; compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
; Program version       	1.118
; Quick mode 
; Input files
;	file2 	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;	file1 	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_discovered.tf
; Output files
;	prefix       	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa
;	html_index   	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
;	alignments_1ton	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
;	match_table_txt	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
;	match_table_html	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
;	alignments_1ton_html	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
; Matrices
;	file1	10 matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file1	1	15	68
;		file1	2	15	54
;		file1	3	15	51
;		file1	4	14	66
;		file1	5	17	70
;		file1	6	15	61
;		file1	7	16	73
;		file1	8	16	65
;		file1	9	11	62
;		file1	10	12	57
;	file2	10 matrices	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file2		1		15		68
;		file2		2		15		54
;		file2		3		15		51
;		file2		4		14		66
;		file2		5		17		70
;		file2		6		15		61
;		file2		7		16		73
;		file2		8		16		65
;		file2		9		11		62
;		file2		10		12		57
; Column content
;	1	id1          	Identifier of the first matrix
;	2	id2          	Identifier of the second matrix
;	3	name1        	Name of the first matrix
;	4	name2        	Name of the second matrix
;	5	cor          	Pearson coefficient of correlation between frequency matrices
;	6	Ncor         	Normalized correlation. Ncor = cor * Wr
;	7	w1           	Width of the first matrix
;	8	w2           	Width of the second matrix
;	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
;	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
;	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
;	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
;	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
;	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
;	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
#id1	id2	name1	name2	cor	Ncor	w1	w2	w	W	Wr	wr1	wr2	strand	offset
oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m2	1.000	1.000	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m2	1.000	1.000	16	16	16	16	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m4	1.000	1.000	14	14	14	14	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m5	1.000	1.000	17	17	17	17	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv2_m4	oligos_7nt_mkv2_m4	oligos_7nt_mkv2_m4	oligos_7nt_mkv2_m4	1.000	1.000	11	11	11	11	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m1	1.000	1.000	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m3	1.000	1.000	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv2_m5	oligos_7nt_mkv2_m5	oligos_7nt_mkv2_m5	oligos_7nt_mkv2_m5	1.000	1.000	12	12	12	12	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m1	1.000	1.000	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m3	1.000	1.000	16	16	16	16	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m2	0.944	0.944	15	15	15	15	1.0000	1.0000	1.0000	R	0
oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m1	0.944	0.944	15	15	15	15	1.0000	1.0000	1.0000	R	0
oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m1	0.997	0.935	16	15	15	16	0.9375	0.9375	1.0000	R	0
oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m2	0.997	0.935	15	16	15	16	0.9375	1.0000	0.9375	R	-1
oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m3	0.995	0.932	16	15	15	16	0.9375	0.9375	1.0000	R	1
oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m3	0.995	0.932	15	16	15	16	0.9375	1.0000	0.9375	R	0
oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m2	0.983	0.925	17	16	16	17	0.9412	0.9412	1.0000	D	0
oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m5	0.983	0.925	16	17	16	17	0.9412	1.0000	0.9412	D	0
oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m4	0.975	0.910	15	14	14	15	0.9333	0.9333	1.0000	R	0
oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m1	0.975	0.910	14	15	14	15	0.9333	1.0000	0.9333	R	-1
oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m1	0.972	0.907	14	15	14	15	0.9333	1.0000	0.9333	D	0
oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m4	0.972	0.907	15	14	14	15	0.9333	0.9333	1.0000	D	0
oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m2	0.946	0.887	15	16	15	16	0.9375	1.0000	0.9375	D	-1
oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m1	0.946	0.887	16	15	15	16	0.9375	0.9375	1.0000	D	1
oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m2	0.885	0.885	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m3	0.885	0.885	15	15	15	15	1.0000	1.0000	1.0000	D	0
oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m2	0.939	0.880	16	15	15	16	0.9375	0.9375	1.0000	D	0
oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m2	0.939	0.880	15	16	15	16	0.9375	1.0000	0.9375	D	0
oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m1	0.980	0.865	17	15	15	17	0.8824	0.8824	1.0000	R	0
oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m5	0.980	0.865	15	17	15	17	0.8824	1.0000	0.8824	R	-2
oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m4	0.983	0.860	16	14	14	16	0.8750	0.8750	1.0000	D	1
oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m2	0.983	0.860	14	16	14	16	0.8750	1.0000	0.8750	D	-1
oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m5	0.974	0.859	15	17	15	17	0.8824	1.0000	0.8824	D	-1
oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m1	0.974	0.859	17	15	15	17	0.8824	0.8824	1.0000	D	1
oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m2	0.918	0.857	14	15	14	15	0.9333	1.0000	0.9333	D	-1
oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m4	0.918	0.857	15	14	14	15	0.9333	0.9333	1.0000	D	1
oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m2	0.954	0.842	17	15	15	17	0.8824	0.8824	1.0000	D	0
oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m2	oligos_6nt_mkv2_m5	0.954	0.842	15	17	15	17	0.8824	1.0000	0.8824	D	0
oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m1	0.831	0.831	15	15	15	15	1.0000	1.0000	1.0000	R	0
oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m1	oligos_6nt_mkv2_m3	0.831	0.831	15	15	15	15	1.0000	1.0000	1.0000	R	0
oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m1	0.942	0.824	15	15	14	16	0.8750	0.9333	0.9333	D	1
oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m2	0.942	0.824	15	15	14	16	0.8750	0.9333	0.9333	D	-1
oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m2	0.824	0.824	16	16	16	16	1.0000	1.0000	1.0000	R	0
oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m2	oligos_7nt_mkv2_m3	0.824	0.824	16	16	16	16	1.0000	1.0000	1.0000	R	0
oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m1	0.938	0.821	15	15	14	16	0.8750	0.9333	0.9333	R	-1
oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m1	0.938	0.821	15	15	14	16	0.8750	0.9333	0.9333	R	-1
oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m3	0.868	0.813	15	16	15	16	0.9375	1.0000	0.9375	R	0
oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m2	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m2	0.868	0.813	16	15	15	16	0.9375	0.9375	1.0000	R	1
oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m5	0.977	0.805	14	17	14	17	0.8235	1.0000	0.8235	D	-1
oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m4	0.977	0.805	17	14	14	17	0.8235	0.8235	1.0000	D	1
oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m3	0.832	0.783	17	16	16	17	0.9412	0.9412	1.0000	R	0
oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m5	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m5	0.832	0.783	16	17	16	17	0.9412	1.0000	0.9412	R	-1
oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m1	0.830	0.779	16	15	15	16	0.9375	0.9375	1.0000	D	1
oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m1	oligos_7nt_mkv2_m3	0.830	0.779	15	16	15	16	0.9375	1.0000	0.9375	D	-1
oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m2	0.821	0.770	15	16	15	16	0.9375	1.0000	0.9375	D	0
oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m2	oligos_6nt_mkv2_m3	0.821	0.770	16	15	15	16	0.9375	0.9375	1.0000	D	0
oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m3	0.815	0.764	15	16	15	16	0.9375	1.0000	0.9375	D	0
oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m1	oligos_7nt_mkv2_m3	oligos_7nt_mkv2_m1	0.815	0.764	16	15	15	16	0.9375	0.9375	1.0000	D	0
oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m5	0.842	0.743	15	17	15	17	0.8824	1.0000	0.8824	D	0
oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m5	oligos_6nt_mkv2_m3	0.842	0.743	17	15	15	17	0.8824	0.8824	1.0000	D	0
oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m3	0.783	0.731	14	15	14	15	0.9333	1.0000	0.9333	D	-1
oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m4	oligos_6nt_mkv2_m3	oligos_6nt_mkv2_m4	0.783	0.731	15	14	14	15	0.9333	0.9333	1.0000	D	1
oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m1	0.803	0.702	15	15	14	16	0.8750	0.9333	0.9333	D	1
oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m1	oligos_6nt_mkv2_m3	0.803	0.702	15	15	14	16	0.8750	0.9333	0.9333	D	-1
oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m3	0.780	0.683	14	16	14	16	0.8750	1.0000	0.8750	R	-1
oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m4	oligos_7nt_mkv2_m3	oligos_6nt_mkv2_m4	0.780	0.683	16	14	14	16	0.8750	0.8750	1.0000	R	1
oligos_7nt_mkv2_m5	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m5	oligos_6nt_mkv2_m3	0.704	0.414	12	15	10	17	0.5882	0.8333	0.6667	D	-5
oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m5	oligos_6nt_mkv2_m3	oligos_7nt_mkv2_m5	0.704	0.414	15	12	10	17	0.5882	0.6667	0.8333	D	5
oligos_7nt_mkv2_m4	oligos_7nt_mkv2_m5	oligos_7nt_mkv2_m4	oligos_7nt_mkv2_m5	0.753	0.402	11	12	8	15	0.5333	0.7273	0.6667	D	3
oligos_7nt_mkv2_m5	oligos_7nt_mkv2_m4	oligos_7nt_mkv2_m5	oligos_7nt_mkv2_m4	0.753	0.402	12	11	8	15	0.5333	0.6667	0.7273	D	-3
; Host name	rsat
; Job started	2025-04-03.124506
; Job done	2025-04-03.124518
; Seconds	0.4
;	user	0.4
;	system	0.37
;	cuser	9.64
;	csystem	1.76
