; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/oligos_6nt_mkv2/peak-motifs_oligos-2str-noov_6nt_mkv2_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	25
;

; assembly # 1	seed: agtcag	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
ctgagt.....	.....actcag	0.48
.tgagtc....	....gactca.	3.28
..gagtca...	...tgactc..	5.92
...agtcag..	..ctgact...	5.96
....gtcagc.	.gctgac....	4.59
.....tcagca	tgctga.....	2.81
ctgagtcagca	tgctgactcag	5.96	best consensus

; assembly # 2	seed: gactaa	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
tgctga.....	.....tcagca	2.81
.gctgac....	....gtcagc.	4.59
..ctgact...	...agtcag..	5.96
...tgacta..	..tagtca...	4.59
....gactaa.	.ttagtc....	4.62
.....actaat	attagt.....	2.03
tgctgactaat	attagtcagca	5.96	best consensus

; assembly # 3	seed: gcttac	6 assembled patterns	length 11
;    alignt	    rev_cpl	score
tgctta.....	.....taagca	2.16
.gcttac....	....gtaagc.	4.01
..cttact...	...agtaag..	2.83
...ttacta..	..tagtaa...	2.67
....tactaa.	.ttagta....	3.23
.....actaat	attagt.....	2.03
tgcttactaat	attagtaagca	4.01	best consensus

; assembly # 4	seed: gatgac	5 assembled patterns	length 10
;   alignt	   rev_cpl	score
gatgac....	....gtcatc	2.79
.atgact...	...agtcat.	1.35
..tgactc..	..gagtca..	5.92
...gactca.	.tgagtc...	3.28
....actcag	ctgagt....	0.48
gatgactcag	ctgagtcatc	5.92	best consensus

; assembly # 5	seed: actaag	8 assembled patterns	length 13
;      alignt	      rev_cpl	score
tgctga.......	.......tcagca	2.81
.gctgac......	......gtcagc.	4.59
..ctgact.....	.....agtcag..	5.96
...tgacta....	....tagtca...	4.59
....gactaa...	...ttagtc....	4.62
.....actaag..	..cttagt.....	1.57
......ctaagc.	.gcttag......	0.33
.......taagca	tgctta.......	2.16
tgctgactaagca	tgcttagtcagca	5.96	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 6.
; Host name	rsat
; Job started	2025-04-03.124455
; Job done	2025-04-03.124456
; Seconds	0.99
;	user	0.99
;	system	0.01
;	cuser	0
;	csystem	0
