; position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 8h_Se_N6 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
; Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
; Sequence file                	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
; Sequence format              	fasta
; Sequence type                	dna
; Output file                  	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
; Oligo length                 	2
; Occurrences counted  on a single  strands
; Conditions of applicability checked.
; Background model estimation: homogeneous repartition
; Sequence statistics:
;	Nb of sequences              	150
;	Sum of sequence lengths      	15000
;	Min sequence length          	0
;	Max sequence length          	100
;	Average sequence length      	100
;	Possible positions           	14850
; Oligonucleotide statistics:
;	Total occurrences    	10434
; Position interval parameters:
;	Position interval    	20
;	Number of windows    	6
;	Total positions      	14850
;	Degrees of freedom   	5
; K-mer clustering parameters:
;	Number of clusters   	0
;	Clustering method    	complete
; Position intervals:
;	window	[min,max]	mid	seq	occ
;	1	-3	[-59,-40]	-49.5	150	1500
;	2	-2	[-39,-20]	-29.5	150	3000
;	3	-1	[-19,0]	-9.5	150	3000
;	4	0	[1,20]	10.5	150	3000
;	5	1	[21,40]	30.5	150	3000
;	6	2	[41,60]	50.5	150	1350
;
; Column headers
;	1	seq            	pattern sequence
;	2	id             	pattern identifier
;	3	occ            	pattern occurrences
;	4	chi2           	observed chi-square
;	5	df             	degrees of freedom
;	6	Pval           	P-value (probability for one word to be a false positive)
;	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
;	8	sig            	Significance (sig = -log10(Eval))
;	9	rank           	rank of the pattern according to sorting criterion
;	10	-49.5          	occurrences in window	1	[-59,-40]
;	11	-29.5          	occurrences in window	2	[-39,-20]
;	12	-9.5           	occurrences in window	3	[-19,0]
;	13	10.5           	occurrences in window	4	[1,20]
;	14	30.5           	occurrences in window	5	[21,40]
;	15	50.5           	occurrences in window	6	[41,60]
#seq	id	occ	chi2	df	Pval	Eval	sig	rank	-49.5	-29.5	-9.5	10.5	30.5	50.5
cc	cc	637	16.1	5	6.6e-03	0.11	0.98	1	73	124	99	128	134	79
gg	gg	653	13.7	5	1.8e-02	0.28	0.55	2	75	127	113	112	159	67
aa	aa	724	13.3	5	2.1e-02	0.34	0.47	3	69	178	121	133	153	70
ca	ca	739	12.2	5	3.3e-02	0.52	0.28	4	77	139	120	161	158	84
tt	tt	656	10.0	5	7.4e-02	1.2	-0.07	5	82	145	135	107	128	59
ac	ac	545	9.0	5	1.1e-01	1.8	-0.25	6	66	102	98	98	120	61
tg	tg	632	7.3	5	2.0e-01	3.2	-0.50	7	78	128	141	112	118	55
ag	ag	757	6.2	5	2.9e-01	4.6	-0.67	8	69	143	147	179	149	70
at	at	726	4.9	5	4.3e-01	6.8	-0.83	9	82	150	141	133	142	78
tc	tc	658	3.2	5	6.7e-01	11	-1.03	10	60	124	126	140	143	65
ta	ta	685	3.0	5	7.0e-01	11	-1.05	11	72	143	145	131	125	69
cg	cg	442	2.7	5	7.5e-01	12	-1.08	12	43	85	90	82	102	40
gt	gt	516	2.2	5	8.2e-01	13	-1.12	13	57	95	110	109	102	43
ga	ga	616	2.0	5	8.5e-01	14	-1.13	14	66	118	126	115	130	61
ct	ct	737	1.7	5	8.8e-01	14	-1.15	15	80	148	159	141	144	65
gc	gc	711	1.4	5	9.2e-01	15	-1.17	16	78	143	143	150	136	61
; Host name	rsat
; Job started	2025-04-03.124452
; Job done	2025-04-03.124452
; Seconds	0.19
;	user	0.19
;	system	0.02
;	cuser	0
;	csystem	0
