; position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 8h_Se_N6 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
; Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
; Sequence file                	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
; Sequence format              	fasta
; Sequence type                	dna
; Output file                  	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
; Oligo length                 	1
; Occurrences counted  on a single  strands
; Conditions of applicability checked.
; Background model estimation: homogeneous repartition
; Sequence statistics:
;	Nb of sequences              	150
;	Sum of sequence lengths      	15000
;	Min sequence length          	0
;	Max sequence length          	100
;	Average sequence length      	100
;	Possible positions           	15000
; Oligonucleotide statistics:
;	Total occurrences    	10578
; Position interval parameters:
;	Position interval    	20
;	Number of windows    	6
;	Total positions      	15000
;	Degrees of freedom   	5
; K-mer clustering parameters:
;	Number of clusters   	0
;	Clustering method    	complete
; Position intervals:
;	window	[min,max]	mid	seq	occ
;	1	-3	[-59,-40]	-49.5	150	1500
;	2	-2	[-39,-20]	-29.5	150	3000
;	3	-1	[-19,0]	-9.5	150	3000
;	4	0	[1,20]	10.5	150	3000
;	5	1	[21,40]	30.5	150	3000
;	6	2	[41,60]	50.5	150	1500
;
; Column headers
;	1	seq            	pattern sequence
;	2	id             	pattern identifier
;	3	occ            	pattern occurrences
;	4	chi2           	observed chi-square
;	5	df             	degrees of freedom
;	6	Pval           	P-value (probability for one word to be a false positive)
;	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
;	8	sig            	Significance (sig = -log10(Eval))
;	9	rank           	rank of the pattern according to sorting criterion
;	10	-49.5          	occurrences in window	1	[-59,-40]
;	11	-29.5          	occurrences in window	2	[-39,-20]
;	12	-9.5           	occurrences in window	3	[-19,0]
;	13	10.5           	occurrences in window	4	[1,20]
;	14	30.5           	occurrences in window	5	[21,40]
;	15	50.5           	occurrences in window	6	[41,60]
#seq	id	occ	chi2	df	Pval	Eval	sig	rank	-49.5	-29.5	-9.5	10.5	30.5	50.5
c	c	2591	13.4	5	2.0e-02	0.078	1.11	1	277	497	469	512	538	298
a	a	2795	10.3	5	6.8e-02	0.27	0.57	2	290	574	509	543	564	315
t	t	2667	8.5	5	1.3e-01	0.53	0.28	3	298	543	548	491	514	273
g	g	2525	5.3	5	3.8e-01	1.5	-0.18	4	276	483	493	486	527	260
; Host name	rsat
; Job started	2025-04-03.124451
; Job done	2025-04-03.124451
; Seconds	0.18
;	user	0.18
;	system	0
;	cuser	0
;	csystem	0
