; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_7nt_mkv2_m1/peak-motifs_oligos_7nt_mkv2_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_7nt_mkv2_m1	D	3	17	ATGATGACTAATCGA	15.2
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GCGCTGAGTCAGCAT	8.4
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_7nt_mkv2_m1	R	-1	13	ATGCTGACTCAGCGC	12.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_7nt_mkv2_m1	D	-7	7	GAGATGACTAAGCAA	13.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	D	-12	2	ATGATGAGTCAGCAG	12.3
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_7nt_mkv2_m1	R	-12	2	CTGCTGACTCATCAT	10.7
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	D	7	21	TGGATGACTCAGCCG	10.1
ChrIII_A_nidulans_FGSC_A4:1668795-1668895(.)	site	oligos_7nt_mkv2_m1	R	7	21	CGGCTGAGTCATCCA	7.7
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	D	4	18	CGGCTGACTCAGCAT	9.8
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_7nt_mkv2_m1	R	4	18	ATGCTGAGTCAGCCG	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	D	1	15	AAGATTAGTAAGCAA	10.5
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_7nt_mkv2_m1	R	1	15	TTGCTTACTAATCTT	8.0
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	D	-7	7	CGGCTGAGTCAGCAG	8.6
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGCTGACTCAGCCG	11.4
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATGATGACTAAGCGA	16.1
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_7nt_mkv2_m1	D	1	15	CAAATGACTCAGCAA	11.2
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_7nt_mkv2_m1	D	10	24	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_7nt_mkv2_m1	D	-3	11	ATGATGACTAATCGA	15.2
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_7nt_mkv2_m1	D	-1	13	CAGATGACTAATCAG	11.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_7nt_mkv2_m1	D	-39	-25	AAGATTAGTAAGTGA	8.2
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	D	-10	4	GTGATGAGTCAGCAG	11.5
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_7nt_mkv2_m1	R	-10	4	CTGCTGACTCATCAC	10.8
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_7nt_mkv2_m1	R	-9	5	ATAATGACTAATCGA	13.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGATGACTAAGCGA	16.1
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	D	-13	1	AAGCTGAGTAAGCAG	10.9
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGCTTACTCAGCTT	8.0
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	-4	10	TGGCTGACTCAGCCA	9.5
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	-4	10	TGGCTGAGTCAGCCA	8.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	D	31	45	GCGATGAGTCAGCGA	11.1
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_7nt_mkv2_m1	R	31	45	TCGCTGACTCATCGC	9.3
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_7nt_mkv2_m1	R	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_7nt_mkv2_m1	D	0	14	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_7nt_mkv2_m1	R	-10	4	ATGATGACTAATCGA	15.2
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_7nt_mkv2_m1	D	9	23	ATGATGAGTAAGCCA	13.2
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	D	-6	8	GAGCTGAGTCAGCAG	9.0
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_7nt_mkv2_m1	R	-6	8	CTGCTGACTCAGCTC	10.3
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_7nt_mkv2_m1	D	-20	-6	ATAATGACTAATTGA	10.6
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_7nt_mkv2_m1	D	-5	9	ATAATGACTAAGCGA	14.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_7nt_mkv2_m1	D	8	22	ATAATGACTAAGCGA	14.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ATAATGACTAATCGA	13.7
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	D	-6	8	ATGCTTAGTAATCAA	9.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_7nt_mkv2_m1	R	-6	8	TTGATTACTAAGCAT	11.1
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	D	-7	7	ACGATGACTCATCAG	11.5
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_7nt_mkv2_m1	R	-7	7	CTGATGAGTCATCGT	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	D	-16	-2	TTGCTGAGTCATCAC	9.4
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_7nt_mkv2_m1	R	-16	-2	GTGATGACTCAGCAA	13.9
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	D	-12	2	TAGATGACTCAGCAA	12.5
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_7nt_mkv2_m1	R	-12	2	TTGCTGAGTCATCTA	9.3
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	-19	-5	ATGCTGACTAAGTAC	11.2
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_7nt_mkv2_m1	R	0	14	ATGCTGACTAAGATA	11.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGCTTACTCAGCGG	10.6
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_7nt_mkv2_m1	R	-15	-1	CCGCTGAGTAAGCAT	9.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	TAATTGACTAAGCAG	8.2
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_7nt_mkv2_m1	R	-6	8	ATGCTGACTAATAAT	10.2
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_7nt_mkv2_m1	R	-3	11	TAGATGACTAAGCAC	12.4
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	D	-38	-24	ATGCTGAGTCAGCTA	11.0
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_7nt_mkv2_m1	R	-38	-24	TAGCTGACTCAGCAT	10.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_7nt_mkv2_m1	D	-15	-1	ATGATGACTAAGCGC	14.6
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	D	-17	-3	TTGCTGAGTCATCGC	9.4
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_7nt_mkv2_m1	R	-17	-3	GCGATGACTCAGCAA	12.0
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GAGATGAGTAAGCGA	12.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	D	-14	0	CTGCTGAGTAAGCGG	11.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_7nt_mkv2_m1	R	-14	0	CCGCTTACTCAGCAG	8.0
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_7nt_mkv2_m1	D	-2	12	CAGCTGACTAAGCCC	10.3
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	D	-1	13	GTGATTAGTAAGCAG	10.0
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_7nt_mkv2_m1	R	-1	13	CTGCTTACTAATCAC	9.4
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTTACTCAGCAA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGCTGAGTAAGCAA	12.4
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_7nt_mkv2_m1	D	-14	0	ATACTGACTAAGCTA	12.3
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_7nt_mkv2_m1	D	-22	-8	ATAATGACTAATTGA	10.6
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_7nt_mkv2_m1	R	-13	1	GTGATGACTAAGCAA	14.9
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	D	-5	9	AAGCTGACTCATCAG	10.4
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_7nt_mkv2_m1	R	-5	9	CTGATGAGTCAGCTT	10.1
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	D	-11	3	TTGCTGAGTCATCAA	10.5
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_7nt_mkv2_m1	R	-11	3	TTGATGACTCAGCAA	13.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	R	-7	7	TTAATGACTAATCGA	12.8
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_7nt_mkv2_m1	D	4	18	TTAATTAGTAAGCTA	8.3
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_7nt_mkv2_m1	D	-24	-10	ATGCTGACTAAGACT	10.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	D	-13	1	CCGATGACTAATCAG	11.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_7nt_mkv2_m1	R	-13	1	CTGATTAGTCATCGG	8.6
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_7nt_mkv2_m1	D	-12	2	GTGATGACTAAGCGA	15.4
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_7nt_mkv2_m1	R	26	40	ATGCTGACTAAGACT	10.4
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv2_m1	15	4	0	-48.500	16.000	64.500	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv2_m1	83	0
;		TOTAL          	83	0
; Host name	rsat
; Job started	2025-04-03.124523
; Job done	2025-04-03.124523
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0.11
;	csystem	0.01
