; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m3/peak-motifs_oligos_7nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	-9	6	TCATTTAGTAAGCTAG	12.8
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	R	2	17	TCGATTAGTCATCATT	10.9
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m3	D	3	18	ATGATGACTAATCGAG	9.1
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GCGCTGAGTCAGCATC	8.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTGCTTAGTCATCTCA	7.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m3	D	-7	8	GAGATGACTAAGCAAC	9.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m3	D	-12	3	ATGATGAGTCAGCAGT	11.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m3	R	3	18	ATGCTGAGTCAGCCGA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	R	0	15	TTGCTTACTAATCTTA	8.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m3	D	1	16	AAGATTAGTAAGCAAC	12.3
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m3	D	-7	8	CGGCTGAGTCAGCAGG	8.3
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m3	D	2	17	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m3	D	-24	-9	GCCATTAGTAAGCTTT	9.6
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	-2	13	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	R	9	24	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m3	D	10	25	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TCATTTAGTAAGCTAG	12.8
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TCGATTAGTCATCATT	10.9
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m3	D	-3	12	ATGATGACTAATCGAG	9.1
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m3	R	-2	13	CTGATTAGTCATCTGA	8.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	R	-40	-25	TCACTTACTAATCTTA	7.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m3	D	-39	-24	AAGATTAGTAAGTGAT	9.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m3	D	-10	5	GTGATGAGTCAGCAGC	10.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	ATGATGACTAAGCGAG	11.0
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-17	-2	TCGCTTAGTCATCATT	9.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m3	D	-6	9	TCATTCAGTAAGCTAA	10.2
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	R	-10	5	ATAATGACTAATCGAG	8.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	-9	6	TCGATTAGTCATTATT	7.7
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m3	D	2	17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	R	-20	-5	ATGATGACTAAGCGAG	11.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	TCGCTTAGTCATCATT	9.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m3	D	-8	7	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGCTTACTCAGCTTG	8.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m3	D	-13	2	AAGCTGAGTAAGCAGA	9.3
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m3	D	31	46	GCGATGAGTCAGCGAC	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	R	-6	9	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m3	D	6	21	TTATTTAGTAAGCTGT	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	R	-1	14	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m3	D	0	15	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	R	-11	4	ATGATGACTAATCGAG	9.1
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	-10	5	TCGATTAGTCATCATT	10.9
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m3	D	1	16	TCATTTAGTAAGCTAG	12.8
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m3	D	9	24	ATGATGAGTAAGCCAG	11.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m3	D	-6	9	GAGCTGAGTCAGCAGT	8.7
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m3	R	-32	-17	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m3	D	-5	10	ATAATGACTAAGCGAG	10.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TTATTTAGTAAGCTAG	13.4
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m3	D	8	23	ATAATGACTAAGCGAG	10.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-19	-4	TTATTTAGTAAGCTAG	13.4
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TCGATTAGTCATTATT	7.7
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m3	D	-7	8	ATAATGACTAATCGAG	8.5
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	R	-7	8	TTGATTACTAAGCATA	11.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATGCTTAGTAATCAAT	11.0
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m3	R	-8	7	CTGATGAGTCATCGTG	8.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	GTGATGACTCAGCAAG	10.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m3	D	-16	-1	TTGCTGAGTCATCACT	7.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TTGCTGAGTCATCTAT	9.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m3	D	-12	3	TAGATGACTCAGCAAC	9.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	-19	-4	GTACTTAGTCAGCATT	10.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m3	D	0	15	TATCTTAGTCAGCATT	9.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	11	26	CTGCTCAGTAAGCAGG	9.3
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m3	R	27	42	ATGATTCGTAAGCTTA	10.2
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TGGTTTACTAAGCTGG	10.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	CCGCTGAGTAAGCATA	10.1
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGCTTACTCAGCGGA	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	TAATTGACTAAGCAGC	7.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m3	D	-6	9	ATTATTAGTCAGCATG	10.9
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	R	-4	11	TAGATGACTAAGCACA	8.7
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m3	D	-3	12	GTGCTTAGTCATCTAT	9.5
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m3	D	-38	-23	ATGCTGAGTCAGCTAA	9.9
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	R	-16	-1	GCGCTTAGTCATCATT	8.7
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m3	D	-15	0	ATGATGACTAAGCGCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m3	R	-18	-3	GCGATGACTCAGCAAC	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GAGATGAGTAAGCGAT	11.4
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	R	-15	0	CCGCTTACTCAGCAGA	7.6
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m3	D	-14	1	CTGCTGAGTAAGCGGC	8.7
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m3	R	-3	12	GGGCTTAGTCAGCTGG	9.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m3	D	-1	14	GTGATTAGTAAGCAGA	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGCTGAGTAAGCAAT	12.7
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTTACTCAGCAAT	10.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-26	-11	GTATTTAGTAAGCTAT	12.7
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	R	-15	0	TAGCTTAGTCAGTATT	7.5
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m3	D	-14	1	ATACTGACTAAGCTAT	9.7
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m3	R	-34	-19	TTATTTAGTAAGCTAG	13.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	R	-14	1	GTGATGACTAAGCAAA	10.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m3	D	-13	2	TTGCTTAGTCATCACA	8.3
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m3	R	-6	9	CTGATGAGTCAGCTTC	9.5
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m3	R	-7	8	CTCATTAGTAAGCGGA	8.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	R	-12	3	TTGATGACTCAGCAAC	10.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m3	D	-11	4	TTGCTGAGTCATCAAA	9.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	R	-8	7	TTAATGACTAATCGAG	9.2
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	-7	8	TCGATTAGTCATTAAT	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m3	D	4	19	TTAATTAGTAAGCTAG	14.0
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m3	R	-17	-2	AGTATCAGTCAGCATG	7.7
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m3	R	-25	-10	AGTCTTAGTCAGCATC	7.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	R	-14	1	CTGATTAGTCATCGGT	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m3	D	-13	2	CCGATGACTAATCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-24	-9	TCACCTAGTAAGCAGT	8.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	R	-13	2	TCGCTTAGTCATCACC	7.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m3	D	-12	3	GTGATGACTAAGCGAG	11.1
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m3	D	26	41	AGTCTTAGTCAGCATC	7.6
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m3	16	4	0	-42.200	15.300	57.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m3	105	0
;		TOTAL          	105	0
; Host name	rsat
; Job started	2025-04-03.124525
; Job done	2025-04-03.124525
; Seconds	0.18
;	user	0.18
;	system	0
;	cuser	0.08
;	csystem	0.02
