; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m2	D	2	16	AATGATGACTAATCG	15.3
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m2	R	0	14	GATGCTGACTCAGCG	13.3
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	D	-8	6	TGAGATGACTAAGCA	8.6
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GTTGCTTAGTCATCT	8.4
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	D	-13	1	AATGATGAGTCAGCA	10.9
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACTGCTGACTCATCA	13.4
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	D	3	17	TCGGCTGACTCAGCA	8.2
ChrIII_A_nidulans_FGSC_A4:1881384-1881484(.)	site	oligos_6nt_mkv2_m2	R	5	19	AATGCTGAGTCAGCC	10.7
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTTACTAATCT	11.2
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m2	R	-6	8	CCTGCTGACTCAGCC	10.9
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATGATGACTAAGCG	14.5
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	-23	-9	AAAGCTTACTAATGG	8.2
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	D	0	14	ACAAATGACTCAGCA	7.9
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m2	R	2	16	GTTGCTGAGTCATTT	8.9
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m2	D	9	23	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m2	D	-4	10	AATGATGACTAATCG	15.3
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m2	D	-2	12	TCAGATGACTAATCA	10.6
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m2	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	D	-11	3	TGTGATGAGTCAGCA	8.1
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m2	R	-9	5	GCTGCTGACTCATCA	12.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m2	R	-8	6	AATAATGACTAATCG	13.2
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGATGACTAAGCG	14.5
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	D	-14	0	CAAGCTGAGTAAGCA	9.4
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TCTGCTTACTCAGCT	8.6
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	D	-5	9	GTGGCTGACTCAGCC	7.7
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m2	R	32	46	GTCGCTGACTCATCG	12.0
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m2	R	-4	10	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m2	D	-1	13	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m2	R	-9	5	AATGATGACTAATCG	15.3
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m2	D	8	22	AATGATGAGTAAGCC	11.3
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ACTGCTGACTCAGCT	12.0
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m2	D	-21	-7	AATAATGACTAATTG	11.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m2	D	-6	8	AATAATGACTAAGCG	12.3
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m2	D	7	21	AATAATGACTAAGCG	12.3
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m2	D	-8	6	AATAATGACTAATCG	13.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	D	-7	7	TATGCTTAGTAATCA	10.2
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m2	R	-5	9	ATTGATTACTAAGCA	10.9
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-42	-28	CATCCTGACTAAGAA	8.6
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	D	-8	6	CACGATGACTCATCA	11.3
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m2	R	-6	8	GCTGATGAGTCATCG	11.0
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CTTGCTGAGTCATCA	10.6
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m2	R	-15	-1	AGTGATGACTCAGCA	10.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	D	-13	1	ATAGATGACTCAGCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m2	R	-11	3	GTTGCTGAGTCATCT	10.5
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	-18	-4	AATGCTGACTAAGTA	12.8
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m2	R	1	15	AATGCTGACTAAGAT	12.4
ChrI_A_nidulans_FGSC_A4:2695806-2695906(.)	site	oligos_6nt_mkv2_m2	R	-11	3	ACAAATGACTAATAT	7.9
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m2	D	11	25	CCTGCTTACTGAGCA	8.2
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	TATGCTTACTCAGCG	10.7
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	-14	0	TCCGCTGAGTAAGCA	9.3
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m2	R	35	49	TCCGCTGACTGATCC	8.8
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m2	R	-5	9	CATGCTGACTAATAA	12.8
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m2	R	-2	12	ATAGATGACTAAGCA	10.8
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	D	-39	-25	GATGCTGAGTCAGCT	10.3
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m2	R	-37	-23	TTAGCTGACTCAGCA	9.2
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m2	D	-16	-2	AATGATGACTAAGCG	14.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	D	-18	-4	GTTGCTGAGTCATCG	11.9
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m2	R	-16	-2	AGCGATGACTCAGCA	8.8
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	D	-2	12	AGAGATGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m2	R	0	14	ATCGCTTACTCATCT	8.9
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	TCTGCTGAGTAAGCG	11.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m2	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m2	D	-3	11	CCAGCTGACTAAGCC	9.8
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	D	-2	12	CGTGATTAGTAAGCA	7.7
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m2	R	0	14	TCTGCTTACTAATCA	11.2
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	D	-12	2	ATTGCTTACTCAGCA	10.3
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m2	R	-10	4	ATTGCTGAGTAAGCA	11.8
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m2	D	-15	-1	AATACTGACTAAGCT	11.9
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m2	D	-23	-9	AATAATGACTAATTG	11.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	D	-14	0	TTTGCTTAGTCATCA	8.4
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m2	R	-12	2	TGTGATGACTAAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	D	-6	8	GAAGCTGACTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m2	R	-4	10	ACTGATGAGTCAGCT	9.8
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	D	-12	2	GTTGCTGAGTCATCA	11.2
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m2	R	-10	4	TTTGATGACTCAGCA	11.0
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m2	R	-6	8	ATTAATGACTAATCG	12.4
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m2	D	-17	-3	CATGCTGACTGATAC	9.9
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m2	D	-25	-11	GATGCTGACTAAGAC	11.9
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	R	-21	-7	TCTGCTGACTGATAC	9.0
ChrVI_A_nidulans_FGSC_A4:1511611-1511711(.)	site	oligos_6nt_mkv2_m2	D	-3	11	AACGCTGACAAATCT	9.4
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	D	-14	0	ACCGATGACTAATCA	12.6
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m2	R	-12	2	ACTGATTAGTCATCG	9.9
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m2	D	-13	1	GGTGATGACTAAGCG	12.0
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m2	R	27	41	GATGCTGACTAAGAC	11.9
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m2	15	4	0	-45.200	15.700	60.900	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m2	85	0
;		TOTAL          	85	0
; Host name	rsat
; Job started	2025-04-03.124520
; Job done	2025-04-03.124520
; Seconds	0.15
;	user	0.15
;	system	0.01
;	cuser	0.1
;	csystem	0
