	R	-16	-1	AGTGATGACTCAGCAA	13.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	D	-13	2	ATAGATGACTCAGCAA	12.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	R	-12	3	GTTGCTGAGTCATCTA	12.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	0	15	AATGCTGACTAAGATA	11.0
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m2	D	11	26	CCTGCTTACTGAGCAG	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	TATGCTTACTCAGCGG	11.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	-15	0	TCCGCTGAGTAAGCAT	10.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	34	49	TCCGCTGACTGATCCT	9.1
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m2	R	-6	9	CATGCTGACTAATAAT	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	D	-4	11	TGTGCTTAGTCATCTA	8.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	R	-3	12	ATAGATGACTAAGCAC	11.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	D	-39	-24	GATGCTGAGTCAGCTA	12.7
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	R	-38	-23	TTAGCTGACTCAGCAT	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	AATGATGACTAAGCGC	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	R	-15	0	AGCGCTTAGTCATCAT	8.3
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	GTTGCTGAGTCATCGC	12.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AGCGATGACTCAGCAA	12.3
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	D	-2	13	AGAGATGAGTAAGCGA	10.4
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	R	-1	14	ATCGCTTACTCATCTC	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	D	-15	0	TCTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	R	-14	1	GCCGCTTACTCAGCAG	10.5
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m2	D	-3	12	CCAGCTGACTAAGCCC	10.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGTGATTAGTAAGCAG	9.5
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGCTTACTAATCAC	10.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	D	-1	14	GTGGCTGACGCAGCAG	8.7
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	R	0	15	CCTGCTGCGTCAGCCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	D	-12	3	ATTGCTTACTCAGCAA	12.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	R	-11	4	ATTGCTGAGTAAGCAA	13.2
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m2	D	-15	0	AATACTGACTAAGCTA	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	D	-14	1	TTTGCTTAGTCATCAC	9.8
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TGTGATGACTAAGCAA	12.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	D	-6	9	GAAGCTGACTCATCAG	11.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	R	-5	10	ACTGATGAGTCAGCTT	11.8
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m2	R	27	42	GCCGCTGACAAAGCCC	7.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	D	-12	3	GTTGCTGAGTCATCAA	13.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	R	-11	4	TTTGATGACTCAGCAA	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m2	R	-7	8	ATTAATGACTAATCGA	9.5
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CATGCTGACTGATACT	8.2
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m2	D	-25	-10	GATGCTGACTAAGACT	10.8
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_7nt_mkv2_m2	R	-22	-7	TCTGCTGACTGATACG	8.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	D	-14	1	ACCGATGACTAATCAG	11.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	R	-13	2	ACTGATTAGTCATCGG	10.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	D	-13	2	GGTGATGACTAAGCGA	13.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	R	-12	3	CTCGCTTAGTCATCAC	8.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m2	R	26	41	GATGCTGACTAAGACT	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m2	16	4	0	-50.100	15.400	65.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m2	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-04-03.124524
; Job done	2025-04-03.124524
; Seconds	0.14
;	user	0.14
;	system	0.02
;	cuser	0.1
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	-9	6	TCATTTAGTAAGCTAG	12.8
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	2	17	TCGATTAGTCATCATT	10.9
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	D	3	18	ATGATGACTAATCGAG	9.1
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GCGCTGAGTCAGCATC	8.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTGCTTAGTCATCTCA	7.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	D	-7	8	GAGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m3	D	-12	3	ATGATGAGTCAGCAGT	11.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m3	R	3	18	ATGCTGAGTCAGCCGA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	R	0	15	TTGCTTACTAATCTTA	8.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	D	1	16	AAGATTAGTAAGCAAC	12.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m3	D	-7	8	CGGCTGAGTCAGCAGG	8.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	2	17	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m3	D	-24	-9	GCCATTAGTAAGCTTT	9.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	-2	13	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	9	24	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	D	10	25	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	D	-3	12	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m3	R	-2	13	CTGATTAGTCATCTGA	8.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	R	-40	-25	TCACTTACTAATCTTA	7.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	D	-39	-24	AAGATTAGTAAGTGAT	9.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m3	D	-10	5	GTGATGAGTCAGCAGC	10.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-17	-2	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-6	9	TCATTCAGTAAGCTAA	10.2
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATAATGACTAATCGAG	8.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGATTAGTCATTATT	7.7
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	2	17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	R	-20	-5	ATGATGACTAAGCGAG	11.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	TCGCTTAGTCATCATT	9.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-8	7	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGCTTACTCAGCTTG	8.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	D	-13	2	AAGCTGAGTAAGCAGA	9.3
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m3	D	31	46	GCGATGAGTCAGCGAC	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	R	-6	9	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	D	6	21	TTATTTAGTAAGCTGT	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-1	14	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	D	0	15	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	R	-11	4	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	-10	5	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	1	16	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m3	D	9	24	ATGATGAGTAAGCCAG	11.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m3	D	-6	9	GAGCTGAGTCAGCAGT	8.7
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m3	R	-32	-17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	D	-5	10	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	D	8	23	ATAATGACTAAGCGAG	10.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-19	-4	TTATTTAGTAAGCTAG	13.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TCGATTAGTCATTATT	7.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	D	-7	8	ATAATGACTAATCGAG	8.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	R	-7	8	TTGATTACTAAGCATA	11.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATGCTTAGTAATCAAT	11.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m3	R	-8	7	CTGATGAGTCATCGTG	8.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	GTGATGACTCAGCAAG	10.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	D	-16	-1	TTGCTGAGTCATCACT	7.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TTGCTGAGTCATCTAT	9.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	D	-12	3	TAGATGACTCAGCAAC	9.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	GTACTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	0	15	TATCTTAGTCAGCATT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	11	26	CTGCTCAGTAAGCAGG	9.3
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	27	42	ATGATTCGTAAGCTTA	10.2
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TGGTTTACTAAGCTGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	CCGCTGAGTAAGCATA	10.1
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGCTTACTCAGCGGA	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	TAATTGACTAAGCAGC	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TAGATGACTAAGCACA	8.7
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	D	-3	12	GTGCTTAGTCATCTAT	9.5
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m3	D	-38	-23	ATGCTGAGTCAGCTAA	9.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	GCGCTTAGTCATCATT	8.7
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGATGACTAAGCGCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	GCGATGACTCAGCAAC	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GAGATGAGTAAGCGAT	11.4
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	R	-15	0	CCGCTTACTCAGCAGA	7.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	D	-14	1	CTGCTGAGTAAGCGGC	8.7
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m3	R	-3	12	GGGCTTAGTCAGCTGG	9.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GTGATTAGTAAGCAGA	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGCTGAGTAAGCAAT	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTTACTCAGCAAT	10.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-26	-11	GTATTTAGTAAGCTAT	12.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TAGCTTAGTCAGTATT	7.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	D	-14	1	ATACTGACTAAGCTAT	9.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m3	R	-34	-19	TTATTTAGTAAGCTAG	13.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	R	-14	1	GTGATGACTAAGCAAA	10.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	D	-13	2	TTGCTTAGTCATCACA	8.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m3	R	-6	9	CTGATGAGTCAGCTTC	9.5
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m3	R	-7	8	CTCATTAGTAAGCGGA	8.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGATGACTCAGCAAC	10.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTGAGTCATCAAA	9.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTAATGACTAATCGAG	9.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	-7	8	TCGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	4	19	TTAATTAGTAAGCTAG	14.0
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	AGTATCAGTCAGCATG	7.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m3	R	-25	-10	AGTCTTAGTCAGCATC	7.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGATTAGTCATCGGT	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	D	-13	2	CCGATGACTAATCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-24	-9	TCACCTAGTAAGCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TCGCTTAGTCATCACC	7.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	D	-12	3	GTGATGACTAAGCGAG	11.1
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m3	D	26	41	AGTCTTAGTCAGCATC	7.6
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m3	16	4	0	-42.200	15.300	57.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m3	105	0
;		TOTAL          	105	0
; Host name	rsat
; Job started	2025-04-03.124525
; Job done	2025-04-03.124525
; Seconds	0.18
;	user	0.18
;	system	0
;	cuser	0.08
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:103141-103241(.)	site	oligos_7nt_mkv2_m4	D	-46	-36	TCCTATCTAGA	9.3
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m4	D	-23	-13	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m4	R	16	26	AACTATGTAGA	7.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m4	R	19	29	GCCTATCTATA	10.3
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m4	D	-16	-6	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m4	D	-29	-19	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m4	R	-3	7	ATCTATCTAAA	10.0
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m4	D	10	20	TCCTATCTAGA	9.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m4	R	16	26	GCCTATCTATA	10.3
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m4	D	-25	-15	AACTATGTAGA	7.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m4	R	21	31	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m4	R	23	33	GCCTATCTATA	10.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m4	D	-26	-16	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m4	R	20	30	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m4	R	-35	-25	ACCTATCGATA	8.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m4	D	-16	-6	GCCTATCTATA	10.3
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m4	R	-2	8	TCCTATCTAGA	9.3
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m4	D	11	21	ATCCATCTAAA	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m4	D	-33	-23	GCCTATCTAAA	10.5
ChrVIII_A_nidulans_FGSC_A4:2967195-2967295(.)	site	oligos_7nt_mkv2_m4	R	-18	-8	GACTACCTATA	7.9
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m4	R	-16	-6	TCCTATCTAGA	9.3
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m4	D	-3	7	ATCCATCTAAA	8.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m4	D	-48	-38	GCCTATCTAAA	10.5
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m4	R	-22	-12	ATCCATCTAAA	8.0
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m4	D	-9	1	TCCTATCTAGA	9.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m4	R	23	33	GCCTATCTAAA	10.5
ChrVI_A_nidulans_FGSC_A4:1031852-1031952(.)	site	oligos_7nt_mkv2_m4	R	-49	-39	GACTACCTATA	7.9
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m4	D	-33	-23	AACTATCTAAG	9.0
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m4	D	-24	-14	AACTATGTAGA	7.5
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m4	R	-50	-40	AACTATCTAAG	9.0
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m4	D	-8	2	AACTATGTAGA	7.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m4	D	-38	-28	AACTATCTAAG	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m4	11	4	0	-31.100	11.100	42.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m4	32	0
;		TOTAL          	32	0
; Host name	rsat
; Job started	2025-04-03.124526
; Job done	2025-04-03.124526
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-20	-9	TATCTAAATAAC	11.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-4	7	TTACTAAATGAT	10.2
ChrIII_A_nidulans_FGSC_A4:2487401-2487501(.)	site	oligos_7nt_mkv2_m5	R	19	30	GTTCTAAATAAG	8.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m5	R	33	44	TATCTAAATACA	8.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-41	-30	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-31	-20	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-4	7	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	-13	-2	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	3	14	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-26	-15	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-10	1	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m5	R	-7	4	TATCTAAATATA	7.6
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	21	32	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	31	42	AACCTAAATAAC	10.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	17	28	TATCTAAACAAC	9.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m5	R	-9	2	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m5	R	5	16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-23	-12	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-7	4	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	0	11	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	16	27	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-43	-32	TCTCTAAACAAC	8.2
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-27	-16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m5	D	-12	-1	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m5	D	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m5	D	14	25	CATCTAAATACG	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-30	-19	TATCTAAACAAC	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	TTACTAAATAAT	11.8
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m5	D	0	11	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m5	D	-21	-10	TTACTAAATACT	10.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-45	-34	TATCTAAACAAC	9.2
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-29	-18	TTACTAAATAAT	11.8
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m5	R	-26	-15	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	3	14	TTACTAATTAAT	8.1
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	19	30	TATCTAAACAAC	9.2
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-15	-4	ACCCAAAATAAC	7.8
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-5	6	AACCTAAATAAC	10.8
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m5	D	-11	0	AATCTAAATACA	8.2
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	22	33	ACCCAAAATAAC	7.8
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	32	43	AACCTAAATAAC	10.8
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m5	R	38	49	ACCCAAAATAAC	7.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m5	12	4	0	-31.200	12.000	43.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m5	44	0
;		TOTAL          	44	0
; Host name	rsat
; Job started	2025-04-03.124527
; Job done	2025-04-03.124527
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0.09
;	csystem	0.03
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	R	2	16	CGATTAGTCATCATT	12.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	D	4	18	TGATGACTAATCGAG	8.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTGACTCAGCGCG	11.0
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGCTGAGTCAGCATC	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTTAGTCATCTCA	9.0
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	D	-6	8	AGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGGTGAGTCAGCCAG	8.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGACTCATCATT	13.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGAGTCAGCAGT	14.0
