; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m5/peak-motifs_oligos_7nt_mkv2_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-20	-9	TATCTAAATAAC	11.6
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m5	D	-4	7	TTACTAAATGAT	10.2
ChrIII_A_nidulans_FGSC_A4:2487401-2487501(.)	site	oligos_7nt_mkv2_m5	R	19	30	GTTCTAAATAAG	8.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m5	R	33	44	TATCTAAATACA	8.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-41	-30	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:3859-3959(.)	site	oligos_7nt_mkv2_m5	D	-31	-20	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	AACCTAAATAAC	10.8
ChrII_A_nidulans_FGSC_A4:39377-39477(.)	site	oligos_7nt_mkv2_m5	D	-4	7	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	-13	-2	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m5	D	3	14	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-26	-15	TATCTAAATAAC	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m5	D	-10	1	TTACTAAATGAT	10.2
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m5	R	-7	4	TATCTAAATATA	7.6
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	21	32	ACCCAAAATAAC	7.8
ChrII_A_nidulans_FGSC_A4:4067322-4067422(.)	site	oligos_7nt_mkv2_m5	R	31	42	AACCTAAATAAC	10.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m5	R	17	28	TATCTAAACAAC	9.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m5	R	-9	2	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m5	R	5	16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-23	-12	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m5	D	-7	4	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	0	11	TTACTAAATGAT	10.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m5	R	16	27	TATCTAAATAAC	11.6
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-43	-32	TCTCTAAACAAC	8.2
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m5	D	-27	-16	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m5	D	-12	-1	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m5	D	1	12	TTACTAAATAAT	11.8
ChrIV_A_nidulans_FGSC_A4:2861293-2861393(.)	site	oligos_7nt_mkv2_m5	D	14	25	CATCTAAATACG	8.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-30	-19	TATCTAAACAAC	9.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m5	D	-14	-3	TTACTAAATAAT	11.8
ChrVIII_A_nidulans_FGSC_A4:4914293-4914393(.)	site	oligos_7nt_mkv2_m5	D	0	11	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m5	D	-21	-10	TTACTAAATACT	10.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-45	-34	TATCTAAACAAC	9.2
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m5	D	-29	-18	TTACTAAATAAT	11.8
ChrVII_A_nidulans_FGSC_A4:3158896-3158996(.)	site	oligos_7nt_mkv2_m5	R	-26	-15	CATCTAAATACG	8.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	3	14	TTACTAATTAAT	8.1
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m5	R	19	30	TATCTAAACAAC	9.2
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-15	-4	ACCCAAAATAAC	7.8
ChrVI_A_nidulans_FGSC_A4:147466-147566(.)	site	oligos_7nt_mkv2_m5	R	-5	6	AACCTAAATAAC	10.8
ChrVI_A_nidulans_FGSC_A4:1130604-1130704(.)	site	oligos_7nt_mkv2_m5	D	-11	0	AATCTAAATACA	8.2
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	22	33	ACCCAAAATAAC	7.8
ChrV_A_nidulans_FGSC_A4:127977-128077(.)	site	oligos_7nt_mkv2_m5	R	32	43	AACCTAAATAAC	10.8
ChrV_A_nidulans_FGSC_A4:925415-925515(.)	site	oligos_7nt_mkv2_m5	R	38	49	ACCCAAAATAAC	7.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m5	12	4	0	-31.200	12.000	43.200	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m5	44	0
;		TOTAL          	44	0
; Host name	rsat
; Job started	2025-04-03.124527
; Job done	2025-04-03.124527
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0.09
;	csystem	0.03
