; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	D	2	17	AATGATGACTAATCGA	13.2
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m2	R	3	18	CTCGATTAGTCATCAT	8.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGCTGAGTCAGCAT	11.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m2	R	-1	14	GATGCTGACTCAGCGC	13.8
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	D	-8	7	TGAGATGACTAAGCAA	10.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GTTGCTTAGTCATCTC	9.2
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGCGGTGAGTCAGCCA	8.1
ChrIII_A_nidulans_FGSC_A4:975153-975253(.)	site	oligos_7nt_mkv2_m2	R	-1	14	CTGGCTGACTCACCGC	8.5
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	D	-13	2	AATGATGAGTCAGCAG	12.8
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m2	R	-12	3	ACTGCTGACTCATCAT	13.5
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	D	6	21	CTGGATGACTCAGCCG	11.4
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m2	R	7	22	CCGGCTGAGTCATCCA	11.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	D	3	18	TCGGCTGACTCAGCAT	12.0
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m2	R	4	19	AATGCTGAGTCAGCCG	13.2
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	D	0	15	TAAGATTAGTAAGCAA	8.1
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTTACTAATCTT	9.5
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	D	-8	7	GCGGCTGAGTCAGCAG	11.7
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m2	R	-7	8	CCTGCTGACTCAGCCG	13.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	D	-10	5	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATGATGACTAAGCGA	13.8
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	D	0	15	ACAAATGACTCAGCAA	9.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m2	R	1	16	GTTGCTGAGTCATTTG	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	D	9	24	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m2	R	10	25	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	D	-4	11	AATGATGACTAATCGA	13.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m2	R	-3	12	CTCGATTAGTCATCAT	8.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	D	-2	13	TCAGATGACTAATCAG	9.9
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGATTAGTCATCTG	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	D	-11	4	TGTGATGAGTCAGCAG	11.7
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m2	R	-10	5	GCTGCTGACTCATCAC	13.3
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	CTCGCTTAGTCATCAT	8.6
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m2	R	-9	6	AATAATGACTAATCGA	9.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	D	-20	-5	CTCGCTTAGTCATCAT	8.6
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGATGACTAAGCGA	13.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	D	-14	1	CAAGCTGAGTAAGCAG	10.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TCTGCTTACTCAGCTT	9.9
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	-5	10	GTGGCTGACTCAGCCA	12.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	-4	11	CTGGCTGAGTCAGCCA	11.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	D	30	45	GGCGATGAGTCAGCGA	11.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m2	R	31	46	GTCGCTGACTCATCGC	12.2
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m2	R	-5	10	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	D	-1	14	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m2	R	0	15	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	D	-11	4	CTCGATTAGTCATCAT	8.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m2	R	-10	5	AATGATGACTAATCGA	13.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	D	8	23	AATGATGAGTAAGCCA	12.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m2	R	9	24	CTGGCTTACTCATCAT	8.9
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	D	-7	8	GGAGCTGAGTCAGCAG	10.5
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ACTGCTGACTCAGCTC	13.1
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m2	D	-6	9	AATAATGACTAAGCGA	10.2
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m2	D	7	22	AATAATGACTAAGCGA	10.2
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m2	D	-8	7	AATAATGACTAATCGA	9.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	D	-7	8	TATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m2	R	-6	9	ATTGATTACTAAGCAT	10.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	D	-8	7	CACGATGACTCATCAG	11.8
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m2	R	-7	8	GCTGATGAGTCATCGT	12.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CTTGCTGAGTCATCAC	12.3
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m2	R	-16	-1	AGTGATGACTCAGCAA	13.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	D	-13	2	ATAGATGACTCAGCAA	12.3
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m2	R	-12	3	GTTGCTGAGTCATCTA	12.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	-19	-4	AATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m2	R	0	15	AATGCTGACTAAGATA	11.0
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_7nt_mkv2_m2	D	11	26	CCTGCTTACTGAGCAG	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	TATGCTTACTCAGCGG	11.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	-15	0	TCCGCTGAGTAAGCAT	10.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m2	R	34	49	TCCGCTGACTGATCCT	9.1
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m2	R	-6	9	CATGCTGACTAATAAT	10.1
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	D	-4	11	TGTGCTTAGTCATCTA	8.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m2	R	-3	12	ATAGATGACTAAGCAC	11.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	D	-39	-24	GATGCTGAGTCAGCTA	12.7
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m2	R	-38	-23	TTAGCTGACTCAGCAT	11.3
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	D	-16	-1	AATGATGACTAAGCGC	13.0
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m2	R	-15	0	AGCGCTTAGTCATCAT	8.3
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	D	-18	-3	GTTGCTGAGTCATCGC	12.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m2	R	-17	-2	AGCGATGACTCAGCAA	12.3
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	D	-2	13	AGAGATGAGTAAGCGA	10.4
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m2	R	-1	14	ATCGCTTACTCATCTC	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	D	-15	0	TCTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m2	R	-14	1	GCCGCTTACTCAGCAG	10.5
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m2	D	-3	12	CCAGCTGACTAAGCCC	10.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	D	-2	13	CGTGATTAGTAAGCAG	9.5
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m2	R	-1	14	TCTGCTTACTAATCAC	10.0
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	D	-1	14	GTGGCTGACGCAGCAG	8.7
ChrVII_A_nidulans_FGSC_A4:785691-785791(.)	site	oligos_7nt_mkv2_m2	R	0	15	CCTGCTGCGTCAGCCA	9.0
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	D	-12	3	ATTGCTTACTCAGCAA	12.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m2	R	-11	4	ATTGCTGAGTAAGCAA	13.2
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m2	D	-15	0	AATACTGACTAAGCTA	9.9
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	D	-14	1	TTTGCTTAGTCATCAC	9.8
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m2	R	-13	2	TGTGATGACTAAGCAA	12.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	D	-6	9	GAAGCTGACTCATCAG	11.6
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m2	R	-5	10	ACTGATGAGTCAGCTT	11.8
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_7nt_mkv2_m2	R	27	42	GCCGCTGACAAAGCCC	7.6
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	D	-12	3	GTTGCTGAGTCATCAA	13.3
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m2	R	-11	4	TTTGATGACTCAGCAA	13.5
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m2	R	-7	8	ATTAATGACTAATCGA	9.5
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_7nt_mkv2_m2	D	-17	-2	CATGCTGACTGATACT	8.2
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m2	D	-25	-10	GATGCTGACTAAGACT	10.8
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_7nt_mkv2_m2	R	-22	-7	TCTGCTGACTGATACG	8.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	D	-14	1	ACCGATGACTAATCAG	11.7
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m2	R	-13	2	ACTGATTAGTCATCGG	10.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	D	-13	2	GGTGATGACTAAGCGA	13.1
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m2	R	-12	3	CTCGCTTAGTCATCAC	8.9
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m2	R	26	41	GATGCTGACTAAGACT	10.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m2	16	4	0	-50.100	15.400	65.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m2	104	0
;		TOTAL          	104	0
; Host name	rsat
; Job started	2025-04-03.124524
; Job done	2025-04-03.124524
; Seconds	0.14
;	user	0.14
;	system	0.02
;	cuser	0.1
;	csystem	0.01