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	R	6	20	GGCTGAGTCATCCAG	10.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	D	8	22	GGATGACTCAGCCGG	10.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	R	3	17	TGCTGAGTCAGCCGA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	D	5	19	GGCTGACTCAGCATT	13.0
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m1	D	2	16	AGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTGACTCAGCCGC	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	D	-6	8	GGCTGAGTCAGCAGG	13.2
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	R	-10	4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGCTTAGTCATCATT	13.0
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	R	0	14	TGCTGAGTCATTTGT	7.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	D	2	16	AAATGACTCAGCAAC	8.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	R	9	23	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	D	11	25	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	R	-4	10	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGATTAGTCATCTGA	9.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGACTAATCAGA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGCTGACTCATCACA	11.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	D	-9	5	TGATGAGTCAGCAGC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGATTAGTCATTATT	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	R	-20	-6	TGATGACTAAGCGAG	9.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGCTTACTCAGCTTG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	D	-12	2	AGCTGAGTAAGCAGA	10.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	-5	9	GGCTGAGTCAGCCAC	12.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	-3	11	GGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	30	44	CGCTGACTCATCGCC	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	32	46	CGATGAGTCAGCGAC	12.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m1	D	-4	10	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	R	-1	13	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	D	1	15	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	D	-9	5	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	R	8	22	GGCTTACTCATCATT	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	D	10	24	TGATGAGTAAGCCAG	9.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGCTGACTCAGCTCC	10.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	D	-5	9	AGCTGAGTCAGCAGT	13.3
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m1	R	-6	8	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m1	R	7	21	CGCTTAGTCATTATT	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m1	R	-8	6	CGATTAGTCATTATT	8.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGATTACTAAGCATA	9.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TGCTTAGTAATCAAT	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-42	-28	TTCTTAGTCAGGATG	7.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGATGAGTCATCGTG	12.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATGACTCATCAGC	11.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	TGATGACTCAGCAAG	12.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	D	-15	-1	TGCTGAGTCATCACT	13.0
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGAGTCATCTAT	11.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	D	-11	3	AGATGACTCAGCAAC	11.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	TACTTAGTCAGCATT	11.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	1	15	ATCTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m1	R	11	25	TGCTCAGTAAGCAGG	9.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTGAGTAAGCATA	11.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGCTTACTCAGCGGA	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	35	49	GGATCAGTCAGCGGA	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	R	-4	10	AGATGACTAAGCACA	8.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGCTTAGTCATCTAT	10.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	R	-39	-25	AGCTGACTCAGCATC	12.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	D	-37	-23	TGCTGAGTCAGCTAA	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTTAGTCATCATT	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGATGACTAAGCGCT	8.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	CGATGACTCAGCAAC	12.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	TGCTGAGTCATCGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	R	-2	12	CGCTTACTCATCTCT	8.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGAGTAAGCGAT	9.3
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	CGCTTACTCAGCAGA	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	D	-13	1	TGCTGAGTAAGCGGC	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	R	-3	11	GGCTTAGTCAGCTGG	10.3
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	D	-1	13	AGCTGACTAAGCCCT	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTTACTAATCACG	9.2
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	D	0	14	TGATTAGTAAGCAGA	10.2
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	R	-1	13	TGCTGCGTCAGCCAC	9.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	D	1	15	GGCTGACGCAGCAGG	9.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGCTGAGTAAGCAAT	12.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTTACTCAGCAAT	12.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	AGCTTAGTCAGTATT	9.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATGACTAAGCAAA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	D	-12	2	TGCTTAGTCATCACA	11.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	R	-6	8	TGATGAGTCAGCTTC	11.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	D	-4	10	AGCTGACTCATCAGT	11.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGATGACTCAGCAAC	12.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTGAGTCATCAAA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	GTATCAGTCAGCATG	9.1
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m1	R	-25	-11	GTCTTAGTCAGCATC	11.2
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m1	D	-21	-7	GTATCAGTCAGCAGA	8.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATTAGTCATCGGT	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	D	-12	2	CGATGACTAATCAGT	10.0
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	R	-13	1	CGCTTAGTCATCACC	11.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGACTAAGCGAG	9.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m1	D	27	41	GTCTTAGTCAGCATC	11.2
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m1	15	4	0	-45.800	15.400	61.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m1	103	0
;		TOTAL          	103	0
; Host name	rsat
; Job started	2025-04-03.124519
; Job done	2025-04-03.124519
; Seconds	0.14
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m2	D	2	16	AATGATGACTAATCG	15.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m2	R	0	14	GATGCTGACTCAGCG	13.3
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	D	-8	6	TGAGATGACTAAGCA	8.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GTTGCTTAGTCATCT	8.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	D	-13	1	AATGATGAGTCAGCA	10.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACTGCTGACTCATCA	13.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	D	3	17	TCGGCTGACTCAGCA	8.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	R	5	19	AATGCTGAGTCAGCC	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTTACTAATCT	11.2
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m2	R	-6	8	CCTGCTGACTCAGCC	10.9
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATGATGACTAAGCG	14.5
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	-23	-9	AAAGCTTACTAATGG	8.2
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	D	0	14	ACAAATGACTCAGCA	7.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTGAGTCATTT	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m2	D	9	23	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m2	D	-4	10	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m2	D	-2	12	TCAGATGACTAATCA	10.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m2	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	D	-11	3	TGTGATGAGTCAGCA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	R	-9	5	GCTGCTGACTCATCA	12.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATAATGACTAATCG	13.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	D	-14	0	CAAGCTGAGTAAGCA	9.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TCTGCTTACTCAGCT	8.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	D	-5	9	GTGGCTGACTCAGCC	7.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	R	32	46	GTCGCTGACTCATCG	12.0
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m2	R	-4	10	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m2	D	-1	13	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m2	R	-9	5	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m2	D	8	22	AATGATGAGTAAGCC	11.3
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ACTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m2	D	-21	-7	AATAATGACTAATTG	11.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m2	D	-6	8	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m2	D	7	21	AATAATGACTAAGCG	12.3
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m2	D	-8	6	AATAATGACTAATCG	13.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	D	-7	7	TATGCTTAGTAATCA	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ATTGATTACTAAGCA	10.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-42	-28	CATCCTGACTAAGAA	8.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	D	-8	6	CACGATGACTCATCA	11.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GCTGATGAGTCATCG	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CTTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	R	-15	-1	AGTGATGACTCAGCA	10.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	D	-13	1	ATAGATGACTCAGCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	R	-11	3	GTTGCTGAGTCATCT	10.5
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGCTGACTAAGTA	12.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	1	15	AATGCTGACTAAGAT	12.4
ChrI_A_nidulans_FGSC_A4:2695806-2695906(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACAAATGACTAATAT	7.9
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m2	D	11	25	CCTGCTTACTGAGCA	8.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	TATGCTTACTCAGCG	10.7
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	-14	0	TCCGCTGAGTAAGCA	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	35	49	TCCGCTGACTGATCC	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m2	R	-5	9	CATGCTGACTAATAA	12.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m2	R	-2	12	ATAGATGACTAAGCA	10.8
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	D	-39	-25	GATGCTGAGTCAGCT	10.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	R	-37	-23	TTAGCTGACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	AATGATGACTAAGCG	14.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	D	-18	-4	GTTGCTGAGTCATCG	11.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AGCGATGACTCAGCA	8.8
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	D	-2	12	AGAGATGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	R	0	14	ATCGCTTACTCATCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	TCTGCTGAGTAAGCG	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m2	D	-3	11	CCAGCTGACTAAGCC	9.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	D	-2	12	CGTGATTAGTAAGCA	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	R	0	14	TCTGCTTACTAATCA	11.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	D	-12	2	ATTGCTTACTCAGCA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	R	-10	4	ATTGCTGAGTAAGCA	11.8
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	AATACTGACTAAGCT	11.9
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m2	D	-23	-9	AATAATGACTAATTG	11.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	D	-14	0	TTTGCTTAGTCATCA	8.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TGTGATGACTAAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	D	-6	8	GAAGCTGACTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	R	-4	10	ACTGATGAGTCAGCT	9.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	D	-12	2	GTTGCTGAGTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	R	-10	4	TTTGATGACTCAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m2	R	-6	8	ATTAATGACTAATCG	12.4
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CATGCTGACTGATAC	9.9
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m2	D	-25	-11	GATGCTGACTAAGAC	11.9
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	R	-21	-7	TCTGCTGACTGATAC	9.0
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	D	-3	11	AACGCTGACAAATCT	9.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	D	-14	0	ACCGATGACTAATCA	12.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	R	-12	2	ACTGATTAGTCATCG	9.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m2	D	-13	1	GGTGATGACTAAGCG	12.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m2	R	27	41	GATGCTGACTAAGAC	11.9
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m2	15	4	0	-45.200	15.700	60.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m2	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124520
; Job done	2025-04-03.124520
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.1
;	csystem	0
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	-9	5	CTAGCTTACTAAATG	12.7
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	2	16	AATGATGACTAATCG	11.6
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m3	R	0	14	GATGCTGACTCAGCG	9.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m3	R	-6	8	GTTGCTTAGTCATCT	9.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m3	R	-11	3	ACTGCTGACTCATCA	11.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	D	0	14	TAAGATTAGTAAGCA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTTACTAATCT	12.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m3	R	-6	8	CCTGCTGACTCAGCC	8.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	D	-10	4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	-23	-9	AAAGCTTACTAATGG	10.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTGAGTCATTT	8.0
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	9	23	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-4	10	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m3	D	-2	12	TCAGATGACTAATCA	9.8
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m3	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m3	R	-9	5	GCTGCTGACTCATCA	10.1
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-16	-2	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-5	9	TTAGCTTACTGAATG	9.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATAATGACTAATCG	7.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	D	-20	-6	CTCGCTTAGTCATCA	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGATGACTAAGCG	10.5
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-7	7	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	D	-14	0	CAAGCTGAGTAAGCA	8.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TCTGCTTACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m3	R	32	46	GTCGCTGACTCATCG	9.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	D	-6	8	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	R	7	21	ACAGCTTACTAAATA	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-12	2	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-1	13	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	-9	5	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	2	16	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m3	R	10	24	CTGGCTTACTCATCA	9.8
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ACTGCTGACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m3	D	-32	-18	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	R	-4	10	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	D	-4	10	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	R	9	23	CTCGCTTAGTCATTA	8.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-19	-5	CTAGCTTACTAAATA	13.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-8	6	AATAATGACTAATCG	7.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TATGCTTAGTAATCA	10.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ATTGATTACTAAGCA	11.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CACGATGACTCATCA	8.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTTGCTGAGTCATCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	D	-13	1	ATAGATGACTCAGCA	8.8
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	R	-11	3	GTTGCTGAGTCATCT	8.1
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGCTGACTAAGTA	12.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	1	15	AATGCTGACTAAGAT	10.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	11	25	CCTGCTTACTGAGCA	10.1
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	27	41	TAAGCTTACGAATCA	9.5
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CCAGCTTAGTAAACC	8.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	TATGCTTACTCAGCG	10.9
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m3	R	-5	9	CATGCTGACTAATAA	12.0
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m3	R	-2	12	ATAGATGACTAAGCA	10.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m3	R	-37	-23	TTAGCTGACTCAGCA	9.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	AATGATGACTAAGCG	10.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	GTTGCTGAGTCATCG	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m3	R	0	14	ATCGCTTACTCATCT	10.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	TCTGCTGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m3	D	-3	11	CCAGCTGACTAAGCC	9.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CGTGATTAGTAAGCA	7.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	R	0	14	TCTGCTTACTAATCA	12.8
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	D	-12	2	ATTGCTTACTCAGCA	11.9
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	R	-10	4	ATTGCTGAGTAAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-26	-12	ATAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	AATACTGACTAAGCT	7.6
