; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	27
;

; assembly # 1	seed: tgactaa	5 assembled patterns	length 11
;    alignt	    rev_cpl	score
gatgact....	....agtcatc	8.46
.atgacta...	...tagtcat.	2.20
..tgactaa..	..ttagtca..	12.22
...gactaag.	.cttagtc...	4.50
....actaagc	gcttagt....	3.02
gatgactaagc	gcttagtcatc	12.22	best consensus

; assembly # 2	seed: tgactca	6 assembled patterns	length 12
;     alignt	     rev_cpl	score
tgctgac.....	.....gtcagca	3.60
.gctgact....	....agtcagc.	10.26
..ctgactc...	...gagtcag..	4.04
...tgactca..	..tgagtca...	11.45
....gactcag.	.ctgagtc....	3.08
.....actcagc	gctgagt.....	6.11
tgctgactcagc	gctgagtcagca	11.45	best consensus

; assembly # 3	seed: agtaagc	6 assembled patterns	length 12
;     alignt	     rev_cpl	score
gattagt.....	.....actaatc	0.13
.attagta....	....tactaat.	1.83
..ttagtaa...	...ttactaa..	3.55
...tagtaag..	..cttacta...	3.02
....agtaagc.	.gcttact....	7.82
.....gtaagca	tgcttac.....	2.04
gattagtaagca	tgcttactaatc	7.82	best consensus

; assembly # 4	seed: ctatcta	1 assembled patterns	length 7
;alignt	rev_cpl	score
ctatcta	tagatag	2.07
ctatcta	tagatag	2.07	best consensus

; assembly # 5	seed: ctaaata	2 assembled patterns	length 8
; alignt	 rev_cpl	score
actaaat.	.atttagt	0.04
.ctaaata	tatttag.	0.85
actaaata	tatttagt	0.85	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 6.
; Host name	rsat
; Job started	2025-04-03.124500
; Job done	2025-04-03.124501
; Seconds	0.94
;	user	0.94
;	system	0.01
;	cuser	0
;	csystem	0