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	R	-13	1	ATAGCTTAGTCAGTA	9.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m3	D	-34	-20	CTAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	D	-14	0	TTTGCTTAGTCATCA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TGTGATGACTAAGCA	8.1
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m3	D	-6	8	GAAGCTGACTCATCA	10.1
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TCCGCTTACTAATGA	8.9
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	D	-12	2	GTTGCTGAGTCATCA	9.0
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	R	-10	4	TTTGATGACTCAGCA	8.9
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	-6	8	ATTAATGACTAATCG	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	5	19	CTAGCTTACTAATTA	13.6
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CATGCTGACTGATAC	8.5
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m3	D	-25	-11	GATGCTGACTAAGAC	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	D	-14	0	ACCGATGACTAATCA	9.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	R	-12	2	ACTGATTAGTCATCG	8.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-24	-10	ACTGCTTACTAGGTG	8.7
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-13	1	GGTGATGACTAAGCG	7.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	R	-11	3	CTCGCTTAGTCATCA	8.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m3	R	27	41	GATGCTGACTAAGAC	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m3	15	4	0	-45.300	14.800	60.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m3	91	0
;		TOTAL          	91	0
; Host name	rsat
; Job started	2025-04-03.124521
; Job done	2025-04-03.124521
; Seconds	0.14
;	user	0.14
;	system	0.01
;	cuser	0.1
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m4	D	3	16	ATGATGACTAATCG	12.8
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GCGCTGAGTCAGCA	10.8
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m4	R	0	13	ATGCTGACTCAGCG	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m4	D	-7	6	GAGATGACTAAGCA	12.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GCGGTGAGTCAGCC	8.3
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m4	R	0	13	TGGCTGACTCACCG	9.6
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m4	D	-12	1	ATGATGAGTCAGCA	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m4	R	-11	2	CTGCTGACTCATCA	11.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m4	D	7	20	TGGATGACTCAGCC	11.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m4	R	8	21	CGGCTGAGTCATCC	9.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m4	D	4	17	CGGCTGACTCAGCA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m4	R	5	18	ATGCTGAGTCAGCC	11.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m4	D	1	14	AAGATTAGTAAGCA	8.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m4	D	-7	6	CGGCTGAGTCAGCA	11.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m4	R	-6	7	CTGCTGACTCAGCC	12.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m4	R	-8	5	ATGATGACTAAGCG	13.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m4	D	1	14	CAAATGACTCAGCA	10.1
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m4	D	10	23	ATGATGACTAATCG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m4	D	-3	10	ATGATGACTAATCG	12.8
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m4	D	-1	12	CAGATGACTAATCA	11.0
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m4	D	-10	3	GTGATGAGTCAGCA	12.6
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m4	R	-9	4	CTGCTGACTCATCA	11.9
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m4	R	-16	-3	ATGATGACTAAGCG	13.9
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m4	R	-8	5	ATAATGACTAATCG	10.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m4	R	-18	-5	ATGATGACTAAGCG	13.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m4	D	-13	0	AAGCTGAGTAAGCA	10.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m4	R	-12	1	CTGCTTACTCAGCT	9.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	D	-4	9	TGGCTGACTCAGCC	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	R	-3	10	TGGCTGAGTCAGCC	9.8
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	D	31	44	GCGATGAGTCAGCG	11.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	R	32	45	TCGCTGACTCATCG	11.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m4	R	-4	9	ATAATGACTAAGCG	11.4
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m4	D	0	13	ATGATGACTAATCG	12.8
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m4	R	-9	4	ATGATGACTAATCG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m4	D	9	22	ATGATGAGTAAGCC	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m4	R	10	23	TGGCTTACTCATCA	7.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m4	D	-6	7	GAGCTGAGTCAGCA	10.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m4	R	-5	8	CTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m4	D	-5	8	ATAATGACTAAGCG	11.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m4	D	8	21	ATAATGACTAAGCG	11.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m4	D	-7	6	ATAATGACTAATCG	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m4	D	-6	7	ATGCTTAGTAATCA	7.6
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m4	R	-5	8	TTGATTACTAAGCA	10.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	R	-42	-29	ATCCTGACTAAGAA	7.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	D	-7	6	ACGATGACTCATCA	12.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	R	-6	7	CTGATGAGTCATCG	11.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m4	D	-16	-3	TTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m4	R	-15	-2	GTGATGACTCAGCA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m4	D	-12	1	TAGATGACTCAGCA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m4	R	-11	2	TTGCTGAGTCATCT	9.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m4	R	-18	-5	ATGCTGACTAAGTA	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m4	R	1	14	ATGCTGACTAAGAT	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	D	-15	-2	ATGCTTACTCAGCG	10.8
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	R	-14	-1	CCGCTGAGTAAGCA	10.5
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	D	34	47	AGGATCAGTCAGCG	7.8
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	R	35	48	CCGCTGACTGATCC	7.6
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m4	R	-5	8	ATGCTGACTAATAA	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m4	R	-2	11	TAGATGACTAAGCA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m4	D	-38	-25	ATGCTGAGTCAGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m4	R	-37	-24	TAGCTGACTCAGCA	12.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m4	D	-15	-2	ATGATGACTAAGCG	13.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m4	D	-17	-4	TTGCTGAGTCATCG	10.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m4	R	-16	-3	GCGATGACTCAGCA	12.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GAGATGAGTAAGCG	11.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m4	D	-14	-1	CTGCTGAGTAAGCG	11.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m4	R	-13	0	CCGCTTACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m4	D	-2	11	CAGCTGACTAAGCC	10.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GTGATTAGTAAGCA	9.1
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m4	R	0	13	CTGCTTACTAATCA	8.4
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m4	D	0	13	TGGCTGACGCAGCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m4	D	-11	2	TTGCTTACTCAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m4	R	-10	3	TTGCTGAGTAAGCA	11.3
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m4	D	-14	-1	ATACTGACTAAGCT	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m4	D	-13	0	TTGCTTAGTCATCA	7.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m4	R	-12	1	GTGATGACTAAGCA	13.5
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m4	D	-5	8	AAGCTGACTCATCA	11.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m4	R	-4	9	CTGATGAGTCAGCT	11.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m4	D	-11	2	TTGCTGAGTCATCA	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m4	R	-10	3	TTGATGACTCAGCA	13.6
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m4	R	-6	7	TTAATGACTAATCG	9.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m4	D	-24	-11	ATGCTGACTAAGAC	10.8
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m4	D	-13	0	CCGATGACTAATCA	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m4	R	-12	1	CTGATTAGTCATCG	8.4
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m4	D	-12	1	GTGATGACTAAGCG	13.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m4	R	27	40	ATGCTGACTAAGAC	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m4	14	4	0	-44.600	14.500	59.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m4	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124522
; Seconds	0.12
;	user	0.12
;	system	0.04
;	cuser	0.08
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m5	D	2	18	AATGATGACTAATCGAG	14.5
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGCGCTGAGTCAGCATC	9.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	R	-2	14	GATGCTGACTCAGCGCG	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m5	D	-8	8	TGAGATGACTAAGCAAC	11.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	D	-13	3	AATGATGAGTCAGCAGT	13.7
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	R	-13	3	ACTGCTGACTCATCATT	13.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	D	6	22	CTGGATGACTCAGCCGG	9.8
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	R	6	22	CCGGCTGAGTCATCCAG	8.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	D	3	19	TCGGCTGACTCAGCATT	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	R	3	19	AATGCTGAGTCAGCCGA	12.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	D	0	16	TAAGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	R	0	16	GTTGCTTACTAATCTTA	9.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	D	-8	8	GCGGCTGAGTCAGCAGG	10.9
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	R	-8	8	CCTGCTGACTCAGCCGC	12.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATGATGACTAAGCGAG	15.4
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m5	D	0	16	ACAAATGACTCAGCAAC	10.4
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m5	D	9	25	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m5	D	-4	12	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	D	-2	14	TCAGATGACTAATCAGA	11.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGATTAGTCATCTGA	7.9
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	D	-11	5	TGTGATGAGTCAGCAGC	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	R	-11	5	GCTGCTGACTCATCACA	12.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATAATGACTAATCGAG	11.9
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	D	-14	2	CAAGCTGAGTAAGCAGA	11.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TCTGCTTACTCAGCTTG	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	-5	11	GTGGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	-5	11	CTGGCTGAGTCAGCCAC	8.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	30	46	GGCGATGAGTCAGCGAC	10.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	30	46	GTCGCTGACTCATCGCC	10.1
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m5	R	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m5	D	-1	15	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m5	R	-11	5	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m5	D	8	24	AATGATGAGTAAGCCAG	13.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	D	-7	9	GGAGCTGAGTCAGCAGT	10.6
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ACTGCTGACTCAGCTCC	11.9
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m5	D	-21	-5	AATAATGACTAATTGAG	8.2
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m5	D	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m5	D	7	23	AATAATGACTAAGCGAG	12.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m5	D	-8	8	AATAATGACTAATCGAG	11.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	D	-7	9	TATGCTTAGTAATCAAT	10.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ATTGATTACTAAGCATA	11.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-44	-28	CATCCTGACTAAGAAGG	8.4
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	D	-8	8	CACGATGACTCATCAGC	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-8	8	GCTGATGAGTCATCGTG	11.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	D	-17	-1	CTTGCTGAGTCATCACT	10.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	R	-17	-1	AGTGATGACTCAGCAAG	14.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	D	-13	3	ATAGATGACTCAGCAAC	12.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	R	-13	3	GTTGCTGAGTCATCTAT	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGCTGACTAAGTACG	12.7
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-1	15	AATGCTGACTAAGATAT	11.6
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	D	11	27	CCTGCTTACTGAGCAGT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	R	11	27	ACTGCTCAGTAAGCAGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	D	-16	0	TATGCTTACTCAGCGGA	11.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	R	-16	0	TCCGCTGAGTAAGCATA	10.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m5	R	-7	9	CATGCTGACTAATAATT	10.3
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	D	-4	12	TGTGCTTAGTCATCTAT	7.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	R	-4	12	ATAGATGACTAAGCACA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	D	-39	-23	GATGCTGAGTCAGCTAA	11.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	R	-39	-23	TTAGCTGACTCAGCATC	10.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	D	-16	0	AATGATGACTAAGCGCT	13.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	R	-16	0	AGCGCTTAGTCATCATT	7.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	D	-18	-2	GTTGCTGAGTCATCGCT	10.8
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AGCGATGACTCAGCAAC	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m5	D	-2	14	AGAGATGAGTAAGCGAT	11.1
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	D	-15	1	TCTGCTGAGTAAGCGGC	12.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	R	-15	1	GCCGCTTACTCAGCAGA	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m5	D	-3	13	CCAGCTGACTAAGCCCT	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGTGATTAGTAAGCAGA	10.4
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGCTTACTAATCACG	11.8
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m5	D	-1	15	GTGGCTGACGCAGCAGG	8.1
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	D	-12	4	ATTGCTTACTCAGCAAT	12.6
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	R	-12	4	ATTGCTGAGTAAGCAAT	13.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m5	D	-15	1	AATACTGACTAAGCTAT	11.4
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m5	D	-23	-7	AATAATGACTAATTGAG	8.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	D	-14	2	TTTGCTTAGTCATCACA	9.1
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TGTGATGACTAAGCAAA	13.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	D	-6	10	GAAGCTGACTCATCAGT	11.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	R	-6	10	ACTGATGAGTCAGCTTC	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	D	-12	4	GTTGCTGAGTCATCAAA	12.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	R	-12	4	TTTGATGACTCAGCAAC	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	R	-8	8	ATTAATGACTAATCGAG	11.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	D	3	19	ATTAATTAGTAAGCTAG	7.6
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m5	D	-25	-9	GATGCTGACTAAGACTG	11.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	D	-14	2	ACCGATGACTAATCAGT	12.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	R	-14	2	ACTGATTAGTCATCGGT	10.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m5	D	-13	3	GGTGATGACTAAGCGAG	13.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m5	R	25	41	GATGCTGACTAAGACTG	11.3
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m5	17	4	0	-51.400	16.500	67.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m5	89	0
;		TOTAL          	89	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124523
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0.07
;	csystem	0.04
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m1	D	3	17	ATGATGACTAATCGA	15.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GCGCTGAGTCAGCAT	8.4
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	R	-1	13	ATGCTGACTCAGCGC	12.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m1	D	-7	7	GAGATGACTAAGCAA	13.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	D	-12	2	ATGATGAGTCAGCAG	12.3
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	R	-12	2	CTGCTGACTCATCAT	10.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	D	7	21	TGGATGACTCAGCCG	10.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	R	7	21	CGGCTGAGTCATCCA	7.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	D	4	18	CGGCTGACTCAGCAT	9.8
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	R	4	18	ATGCTGAGTCAGCCG	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	D	1	15	AAGATTAGTAAGCAA	10.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	R	1	15	TTGCTTACTAATCTT	8.0
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	D	-7	7	CGGCTGAGTCAGCAG	8.6
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGCTGACTCAGCCG	11.4
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATGATGACTAAGCGA	16.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m1	D	1	15	CAAATGACTCAGCAA	11.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m1	D	10	24	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m1	D	-3	11	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m1	D	-1	13	CAGATGACTAATCAG	11.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m1	D	-39	-25	AAGATTAGTAAGTGA	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	D	-10	4	GTGATGAGTCAGCAG	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	R	-10	4	CTGCTGACTCATCAC	10.8
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATAATGACTAATCGA	13.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	D	-13	1	AAGCTGAGTAAGCAG	10.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGCTTACTCAGCTT	8.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	-4	10	TGGCTGACTCAGCCA	9.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	-4	10	TGGCTGAGTCAGCCA	8.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	31	45	GCGATGAGTCAGCGA	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	31	45	TCGCTGACTCATCGC	9.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m1	R	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m1	D	0	14	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m1	R	-10	4	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m1	D	9	23	ATGATGAGTAAGCCA	13.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	D	-6	8	GAGCTGAGTCAGCAG	9.0
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	R	-6	8	CTGCTGACTCAGCTC	10.3
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m1	D	-20	-6	ATAATGACTAATTGA	10.6
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m1	D	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m1	D	8	22	ATAATGACTAAGCGA	14.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ATAATGACTAATCGA	13.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	D	-6	8	ATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	R	-6	8	TTGATTACTAAGCAT	11.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ACGATGACTCATCAG	11.5
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGATGAGTCATCGT	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	D	-16	-2	TTGCTGAGTCATCAC	9.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	R	-16	-2	GTGATGACTCAGCAA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	D	-12	2	TAGATGACTCAGCAA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	R	-12	2	TTGCTGAGTCATCTA	9.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	0	14	ATGCTGACTAAGATA	11.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGCTTACTCAGCGG	10.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	R	-15	-1	CCGCTGAGTAAGCAT	9.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	TAATTGACTAAGCAG	8.2
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-6	8	ATGCTGACTAATAAT	10.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m1	R	-3	11	TAGATGACTAAGCAC	12.4
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	D	-38	-24	ATGCTGAGTCAGCTA	11.0
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	R	-38	-24	TAGCTGACTCAGCAT	10.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGATGACTAAGCGC	14.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	D	-17	-3	TTGCTGAGTCATCGC	9.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	GCGATGACTCAGCAA	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GAGATGAGTAAGCGA	12.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	D	-14	0	CTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	R	-14	0	CCGCTTACTCAGCAG	8.0
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m1	D	-2	12	CAGCTGACTAAGCCC	10.3
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GTGATTAGTAAGCAG	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	R	-1	13	CTGCTTACTAATCAC	9.4
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTTACTCAGCAA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGCTGAGTAAGCAA	12.4
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m1	D	-14	0	ATACTGACTAAGCTA	12.3
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m1	D	-22	-8	ATAATGACTAATTGA	10.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m1	R	-13	1	GTGATGACTAAGCAA	14.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	D	-5	9	AAGCTGACTCATCAG	10.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	R	-5	9	CTGATGAGTCAGCTT	10.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTGAGTCATCAA	10.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGATGACTCAGCAA	13.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	R	-7	7	TTAATGACTAATCGA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	D	4	18	TTAATTAGTAAGCTA	8.3
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m1	D	-24	-10	ATGCTGACTAAGACT	10.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	D	-13	1	CCGATGACTAATCAG	11.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGATTAGTCATCGG	8.6
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m1	D	-12	2	GTGATGACTAAGCGA	15.4
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m1	R	26	40	ATGCTGACTAAGACT	10.4
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m1	15	4	0	-48.500	16.000	64.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m1	83	0
;		TOTAL          	83	0
; Host name	rsat
; Job started	2025-04-03.124523
; Job done	2025-04-03.124523
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	D	2	17	AATGATGACTAATCGA	13.2
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	R	3	18	CTCGATTAGTCATCAT	8.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGCTGAGTCAGCAT	11.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	R	-1	14	GATGCTGACTCAGCGC	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	D	-8	7	TGAGATGACTAAGCAA	10.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GTTGCTTAGTCATCTC	9.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGGTGAGTCAGCCA	8.1
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	R	-1	14	CTGGCTGACTCACCGC	8.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	D	-13	2	AATGATGAGTCAGCAG	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	R	-12	3	ACTGCTGACTCATCAT	13.5
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	D	6	21	CTGGATGACTCAGCCG	11.4
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	R	7	22	CCGGCTGAGTCATCCA	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	D	3	18	TCGGCTGACTCAGCAT	12.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	R	4	19	AATGCTGAGTCAGCCG	13.2
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	D	0	15	TAAGATTAGTAAGCAA	8.1
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTTACTAATCTT	9.5
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	D	-8	7	GCGGCTGAGTCAGCAG	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	R	-7	8	CCTGCTGACTCAGCCG	13.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	D	-10	5	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATGATGACTAAGCGA	13.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	D	0	15	ACAAATGACTCAGCAA	9.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTGAGTCATTTG	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	D	9	24	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	R	10	25	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	D	-4	11	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	R	-3	12	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	D	-2	13	TCAGATGACTAATCAG	9.9
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGATTAGTCATCTG	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	D	-11	4	TGTGATGAGTCAGCAG	11.7
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	R	-10	5	GCTGCTGACTCATCAC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATAATGACTAATCGA	9.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	D	-20	-5	CTCGCTTAGTCATCAT	8.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	D	-14	1	CAAGCTGAGTAAGCAG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TCTGCTTACTCAGCTT	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	-5	10	GTGGCTGACTCAGCCA	12.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	-4	11	CTGGCTGAGTCAGCCA	11.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	30	45	GGCGATGAGTCAGCGA	11.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	31	46	GTCGCTGACTCATCGC	12.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m2	R	-5	10	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	D	-1	14	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	R	0	15	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	D	-11	4	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	R	-10	5	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	D	8	23	AATGATGAGTAAGCCA	12.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	R	9	24	CTGGCTTACTCATCAT	8.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	D	-7	8	GGAGCTGAGTCAGCAG	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ACTGCTGACTCAGCTC	13.1
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m2	D	-6	9	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m2	D	7	22	AATAATGACTAAGCGA	10.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m2	D	-8	7	AATAATGACTAATCGA	9.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	D	-7	8	TATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ATTGATTACTAAGCAT	10.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	D	-8	7	CACGATGACTCATCAG	11.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GCTGATGAGTCATCGT	12.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CTTGCTGAGTCATCAC	12.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	R	-16	-1	AGTGATGACTCAGCAA	13.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	D	-13	2	ATAGATGACTCAGCAA	12.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	R	-12	3	GTTGCTGAGTCATCTA	12.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	0	15	AATGCTGACTAAGATA	11.0
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m2	D	11	26	CCTGCTTACTGAGCAG	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	TATGCTTACTCAGCGG	11.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	-15	0	TCCGCTGAGTAAGCAT	10.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	34	49	TCCGCTGACTGATCCT	9.1
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m2	R	-6	9	CATGCTGACTAATAAT	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	D	-4	11	TGTGCTTAGTCATCTA	8.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	R	-3	12	ATAGATGACTAAGCAC	11.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	D	-39	-24	GATGCTGAGTCAGCTA	12.7
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	R	-38	-23	TTAGCTGACTCAGCAT	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	AATGATGACTAAGCGC	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	R	-15	0	AGCGCTTAGTCATCAT	8.3
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	GTTGCTGAGTCATCGC	12.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AGCGATGACTCAGCAA	12.3
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	D	-2	13	AGAGATGAGTAAGCGA	10.4
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	R	-1	14	ATCGCTTACTCATCTC	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	D	-15	0	TCTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	R	-14	1	GCCGCTTACTCAGCAG	10.5
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m2	D	-3	12	CCAGCTGACTAAGCCC	10.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGTGATTAGTAAGCAG	9.5
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGCTTACTAATCAC	10.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	D	-1	14	GTGGCTGACGCAGCAG	8.7
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	R	0	15	CCTGCTGCGTCAGCCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	D	-12	3	ATTGCTTACTCAGCAA	12.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	R	-11	4	ATTGCTGAGTAAGCAA	13.2
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m2	D	-15	0	AATACTGACTAAGCTA	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	D	-14	1	TTTGCTTAGTCATCAC	9.8
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TGTGATGACTAAGCAA	12.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	D	-6	9	GAAGCTGACTCATCAG	11.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	R	-5	10	ACTGATGAGTCAGCTT	11.8
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m2	R	27	42	GCCGCTGACAAAGCCC	7.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	D	-12	3	GTTGCTGAGTCATCAA	13.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	R	-11	4	TTTGATGACTCAGCAA	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m2	R	-7	8	ATTAATGACTAATCGA	9.5
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CATGCTGACTGATACT	8.2
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m2	D	-25	-10	GATGCTGACTAAGACT	10.8
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_7nt_mkv2_m2	R	-22	-7	TCTGCTGACTGATACG	8.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	D	-14	1	ACCGATGACTAATCAG	11.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	R	-13	2	ACTGATTAGTCATCGG	10.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	D	-13	2	GGTGATGACTAAGCGA	13.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	R	-12	3	CTCGCTTAGTCATCAC	8.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m2	R	26	41	GATGCTGACTAAGACT	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m2	16	4	0	-50.100	15.400	65.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m2	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-04-03.124524
; Job done	2025-04-03.124524
; Seconds	0.14
;	user	0.14
;	system	0.02
;	cuser	0.1
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	-9	6	TCATTTAGTAAGCTAG	12.8
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	2	17	TCGATTAGTCATCATT	10.9
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	D	3	18	ATGATGACTAATCGAG	9.1
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GCGCTGAGTCAGCATC	8.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTGCTTAGTCATCTCA	7.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	D	-7	8	GAGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m3	D	-12	3	ATGATGAGTCAGCAGT	11.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m3	R	3	18	ATGCTGAGTCAGCCGA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	R	0	15	TTGCTTACTAATCTTA	8.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	D	1	16	AAGATTAGTAAGCAAC	12.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m3	D	-7	8	CGGCTGAGTCAGCAGG	8.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	2	17	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m3	D	-24	-9	GCCATTAGTAAGCTTT	9.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	-2	13	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	9	24	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	D	10	25	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	D	-3	12	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m3	R	-2	13	CTGATTAGTCATCTGA	8.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	R	-40	-25	TCACTTACTAATCTTA	7.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	D	-39	-24	AAGATTAGTAAGTGAT	9.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m3	D	-10	5	GTGATGAGTCAGCAGC	10.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-17	-2	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-6	9	TCATTCAGTAAGCTAA	10.2
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATAATGACTAATCGAG	8.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGATTAGTCATTATT	7.7
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	2	17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	R	-20	-5	ATGATGACTAAGCGAG	11.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	TCGCTTAGTCATCATT	9.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-8	7	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGCTTACTCAGCTTG	8.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	D	-13	2	AAGCTGAGTAAGCAGA	9.3
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m3	D	31	46	GCGATGAGTCAGCGAC	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	R	-6	9	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	D	6	21	TTATTTAGTAAGCTGT	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-1	14	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	D	0	15	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	R	-11	4	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	-10	5	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	1	16	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m3	D	9	24	ATGATGAGTAAGCCAG	11.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m3	D	-6	9	GAGCTGAGTCAGCAGT	8.7
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m3	R	-32	-17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	D	-5	10	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	D	8	23	ATAATGACTAAGCGAG	10.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-19	-4	TTATTTAGTAAGCTAG	13.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TCGATTAGTCATTATT	7.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	D	-7	8	ATAATGACTAATCGAG	8.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	R	-7	8	TTGATTACTAAGCATA	11.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATGCTTAGTAATCAAT	11.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m3	R	-8	7	CTGATGAGTCATCGTG	8.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	GTGATGACTCAGCAAG	10.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	D	-16	-1	TTGCTGAGTCATCACT	7.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TTGCTGAGTCATCTAT	9.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	D	-12	3	TAGATGACTCAGCAAC	9.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	GTACTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	0	15	TATCTTAGTCAGCATT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	11	26	CTGCTCAGTAAGCAGG	9.3
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	27	42	ATGATTCGTAAGCTTA	10.2
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TGGTTTACTAAGCTGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	CCGCTGAGTAAGCATA	10.1
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGCTTACTCAGCGGA	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	TAATTGACTAAGCAGC	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TAGATGACTAAGCACA	8.7
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	D	-3	12	GTGCTTAGTCATCTAT	9.5
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m3	D	-38	-23	ATGCTGAGTCAGCTAA	9.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	GCGCTTAGTCATCATT	8.7
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGATGACTAAGCGCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	GCGATGACTCAGCAAC	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GAGATGAGTAAGCGAT	11.4
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	R	-15	0	CCGCTTACTCAGCAGA	7.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	D	-14	1	CTGCTGAGTAAGCGGC	8.7
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m3	R	-3	12	GGGCTTAGTCAGCTGG	9.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GTGATTAGTAAGCAGA	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGCTGAGTAAGCAAT	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTTACTCAGCAAT	10.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-26	-11	GTATTTAGTAAGCTAT	12.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TAGCTTAGTCAGTATT	7.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	D	-14	1	ATACTGACTAAGCTAT	9.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m3	R	-34	-19	TTATTTAGTAAGCTAG	13.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	R	-14	1	GTGATGACTAAGCAAA	10.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	D	-13	2	TTGCTTAGTCATCACA	8.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m3	R	-6	9	CTGATGAGTCAGCTTC	9.5
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m3	R	-7	8	CTCATTAGTAAGCGGA	8.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGATGACTCAGCAAC	10.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTGAGTCATCAAA	9.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTAATGACTAATCGAG	9.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	-7	8	TCGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	4	19	TTAATTAGTAAGCTAG	14.0
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	AGTATCAGTCAGCATG	7.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m3	R	-25	-10	AGTCTTAGTCAGCATC	7.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGATTAGTCATCGGT	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	D	-13	2	CCGATGACTAATCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-24	-9	TCACCTAGTAAGCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TCGCTTAGTCATCACC	7.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	D	-12	3	GTGATGACTAAGCGAG	11.1
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m3	D	26	41	AGTCTTAGTCAGCATC	7.6
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m3	16	4	0	-42.200	15.300	57.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m3	105	0
;		TOTAL          	105	0
; Host name	rsat
; Job started	2025-04-03.124525
; Job done	2025-04-03.124525
; Seconds	0.18
;	user	0.18
;	system	0
;	cuser	0.08
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:103141-103241(.)	site	oligos_7nt_mkv2_m4	D	-46	-36	TCCTATCTAGA	9.3
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m4	D	-23	-13	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m4	R	16	26	AACTATGTAGA	7.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m4	R	19	29	GCCTATCTATA	10.3
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m4	D	-16	-6	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m4	D	-29	-19	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m4	R	-3	7	ATCTATCTAAA	10.0
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m4	D	10	20	TCCTATCTAGA	9.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m4	R	16	26	GCCTATCTATA	10.3
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m4	D	-25	-15	AACTATGTAGA	7.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m4	R	21	31	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m4	R	23	33	GCCTATCTATA	10.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m4	D	-26	-16	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m4	R	20	30	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m4	R	-35	-25	ACCTATCGATA	8.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m4	D	-16	-6	GCCTATCTATA	10.3
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m4	R	-2	8	TCCTATCTAGA	9.3
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m4	D	11	21	ATCCATCTAAA	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m4	D	-33	-23	GCCTATCTAAA	10.5
ChrVIII_A_nidulans_FGSC_A4:2967195-2967295(.)	site	oligos_7nt_mkv2_m4	R	-18	-8	GACTACCTATA	7.9
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m4	R	-16	-6	TCCTATCTAGA	9.3
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m4	D	-3	7	ATCCATCTAAA	8.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m4	D	-48	-38	GCCTATCTAAA	10.5
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m4	R	-22	-12	ATCCATCTAAA	8.0
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m4	D	-9	1	TCCTATCTAGA	9.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m4	R	23	33	GCCTATCTAAA	10.5
ChrVI_A_nidulans_FGSC_A4:1031852-1031952(.)	site	oligos_7nt_mkv2_m4	R	-49	-39	GACTACCTATA	7.9
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m4	D	-33	-23	AACTATCTAAG	9.0
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m4	D	-24	-14	AACTATGTAGA	7.5
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m4	R	-50	-40	AACTATCTAAG	9.0
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m4	D	-8	2	AACTATGTAGA	7.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m4	D	-38	-28	AACTATCTAAG	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m4	11	4	0	-31.100	11.100	42.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m4	32	0
;		TOTAL          	32	0
; Host name	rsat
; Job started	2025-04-03.124526
; Job done	2025-04-03.124526
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-20	-9	TATCTAAATAAC	11.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-4	7	TTACTAAATGAT	10.2
ChrIII_A_nidulans_FGSC_A4:2487401-2487501(.)	site	oligos_7nt_mkv2_m5	R	19	30	GTTCTAAATAAG	8.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m5	R	33	44	TATCTAAATACA	8.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-41	-30	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-31	-20	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-4	7	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	-13	-2	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	3	14	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-26	-15	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-10	1	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m5	R	-7	4	TATCTAAATATA	7.6
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	21	32	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	31	42	AACCTAAATAAC	10.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	17	28	TATCTAAACAAC	9.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m5	R	-9	2	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m5	R	5	16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-23	-12	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-7	4	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	0	11	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	16	27	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-43	-32	TCTCTAAACAAC	8.2
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-27	-16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m5	D	-12	-1	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m5	D	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m5	D	14	25	CATCTAAATACG	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-30	-19	TATCTAAACAAC	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	TTACTAAATAAT	11.8
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m5	D	0	11	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m5	D	-21	-10	TTACTAAATACT	10.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-45	-34	TATCTAAACAAC	9.2
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-29	-18	TTACTAAATAAT	11.8
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m5	R	-26	-15	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	3	14	TTACTAATTAAT	8.1
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	19	30	TATCTAAACAAC	9.2
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-15	-4	ACCCAAAATAAC	7.8
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-5	6	AACCTAAATAAC	10.8
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m5	D	-11	0	AATCTAAATACA	8.2
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	22	33	ACCCAAAATAAC	7.8
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	32	43	AACCTAAATAAC	10.8
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m5	R	38	49	ACCCAAAATAAC	7.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m5	12	4	0	-31.200	12.000	43.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m5	44	0
;		TOTAL          	44	0
; Host name	rsat
; Job started	2025-04-03.124527
; Job done	2025-04-03.124527
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0.09
;	csystem	0.03
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	R	2	16	CGATTAGTCATCATT	12.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m1	D	4	18	TGATGACTAATCGAG	8.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTGACTCAGCGCG	11.0
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGCTGAGTCAGCATC	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTTAGTCATCTCA	9.0
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m1	D	-6	8	AGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m1	D	0	14	CGGTGAGTCAGCCAG	8.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGACTCATCATT	13.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGAGTCAGCAGT	14.0
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	R	6	20	GGCTGAGTCATCCAG	10.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m1	D	8	22	GGATGACTCAGCCGG	10.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	R	3	17	TGCTGAGTCAGCCGA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m1	D	5	19	GGCTGACTCAGCATT	13.0
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m1	D	2	16	AGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGCTGACTCAGCCGC	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m1	D	-6	8	GGCTGAGTCAGCAGG	13.2
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	R	-10	4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGCTTAGTCATCATT	13.0
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	R	0	14	TGCTGAGTCATTTGT	7.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m1	D	2	16	AAATGACTCAGCAAC	8.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	R	9	23	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m1	D	11	25	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	R	-4	10	CGATTAGTCATCATT	12.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGATGACTAATCGAG	8.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGATTAGTCATCTGA	9.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGACTAATCAGA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGCTGACTCATCACA	11.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m1	D	-9	5	TGATGAGTCAGCAGC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	TGATGACTAAGCGAG	9.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m1	D	-8	6	CGATTAGTCATTATT	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	R	-20	-6	TGATGACTAAGCGAG	9.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	CGCTTAGTCATCATT	13.0
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGCTTACTCAGCTTG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m1	D	-12	2	AGCTGAGTAAGCAGA	10.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	-5	9	GGCTGAGTCAGCCAC	12.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	-3	11	GGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	R	30	44	CGCTGACTCATCGCC	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m1	D	32	46	CGATGAGTCAGCGAC	12.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m1	D	-4	10	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	R	-1	13	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m1	D	1	15	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	R	-11	3	TGATGACTAATCGAG	8.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m1	D	-9	5	CGATTAGTCATCATT	12.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	R	8	22	GGCTTACTCATCATT	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m1	D	10	24	TGATGAGTAAGCCAG	9.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGCTGACTCAGCTCC	10.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m1	D	-5	9	AGCTGAGTCAGCAGT	13.3
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m1	R	-6	8	CGCTTAGTCATTATT	9.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m1	R	7	21	CGCTTAGTCATTATT	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m1	R	-8	6	CGATTAGTCATTATT	8.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	R	-7	7	TGATTACTAAGCATA	9.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TGCTTAGTAATCAAT	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-42	-28	TTCTTAGTCAGGATG	7.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	R	-8	6	TGATGAGTCATCGTG	12.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATGACTCATCAGC	11.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	TGATGACTCAGCAAG	12.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m1	D	-15	-1	TGCTGAGTCATCACT	13.0
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	R	-13	1	TGCTGAGTCATCTAT	11.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m1	D	-11	3	AGATGACTCAGCAAC	11.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	-18	-4	TACTTAGTCAGCATT	11.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m1	D	1	15	ATCTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m1	R	11	25	TGCTCAGTAAGCAGG	9.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTGAGTAAGCATA	11.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGCTTACTCAGCGGA	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m1	D	35	49	GGATCAGTCAGCGGA	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m1	D	-5	9	TTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	R	-4	10	AGATGACTAAGCACA	8.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m1	D	-2	12	TGCTTAGTCATCTAT	10.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	R	-39	-25	AGCTGACTCAGCATC	12.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m1	D	-37	-23	TGCTGAGTCAGCTAA	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	R	-16	-2	CGCTTAGTCATCATT	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m1	D	-14	0	TGATGACTAAGCGCT	8.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	R	-18	-4	CGATGACTCAGCAAC	12.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m1	D	-16	-2	TGCTGAGTCATCGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	R	-2	12	CGCTTACTCATCTCT	8.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m1	D	0	14	AGATGAGTAAGCGAT	9.3
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	CGCTTACTCAGCAGA	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m1	D	-13	1	TGCTGAGTAAGCGGC	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	R	-3	11	GGCTTAGTCAGCTGG	10.3
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m1	D	-1	13	AGCTGACTAAGCCCT	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	R	-2	12	TGCTTACTAATCACG	9.2
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m1	D	0	14	TGATTAGTAAGCAGA	10.2
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	R	-1	13	TGCTGCGTCAGCCAC	9.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m1	D	1	15	GGCTGACGCAGCAGG	9.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGCTGAGTAAGCAAT	12.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTTACTCAGCAAT	12.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m1	R	-15	-1	AGCTTAGTCAGTATT	9.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATGACTAAGCAAA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m1	D	-12	2	TGCTTAGTCATCACA	11.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	R	-6	8	TGATGAGTCAGCTTC	11.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m1	D	-4	10	AGCTGACTCATCAGT	11.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	R	-12	2	TGATGACTCAGCAAC	12.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m1	D	-10	4	TGCTGAGTCATCAAA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m1	D	-6	8	CGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m1	R	-17	-3	GTATCAGTCAGCATG	9.1
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m1	R	-25	-11	GTCTTAGTCAGCATC	11.2
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m1	D	-21	-7	GTATCAGTCAGCAGA	8.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	R	-14	0	TGATTAGTCATCGGT	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m1	D	-12	2	CGATGACTAATCAGT	10.0
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	R	-13	1	CGCTTAGTCATCACC	11.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m1	D	-11	3	TGATGACTAAGCGAG	9.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m1	D	27	41	GTCTTAGTCAGCATC	11.2
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m1	15	4	0	-45.800	15.400	61.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m1	103	0
;		TOTAL          	103	0
; Host name	rsat
; Job started	2025-04-03.124519
; Job done	2025-04-03.124519
; Seconds	0.14
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m2	D	2	16	AATGATGACTAATCG	15.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m2	R	0	14	GATGCTGACTCAGCG	13.3
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	D	-8	6	TGAGATGACTAAGCA	8.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GTTGCTTAGTCATCT	8.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	D	-13	1	AATGATGAGTCAGCA	10.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACTGCTGACTCATCA	13.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	D	3	17	TCGGCTGACTCAGCA	8.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	R	5	19	AATGCTGAGTCAGCC	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTTACTAATCT	11.2
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m2	R	-6	8	CCTGCTGACTCAGCC	10.9
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATGATGACTAAGCG	14.5
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	-23	-9	AAAGCTTACTAATGG	8.2
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	D	0	14	ACAAATGACTCAGCA	7.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTGAGTCATTT	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m2	D	9	23	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m2	D	-4	10	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m2	D	-2	12	TCAGATGACTAATCA	10.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m2	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	D	-11	3	TGTGATGAGTCAGCA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	R	-9	5	GCTGCTGACTCATCA	12.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATAATGACTAATCG	13.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	D	-14	0	CAAGCTGAGTAAGCA	9.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TCTGCTTACTCAGCT	8.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	D	-5	9	GTGGCTGACTCAGCC	7.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	R	32	46	GTCGCTGACTCATCG	12.0
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m2	R	-4	10	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m2	D	-1	13	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m2	R	-9	5	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m2	D	8	22	AATGATGAGTAAGCC	11.3
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ACTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m2	D	-21	-7	AATAATGACTAATTG	11.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m2	D	-6	8	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m2	D	7	21	AATAATGACTAAGCG	12.3
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m2	D	-8	6	AATAATGACTAATCG	13.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	D	-7	7	TATGCTTAGTAATCA	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ATTGATTACTAAGCA	10.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-42	-28	CATCCTGACTAAGAA	8.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	D	-8	6	CACGATGACTCATCA	11.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GCTGATGAGTCATCG	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CTTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	R	-15	-1	AGTGATGACTCAGCA	10.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	D	-13	1	ATAGATGACTCAGCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	R	-11	3	GTTGCTGAGTCATCT	10.5
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGCTGACTAAGTA	12.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	1	15	AATGCTGACTAAGAT	12.4
ChrI_A_nidulans_FGSC_A4:2695806-2695906(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACAAATGACTAATAT	7.9
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m2	D	11	25	CCTGCTTACTGAGCA	8.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	TATGCTTACTCAGCG	10.7
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	-14	0	TCCGCTGAGTAAGCA	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	35	49	TCCGCTGACTGATCC	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m2	R	-5	9	CATGCTGACTAATAA	12.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m2	R	-2	12	ATAGATGACTAAGCA	10.8
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	D	-39	-25	GATGCTGAGTCAGCT	10.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	R	-37	-23	TTAGCTGACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	AATGATGACTAAGCG	14.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	D	-18	-4	GTTGCTGAGTCATCG	11.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AGCGATGACTCAGCA	8.8
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	D	-2	12	AGAGATGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	R	0	14	ATCGCTTACTCATCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	TCTGCTGAGTAAGCG	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m2	D	-3	11	CCAGCTGACTAAGCC	9.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	D	-2	12	CGTGATTAGTAAGCA	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	R	0	14	TCTGCTTACTAATCA	11.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	D	-12	2	ATTGCTTACTCAGCA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	R	-10	4	ATTGCTGAGTAAGCA	11.8
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	AATACTGACTAAGCT	11.9
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m2	D	-23	-9	AATAATGACTAATTG	11.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	D	-14	0	TTTGCTTAGTCATCA	8.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TGTGATGACTAAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	D	-6	8	GAAGCTGACTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	R	-4	10	ACTGATGAGTCAGCT	9.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	D	-12	2	GTTGCTGAGTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	R	-10	4	TTTGATGACTCAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m2	R	-6	8	ATTAATGACTAATCG	12.4
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CATGCTGACTGATAC	9.9
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m2	D	-25	-11	GATGCTGACTAAGAC	11.9
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	R	-21	-7	TCTGCTGACTGATAC	9.0
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	D	-3	11	AACGCTGACAAATCT	9.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	D	-14	0	ACCGATGACTAATCA	12.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	R	-12	2	ACTGATTAGTCATCG	9.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m2	D	-13	1	GGTGATGACTAAGCG	12.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m2	R	27	41	GATGCTGACTAAGAC	11.9
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m2	15	4	0	-45.200	15.700	60.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m2	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124520
; Job done	2025-04-03.124520
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.1
;	csystem	0
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	-9	5	CTAGCTTACTAAATG	12.7
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	2	16	AATGATGACTAATCG	11.6
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m3	R	0	14	GATGCTGACTCAGCG	9.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m3	R	-6	8	GTTGCTTAGTCATCT	9.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m3	R	-11	3	ACTGCTGACTCATCA	11.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	D	0	14	TAAGATTAGTAAGCA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTTACTAATCT	12.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m3	R	-6	8	CCTGCTGACTCAGCC	8.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	D	-10	4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	-23	-9	AAAGCTTACTAATGG	10.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTGAGTCATTT	8.0
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	9	23	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-4	10	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m3	D	-2	12	TCAGATGACTAATCA	9.8
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m3	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m3	R	-9	5	GCTGCTGACTCATCA	10.1
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-16	-2	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-5	9	TTAGCTTACTGAATG	9.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATAATGACTAATCG	7.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	D	-20	-6	CTCGCTTAGTCATCA	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGATGACTAAGCG	10.5
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-7	7	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	D	-14	0	CAAGCTGAGTAAGCA	8.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TCTGCTTACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m3	R	32	46	GTCGCTGACTCATCG	9.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	D	-6	8	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	R	7	21	ACAGCTTACTAAATA	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-12	2	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-1	13	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	-9	5	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	2	16	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m3	R	10	24	CTGGCTTACTCATCA	9.8
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ACTGCTGACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m3	D	-32	-18	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	R	-4	10	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	D	-4	10	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	R	9	23	CTCGCTTAGTCATTA	8.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-19	-5	CTAGCTTACTAAATA	13.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-8	6	AATAATGACTAATCG	7.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TATGCTTAGTAATCA	10.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ATTGATTACTAAGCA	11.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CACGATGACTCATCA	8.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTTGCTGAGTCATCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	D	-13	1	ATAGATGACTCAGCA	8.8
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	R	-11	3	GTTGCTGAGTCATCT	8.1
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGCTGACTAAGTA	12.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	1	15	AATGCTGACTAAGAT	10.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	11	25	CCTGCTTACTGAGCA	10.1
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	27	41	TAAGCTTACGAATCA	9.5
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CCAGCTTAGTAAACC	8.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	TATGCTTACTCAGCG	10.9
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m3	R	-5	9	CATGCTGACTAATAA	12.0
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m3	R	-2	12	ATAGATGACTAAGCA	10.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m3	R	-37	-23	TTAGCTGACTCAGCA	9.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	AATGATGACTAAGCG	10.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	GTTGCTGAGTCATCG	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m3	R	0	14	ATCGCTTACTCATCT	10.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	TCTGCTGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m3	D	-3	11	CCAGCTGACTAAGCC	9.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CGTGATTAGTAAGCA	7.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	R	0	14	TCTGCTTACTAATCA	12.8
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	D	-12	2	ATTGCTTACTCAGCA	11.9
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	R	-10	4	ATTGCTGAGTAAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-26	-12	ATAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	AATACTGACTAAGCT	7.6
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	R	-13	1	ATAGCTTAGTCAGTA	9.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m3	D	-34	-20	CTAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	D	-14	0	TTTGCTTAGTCATCA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TGTGATGACTAAGCA	8.1
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m3	D	-6	8	GAAGCTGACTCATCA	10.1
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TCCGCTTACTAATGA	8.9
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	D	-12	2	GTTGCTGAGTCATCA	9.0
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	R	-10	4	TTTGATGACTCAGCA	8.9
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	-6	8	ATTAATGACTAATCG	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	5	19	CTAGCTTACTAATTA	13.6
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CATGCTGACTGATAC	8.5
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m3	D	-25	-11	GATGCTGACTAAGAC	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	D	-14	0	ACCGATGACTAATCA	9.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	R	-12	2	ACTGATTAGTCATCG	8.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-24	-10	ACTGCTTACTAGGTG	8.7
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-13	1	GGTGATGACTAAGCG	7.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	R	-11	3	CTCGCTTAGTCATCA	8.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m3	R	27	41	GATGCTGACTAAGAC	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m3	15	4	0	-45.300	14.800	60.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m3	91	0
;		TOTAL          	91	0
; Host name	rsat
; Job started	2025-04-03.124521
; Job done	2025-04-03.124521
; Seconds	0.14
;	user	0.14
;	system	0.01
;	cuser	0.1
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m4	D	3	16	ATGATGACTAATCG	12.8
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GCGCTGAGTCAGCA	10.8
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m4	R	0	13	ATGCTGACTCAGCG	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m4	D	-7	6	GAGATGACTAAGCA	12.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GCGGTGAGTCAGCC	8.3
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_6nt_mkv2_m4	R	0	13	TGGCTGACTCACCG	9.6
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m4	D	-12	1	ATGATGAGTCAGCA	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m4	R	-11	2	CTGCTGACTCATCA	11.9
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m4	D	7	20	TGGATGACTCAGCC	11.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m4	R	8	21	CGGCTGAGTCATCC	9.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m4	D	4	17	CGGCTGACTCAGCA	12.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m4	R	5	18	ATGCTGAGTCAGCC	11.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m4	D	1	14	AAGATTAGTAAGCA	8.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m4	D	-7	6	CGGCTGAGTCAGCA	11.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m4	R	-6	7	CTGCTGACTCAGCC	12.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m4	R	-8	5	ATGATGACTAAGCG	13.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m4	D	1	14	CAAATGACTCAGCA	10.1
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m4	D	10	23	ATGATGACTAATCG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m4	D	-3	10	ATGATGACTAATCG	12.8
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m4	D	-1	12	CAGATGACTAATCA	11.0
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m4	D	-10	3	GTGATGAGTCAGCA	12.6
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m4	R	-9	4	CTGCTGACTCATCA	11.9
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m4	R	-16	-3	ATGATGACTAAGCG	13.9
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m4	R	-8	5	ATAATGACTAATCG	10.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m4	R	-18	-5	ATGATGACTAAGCG	13.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m4	D	-13	0	AAGCTGAGTAAGCA	10.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m4	R	-12	1	CTGCTTACTCAGCT	9.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	D	-4	9	TGGCTGACTCAGCC	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	R	-3	10	TGGCTGAGTCAGCC	9.8
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	D	31	44	GCGATGAGTCAGCG	11.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m4	R	32	45	TCGCTGACTCATCG	11.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m4	R	-4	9	ATAATGACTAAGCG	11.4
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m4	D	0	13	ATGATGACTAATCG	12.8
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m4	R	-9	4	ATGATGACTAATCG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m4	D	9	22	ATGATGAGTAAGCC	11.6
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m4	R	10	23	TGGCTTACTCATCA	7.7
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m4	D	-6	7	GAGCTGAGTCAGCA	10.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m4	R	-5	8	CTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m4	D	-5	8	ATAATGACTAAGCG	11.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m4	D	8	21	ATAATGACTAAGCG	11.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m4	D	-7	6	ATAATGACTAATCG	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m4	D	-6	7	ATGCTTAGTAATCA	7.6
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m4	R	-5	8	TTGATTACTAAGCA	10.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	R	-42	-29	ATCCTGACTAAGAA	7.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	D	-7	6	ACGATGACTCATCA	12.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m4	R	-6	7	CTGATGAGTCATCG	11.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m4	D	-16	-3	TTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m4	R	-15	-2	GTGATGACTCAGCA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m4	D	-12	1	TAGATGACTCAGCA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m4	R	-11	2	TTGCTGAGTCATCT	9.6
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m4	R	-18	-5	ATGCTGACTAAGTA	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m4	R	1	14	ATGCTGACTAAGAT	10.4
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	D	-15	-2	ATGCTTACTCAGCG	10.8
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	R	-14	-1	CCGCTGAGTAAGCA	10.5
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	D	34	47	AGGATCAGTCAGCG	7.8
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m4	R	35	48	CCGCTGACTGATCC	7.6
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m4	R	-5	8	ATGCTGACTAATAA	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m4	R	-2	11	TAGATGACTAAGCA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m4	D	-38	-25	ATGCTGAGTCAGCT	11.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m4	R	-37	-24	TAGCTGACTCAGCA	12.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m4	D	-15	-2	ATGATGACTAAGCG	13.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m4	D	-17	-4	TTGCTGAGTCATCG	10.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m4	R	-16	-3	GCGATGACTCAGCA	12.6
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GAGATGAGTAAGCG	11.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m4	D	-14	-1	CTGCTGAGTAAGCG	11.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m4	R	-13	0	CCGCTTACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m4	D	-2	11	CAGCTGACTAAGCC	10.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m4	D	-1	12	GTGATTAGTAAGCA	9.1
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m4	R	0	13	CTGCTTACTAATCA	8.4
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m4	D	0	13	TGGCTGACGCAGCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m4	D	-11	2	TTGCTTACTCAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m4	R	-10	3	TTGCTGAGTAAGCA	11.3
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m4	D	-14	-1	ATACTGACTAAGCT	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m4	D	-13	0	TTGCTTAGTCATCA	7.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m4	R	-12	1	GTGATGACTAAGCA	13.5
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m4	D	-5	8	AAGCTGACTCATCA	11.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m4	R	-4	9	CTGATGAGTCAGCT	11.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m4	D	-11	2	TTGCTGAGTCATCA	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m4	R	-10	3	TTGATGACTCAGCA	13.6
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m4	R	-6	7	TTAATGACTAATCG	9.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m4	D	-24	-11	ATGCTGACTAAGAC	10.8
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m4	D	-13	0	CCGATGACTAATCA	11.2
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m4	R	-12	1	CTGATTAGTCATCG	8.4
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m4	D	-12	1	GTGATGACTAAGCG	13.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m4	R	27	40	ATGCTGACTAAGAC	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m4	14	4	0	-44.600	14.500	59.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m4	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124522
; Seconds	0.12
;	user	0.12
;	system	0.04
;	cuser	0.08
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m5	D	2	18	AATGATGACTAATCGAG	14.5
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGCGCTGAGTCAGCATC	9.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m5	R	-2	14	GATGCTGACTCAGCGCG	14.1
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m5	D	-8	8	TGAGATGACTAAGCAAC	11.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	D	-13	3	AATGATGAGTCAGCAGT	13.7
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m5	R	-13	3	ACTGCTGACTCATCATT	13.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	D	6	22	CTGGATGACTCAGCCGG	9.8
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_6nt_mkv2_m5	R	6	22	CCGGCTGAGTCATCCAG	8.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	D	3	19	TCGGCTGACTCAGCATT	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m5	R	3	19	AATGCTGAGTCAGCCGA	12.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	D	0	16	TAAGATTAGTAAGCAAC	9.8
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m5	R	0	16	GTTGCTTACTAATCTTA	9.1
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	D	-8	8	GCGGCTGAGTCAGCAGG	10.9
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m5	R	-8	8	CCTGCTGACTCAGCCGC	12.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATGATGACTAAGCGAG	15.4
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m5	D	0	16	ACAAATGACTCAGCAAC	10.4
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m5	D	9	25	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m5	D	-4	12	AATGATGACTAATCGAG	14.5
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	D	-2	14	TCAGATGACTAATCAGA	11.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGATTAGTCATCTGA	7.9
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	D	-11	5	TGTGATGAGTCAGCAGC	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m5	R	-11	5	GCTGCTGACTCATCACA	12.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m5	R	-10	6	AATAATGACTAATCGAG	11.9
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGATGACTAAGCGAG	15.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	D	-14	2	CAAGCTGAGTAAGCAGA	11.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TCTGCTTACTCAGCTTG	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	-5	11	GTGGCTGACTCAGCCAG	10.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	-5	11	CTGGCTGAGTCAGCCAC	8.2
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	D	30	46	GGCGATGAGTCAGCGAC	10.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m5	R	30	46	GTCGCTGACTCATCGCC	10.1
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m5	R	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m5	D	-1	15	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m5	R	-11	5	AATGATGACTAATCGAG	14.5
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m5	D	8	24	AATGATGAGTAAGCCAG	13.1
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	D	-7	9	GGAGCTGAGTCAGCAGT	10.6
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ACTGCTGACTCAGCTCC	11.9
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m5	D	-21	-5	AATAATGACTAATTGAG	8.2
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m5	D	-6	10	AATAATGACTAAGCGAG	12.7
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m5	D	7	23	AATAATGACTAAGCGAG	12.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m5	D	-8	8	AATAATGACTAATCGAG	11.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	D	-7	9	TATGCTTAGTAATCAAT	10.9
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m5	R	-7	9	ATTGATTACTAAGCATA	11.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-44	-28	CATCCTGACTAAGAAGG	8.4
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	D	-8	8	CACGATGACTCATCAGC	10.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m5	R	-8	8	GCTGATGAGTCATCGTG	11.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	D	-17	-1	CTTGCTGAGTCATCACT	10.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m5	R	-17	-1	AGTGATGACTCAGCAAG	14.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	D	-13	3	ATAGATGACTCAGCAAC	12.4
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m5	R	-13	3	GTTGCTGAGTCATCTAT	10.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-20	-4	AATGCTGACTAAGTACG	12.7
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m5	R	-1	15	AATGCTGACTAAGATAT	11.6
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	D	11	27	CCTGCTTACTGAGCAGT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m5	R	11	27	ACTGCTCAGTAAGCAGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	D	-16	0	TATGCTTACTCAGCGGA	11.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m5	R	-16	0	TCCGCTGAGTAAGCATA	10.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m5	R	-7	9	CATGCTGACTAATAATT	10.3
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	D	-4	12	TGTGCTTAGTCATCTAT	7.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m5	R	-4	12	ATAGATGACTAAGCACA	12.1
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	D	-39	-23	GATGCTGAGTCAGCTAA	11.6
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m5	R	-39	-23	TTAGCTGACTCAGCATC	10.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	D	-16	0	AATGATGACTAAGCGCT	13.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m5	R	-16	0	AGCGCTTAGTCATCATT	7.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	D	-18	-2	GTTGCTGAGTCATCGCT	10.8
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m5	R	-18	-2	AGCGATGACTCAGCAAC	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m5	D	-2	14	AGAGATGAGTAAGCGAT	11.1
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	D	-15	1	TCTGCTGAGTAAGCGGC	12.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m5	R	-15	1	GCCGCTTACTCAGCAGA	10.4
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m5	D	-3	13	CCAGCTGACTAAGCCCT	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	D	-2	14	CGTGATTAGTAAGCAGA	10.4
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m5	R	-2	14	TCTGCTTACTAATCACG	11.8
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_6nt_mkv2_m5	D	-1	15	GTGGCTGACGCAGCAGG	8.1
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	D	-12	4	ATTGCTTACTCAGCAAT	12.6
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m5	R	-12	4	ATTGCTGAGTAAGCAAT	13.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m5	D	-15	1	AATACTGACTAAGCTAT	11.4
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m5	D	-23	-7	AATAATGACTAATTGAG	8.2
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	D	-14	2	TTTGCTTAGTCATCACA	9.1
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m5	R	-14	2	TGTGATGACTAAGCAAA	13.7
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	D	-6	10	GAAGCTGACTCATCAGT	11.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m5	R	-6	10	ACTGATGAGTCAGCTTC	10.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	D	-12	4	GTTGCTGAGTCATCAAA	12.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m5	R	-12	4	TTTGATGACTCAGCAAC	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	R	-8	8	ATTAATGACTAATCGAG	11.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m5	D	3	19	ATTAATTAGTAAGCTAG	7.6
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m5	D	-25	-9	GATGCTGACTAAGACTG	11.3
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	D	-14	2	ACCGATGACTAATCAGT	12.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m5	R	-14	2	ACTGATTAGTCATCGGT	10.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m5	D	-13	3	GGTGATGACTAAGCGAG	13.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m5	R	25	41	GATGCTGACTAAGACTG	11.3
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m5	17	4	0	-51.400	16.500	67.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m5	89	0
;		TOTAL          	89	0
; Host name	rsat
; Job started	2025-04-03.124522
; Job done	2025-04-03.124523
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0.07
;	csystem	0.04
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m1	D	3	17	ATGATGACTAATCGA	15.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GCGCTGAGTCAGCAT	8.4
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	R	-1	13	ATGCTGACTCAGCGC	12.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m1	D	-7	7	GAGATGACTAAGCAA	13.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	D	-12	2	ATGATGAGTCAGCAG	12.3
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	R	-12	2	CTGCTGACTCATCAT	10.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	D	7	21	TGGATGACTCAGCCG	10.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	R	7	21	CGGCTGAGTCATCCA	7.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	D	4	18	CGGCTGACTCAGCAT	9.8
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	R	4	18	ATGCTGAGTCAGCCG	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	D	1	15	AAGATTAGTAAGCAA	10.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	R	1	15	TTGCTTACTAATCTT	8.0
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	D	-7	7	CGGCTGAGTCAGCAG	8.6
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGCTGACTCAGCCG	11.4
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATGATGACTAAGCGA	16.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m1	D	1	15	CAAATGACTCAGCAA	11.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m1	D	10	24	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m1	D	-3	11	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m1	D	-1	13	CAGATGACTAATCAG	11.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m1	D	-39	-25	AAGATTAGTAAGTGA	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	D	-10	4	GTGATGAGTCAGCAG	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	R	-10	4	CTGCTGACTCATCAC	10.8
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATAATGACTAATCGA	13.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	D	-13	1	AAGCTGAGTAAGCAG	10.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGCTTACTCAGCTT	8.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	-4	10	TGGCTGACTCAGCCA	9.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	-4	10	TGGCTGAGTCAGCCA	8.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	31	45	GCGATGAGTCAGCGA	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	31	45	TCGCTGACTCATCGC	9.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m1	R	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m1	D	0	14	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m1	R	-10	4	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m1	D	9	23	ATGATGAGTAAGCCA	13.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	D	-6	8	GAGCTGAGTCAGCAG	9.0
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	R	-6	8	CTGCTGACTCAGCTC	10.3
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m1	D	-20	-6	ATAATGACTAATTGA	10.6
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m1	D	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m1	D	8	22	ATAATGACTAAGCGA	14.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ATAATGACTAATCGA	13.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	D	-6	8	ATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	R	-6	8	TTGATTACTAAGCAT	11.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ACGATGACTCATCAG	11.5
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGATGAGTCATCGT	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	D	-16	-2	TTGCTGAGTCATCAC	9.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	R	-16	-2	GTGATGACTCAGCAA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	D	-12	2	TAGATGACTCAGCAA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	R	-12	2	TTGCTGAGTCATCTA	9.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	0	14	ATGCTGACTAAGATA	11.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGCTTACTCAGCGG	10.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	R	-15	-1	CCGCTGAGTAAGCAT	9.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	TAATTGACTAAGCAG	8.2
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-6	8	ATGCTGACTAATAAT	10.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m1	R	-3	11	TAGATGACTAAGCAC	12.4
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	D	-38	-24	ATGCTGAGTCAGCTA	11.0
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	R	-38	-24	TAGCTGACTCAGCAT	10.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGATGACTAAGCGC	14.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	D	-17	-3	TTGCTGAGTCATCGC	9.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	GCGATGACTCAGCAA	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GAGATGAGTAAGCGA	12.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	D	-14	0	CTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	R	-14	0	CCGCTTACTCAGCAG	8.0
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m1	D	-2	12	CAGCTGACTAAGCCC	10.3
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GTGATTAGTAAGCAG	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	R	-1	13	CTGCTTACTAATCAC	9.4
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTTACTCAGCAA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGCTGAGTAAGCAA	12.4
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m1	D	-14	0	ATACTGACTAAGCTA	12.3
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m1	D	-22	-8	ATAATGACTAATTGA	10.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m1	R	-13	1	GTGATGACTAAGCAA	14.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	D	-5	9	AAGCTGACTCATCAG	10.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	R	-5	9	CTGATGAGTCAGCTT	10.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTGAGTCATCAA	10.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGATGACTCAGCAA	13.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	R	-7	7	TTAATGACTAATCGA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	D	4	18	TTAATTAGTAAGCTA	8.3
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m1	D	-24	-10	ATGCTGACTAAGACT	10.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	D	-13	1	CCGATGACTAATCAG	11.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGATTAGTCATCGG	8.6
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m1	D	-12	2	GTGATGACTAAGCGA	15.4
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m1	R	26	40	ATGCTGACTAAGACT	10.4
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m1	15	4	0	-48.500	16.000	64.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m1	83	0
;		TOTAL          	83	0
; Host name	rsat
; Job started	2025-04-03.124523
; Job done	2025-04-03.124523
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	D	2	17	AATGATGACTAATCGA	13.2
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	R	3	18	CTCGATTAGTCATCAT	8.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGCTGAGTCAGCAT	11.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	R	-1	14	GATGCTGACTCAGCGC	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	D	-8	7	TGAGATGACTAAGCAA	10.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GTTGCTTAGTCATCTC	9.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGGTGAGTCAGCCA	8.1
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	R	-1	14	CTGGCTGACTCACCGC	8.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	D	-13	2	AATGATGAGTCAGCAG	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	R	-12	3	ACTGCTGACTCATCAT	13.5
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	D	6	21	CTGGATGACTCAGCCG	11.4
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	R	7	22	CCGGCTGAGTCATCCA	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	D	3	18	TCGGCTGACTCAGCAT	12.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	R	4	19	AATGCTGAGTCAGCCG	13.2
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	D	0	15	TAAGATTAGTAAGCAA	8.1
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTTACTAATCTT	9.5
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	D	-8	7	GCGGCTGAGTCAGCAG	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	R	-7	8	CCTGCTGACTCAGCCG	13.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	D	-10	5	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATGATGACTAAGCGA	13.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	D	0	15	ACAAATGACTCAGCAA	9.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTGAGTCATTTG	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	D	9	24	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	R	10	25	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	D	-4	11	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	R	-3	12	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	D	-2	13	TCAGATGACTAATCAG	9.9
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGATTAGTCATCTG	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	D	-11	4	TGTGATGAGTCAGCAG	11.7
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	R	-10	5	GCTGCTGACTCATCAC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATAATGACTAATCGA	9.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	D	-20	-5	CTCGCTTAGTCATCAT	8.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	D	-14	1	CAAGCTGAGTAAGCAG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TCTGCTTACTCAGCTT	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	-5	10	GTGGCTGACTCAGCCA	12.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	-4	11	CTGGCTGAGTCAGCCA	11.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	30	45	GGCGATGAGTCAGCGA	11.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	31	46	GTCGCTGACTCATCGC	12.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m2	R	-5	10	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	D	-1	14	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	R	0	15	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	D	-11	4	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	R	-10	5	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	D	8	23	AATGATGAGTAAGCCA	12.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	R	9	24	CTGGCTTACTCATCAT	8.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	D	-7	8	GGAGCTGAGTCAGCAG	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ACTGCTGACTCAGCTC	13.1
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m2	D	-6	9	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m2	D	7	22	AATAATGACTAAGCGA	10.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m2	D	-8	7	AATAATGACTAATCGA	9.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	D	-7	8	TATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ATTGATTACTAAGCAT	10.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	D	-8	7	CACGATGACTCATCAG	11.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GCTGATGAGTCATCGT	12.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CTTGCTGAGTCATCAC	12.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	R	-16	-1	AGTGATGACTCAGCAA	13.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	D	-13	2	ATAGATGACTCAGCAA	12.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	R	-12	3	GTTGCTGAGTCATCTA	12.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	0	15	AATGCTGACTAAGATA	11.0
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m2	D	11	26	CCTGCTTACTGAGCAG	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	TATGCTTACTCAGCGG	11.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	-15	0	TCCGCTGAGTAAGCAT	10.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	34	49	TCCGCTGACTGATCCT	9.1
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m2	R	-6	9	CATGCTGACTAATAAT	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	D	-4	11	TGTGCTTAGTCATCTA	8.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	R	-3	12	ATAGATGACTAAGCAC	11.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	D	-39	-24	GATGCTGAGTCAGCTA	12.7
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	R	-38	-23	TTAGCTGACTCAGCAT	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	AATGATGACTAAGCGC	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	R	-15	0	AGCGCTTAGTCATCAT	8.3
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	GTTGCTGAGTCATCGC	12.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AGCGATGACTCAGCAA	12.3
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	D	-2	13	AGAGATGAGTAAGCGA	10.4
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	R	-1	14	ATCGCTTACTCATCTC	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	D	-15	0	TCTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	R	-14	1	GCCGCTTACTCAGCAG	10.5
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m2	D	-3	12	CCAGCTGACTAAGCCC	10.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGTGATTAGTAAGCAG	9.5
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGCTTACTAATCAC	10.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	D	-1	14	GTGGCTGACGCAGCAG	8.7
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	R	0	15	CCTGCTGCGTCAGCCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	D	-12	3	ATTGCTTACTCAGCAA	12.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	R	-11	4	ATTGCTGAGTAAGCAA	13.2
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m2	D	-15	0	AATACTGACTAAGCTA	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	D	-14	1	TTTGCTTAGTCATCAC	9.8
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TGTGATGACTAAGCAA	12.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	D	-6	9	GAAGCTGACTCATCAG	11.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	R	-5	10	ACTGATGAGTCAGCTT	11.8
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m2	R	27	42	GCCGCTGACAAAGCCC	7.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	D	-12	3	GTTGCTGAGTCATCAA	13.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	R	-11	4	TTTGATGACTCAGCAA	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m2	R	-7	8	ATTAATGACTAATCGA	9.5
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CATGCTGACTGATACT	8.2
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m2	D	-25	-10	GATGCTGACTAAGACT	10.8
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_7nt_mkv2_m2	R	-22	-7	TCTGCTGACTGATACG	8.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	D	-14	1	ACCGATGACTAATCAG	11.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	R	-13	2	ACTGATTAGTCATCGG	10.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	D	-13	2	GGTGATGACTAAGCGA	13.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	R	-12	3	CTCGCTTAGTCATCAC	8.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m2	R	26	41	GATGCTGACTAAGACT	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m2	16	4	0	-50.100	15.400	65.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m2	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-04-03.124524
; Job done	2025-04-03.124524
; Seconds	0.14
;	user	0.14
;	system	0.02
;	cuser	0.1
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	-9	6	TCATTTAGTAAGCTAG	12.8
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	2	17	TCGATTAGTCATCATT	10.9
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	D	3	18	ATGATGACTAATCGAG	9.1
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GCGCTGAGTCAGCATC	8.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTGCTTAGTCATCTCA	7.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	D	-7	8	GAGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m3	D	-12	3	ATGATGAGTCAGCAGT	11.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m3	R	3	18	ATGCTGAGTCAGCCGA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	R	0	15	TTGCTTACTAATCTTA	8.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	D	1	16	AAGATTAGTAAGCAAC	12.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m3	D	-7	8	CGGCTGAGTCAGCAGG	8.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	2	17	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m3	D	-24	-9	GCCATTAGTAAGCTTT	9.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	-2	13	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	9	24	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	D	10	25	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	D	-3	12	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m3	R	-2	13	CTGATTAGTCATCTGA	8.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	R	-40	-25	TCACTTACTAATCTTA	7.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	D	-39	-24	AAGATTAGTAAGTGAT	9.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m3	D	-10	5	GTGATGAGTCAGCAGC	10.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-17	-2	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-6	9	TCATTCAGTAAGCTAA	10.2
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATAATGACTAATCGAG	8.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGATTAGTCATTATT	7.7
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	2	17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	R	-20	-5	ATGATGACTAAGCGAG	11.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	TCGCTTAGTCATCATT	9.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-8	7	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGCTTACTCAGCTTG	8.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	D	-13	2	AAGCTGAGTAAGCAGA	9.3
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m3	D	31	46	GCGATGAGTCAGCGAC	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	R	-6	9	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	D	6	21	TTATTTAGTAAGCTGT	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-1	14	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	D	0	15	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	R	-11	4	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	-10	5	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	1	16	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m3	D	9	24	ATGATGAGTAAGCCAG	11.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m3	D	-6	9	GAGCTGAGTCAGCAGT	8.7
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m3	R	-32	-17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	D	-5	10	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	D	8	23	ATAATGACTAAGCGAG	10.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-19	-4	TTATTTAGTAAGCTAG	13.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TCGATTAGTCATTATT	7.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	D	-7	8	ATAATGACTAATCGAG	8.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	R	-7	8	TTGATTACTAAGCATA	11.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATGCTTAGTAATCAAT	11.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m3	R	-8	7	CTGATGAGTCATCGTG	8.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	GTGATGACTCAGCAAG	10.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	D	-16	-1	TTGCTGAGTCATCACT	7.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TTGCTGAGTCATCTAT	9.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	D	-12	3	TAGATGACTCAGCAAC	9.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	GTACTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	0	15	TATCTTAGTCAGCATT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	11	26	CTGCTCAGTAAGCAGG	9.3
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	27	42	ATGATTCGTAAGCTTA	10.2
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TGGTTTACTAAGCTGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	CCGCTGAGTAAGCATA	10.1
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGCTTACTCAGCGGA	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	TAATTGACTAAGCAGC	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TAGATGACTAAGCACA	8.7
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	D	-3	12	GTGCTTAGTCATCTAT	9.5
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m3	D	-38	-23	ATGCTGAGTCAGCTAA	9.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	GCGCTTAGTCATCATT	8.7
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGATGACTAAGCGCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	GCGATGACTCAGCAAC	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GAGATGAGTAAGCGAT	11.4
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	R	-15	0	CCGCTTACTCAGCAGA	7.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	D	-14	1	CTGCTGAGTAAGCGGC	8.7
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m3	R	-3	12	GGGCTTAGTCAGCTGG	9.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GTGATTAGTAAGCAGA	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGCTGAGTAAGCAAT	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTTACTCAGCAAT	10.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-26	-11	GTATTTAGTAAGCTAT	12.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TAGCTTAGTCAGTATT	7.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	D	-14	1	ATACTGACTAAGCTAT	9.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m3	R	-34	-19	TTATTTAGTAAGCTAG	13.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	R	-14	1	GTGATGACTAAGCAAA	10.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	D	-13	2	TTGCTTAGTCATCACA	8.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m3	R	-6	9	CTGATGAGTCAGCTTC	9.5
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m3	R	-7	8	CTCATTAGTAAGCGGA	8.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGATGACTCAGCAAC	10.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTGAGTCATCAAA	9.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTAATGACTAATCGAG	9.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	-7	8	TCGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	4	19	TTAATTAGTAAGCTAG	14.0
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	AGTATCAGTCAGCATG	7.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m3	R	-25	-10	AGTCTTAGTCAGCATC	7.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGATTAGTCATCGGT	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	D	-13	2	CCGATGACTAATCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-24	-9	TCACCTAGTAAGCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TCGCTTAGTCATCACC	7.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	D	-12	3	GTGATGACTAAGCGAG	11.1
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m3	D	26	41	AGTCTTAGTCAGCATC	7.6
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m3	16	4	0	-42.200	15.300	57.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m3	105	0
;		TOTAL          	105	0
; Host name	rsat
; Job started	2025-04-03.124525
; Job done	2025-04-03.124525
; Seconds	0.18
;	user	0.18
;	system	0
;	cuser	0.08
;	csystem	0.02
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:103141-103241(.)	site	oligos_7nt_mkv2_m4	D	-46	-36	TCCTATCTAGA	9.3
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m4	D	-23	-13	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m4	R	16	26	AACTATGTAGA	7.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m4	R	19	29	GCCTATCTATA	10.3
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m4	D	-16	-6	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m4	D	-29	-19	GCCTATCTAAA	10.5
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m4	R	-3	7	ATCTATCTAAA	10.0
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m4	D	10	20	TCCTATCTAGA	9.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m4	R	16	26	GCCTATCTATA	10.3
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m4	D	-25	-15	AACTATGTAGA	7.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m4	R	21	31	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m4	R	23	33	GCCTATCTATA	10.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m4	D	-26	-16	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m4	R	20	30	GCCTATCTAAA	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m4	R	-35	-25	ACCTATCGATA	8.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m4	D	-16	-6	GCCTATCTATA	10.3
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m4	R	-2	8	TCCTATCTAGA	9.3
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m4	D	11	21	ATCCATCTAAA	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m4	D	-33	-23	GCCTATCTAAA	10.5
ChrVIII_A_nidulans_FGSC_A4:2967195-2967295(.)	site	oligos_7nt_mkv2_m4	R	-18	-8	GACTACCTATA	7.9
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m4	R	-16	-6	TCCTATCTAGA	9.3
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m4	D	-3	7	ATCCATCTAAA	8.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m4	D	-48	-38	GCCTATCTAAA	10.5
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m4	R	-22	-12	ATCCATCTAAA	8.0
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m4	D	-9	1	TCCTATCTAGA	9.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m4	R	23	33	GCCTATCTAAA	10.5
ChrVI_A_nidulans_FGSC_A4:1031852-1031952(.)	site	oligos_7nt_mkv2_m4	R	-49	-39	GACTACCTATA	7.9
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m4	D	-33	-23	AACTATCTAAG	9.0
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m4	D	-24	-14	AACTATGTAGA	7.5
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m4	R	-50	-40	AACTATCTAAG	9.0
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m4	D	-8	2	AACTATGTAGA	7.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m4	D	-38	-28	AACTATCTAAG	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m4	11	4	0	-31.100	11.100	42.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m4	32	0
;		TOTAL          	32	0
; Host name	rsat
; Job started	2025-04-03.124526
; Job done	2025-04-03.124526
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.11
;	csystem	0.01
; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-20	-9	TATCTAAATAAC	11.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-4	7	TTACTAAATGAT	10.2
ChrIII_A_nidulans_FGSC_A4:2487401-2487501(.)	site	oligos_7nt_mkv2_m5	R	19	30	GTTCTAAATAAG	8.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m5	R	33	44	TATCTAAATACA	8.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-41	-30	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-31	-20	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-4	7	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	-13	-2	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	3	14	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-26	-15	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-10	1	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m5	R	-7	4	TATCTAAATATA	7.6
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	21	32	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	31	42	AACCTAAATAAC	10.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	17	28	TATCTAAACAAC	9.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m5	R	-9	2	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m5	R	5	16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-23	-12	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-7	4	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	0	11	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	16	27	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-43	-32	TCTCTAAACAAC	8.2
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-27	-16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m5	D	-12	-1	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m5	D	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m5	D	14	25	CATCTAAATACG	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-30	-19	TATCTAAACAAC	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	TTACTAAATAAT	11.8
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m5	D	0	11	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m5	D	-21	-10	TTACTAAATACT	10.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-45	-34	TATCTAAACAAC	9.2
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-29	-18	TTACTAAATAAT	11.8
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m5	R	-26	-15	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	3	14	TTACTAATTAAT	8.1
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	19	30	TATCTAAACAAC	9.2
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-15	-4	ACCCAAAATAAC	7.8
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-5	6	AACCTAAATAAC	10.8
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m5	D	-11	0	AATCTAAATACA	8.2
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	22	33	ACCCAAAATAAC	7.8
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	32	43	AACCTAAATAAC	10.8
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m5	R	38	49	ACCCAAAATAAC	7.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m5	12	4	0	-31.200	12.000	43.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m5	44	0
;		TOTAL          	44	0
; Host name	rsat
; Job started	2025-04-03.124527
; Job done	2025-04-03.124527
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0.09
;	csystem	0.03
