; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.26461
;		c	0.24461
;		g	0.23830
;		t	0.25248
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	-9	5	CTAGCTTACTAAATG	12.7
ChrIII_A_nidulans_FGSC_A4:209815-209915(.)	site	oligos_6nt_mkv2_m3	D	2	16	AATGATGACTAATCG	11.6
ChrIII_A_nidulans_FGSC_A4:261780-261880(.)	site	oligos_6nt_mkv2_m3	R	0	14	GATGCTGACTCAGCG	9.7
ChrIII_A_nidulans_FGSC_A4:708640-708740(.)	site	oligos_6nt_mkv2_m3	R	-6	8	GTTGCTTAGTCATCT	9.0
ChrIII_A_nidulans_FGSC_A4:1133408-1133508(.)	site	oligos_6nt_mkv2_m3	R	-11	3	ACTGCTGACTCATCA	11.4
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	D	0	14	TAAGATTAGTAAGCA	7.6
ChrIII_A_nidulans_FGSC_A4:2542454-2542554(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTTACTAATCT	12.8
ChrIII_A_nidulans_FGSC_A4:3063985-3064085(.)	site	oligos_6nt_mkv2_m3	R	-6	8	CCTGCTGACTCAGCC	8.8
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	D	-10	4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:73725-73825(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	-23	-9	AAAGCTTACTAATGG	10.7
ChrII_A_nidulans_FGSC_A4:242647-242747(.)	site	oligos_6nt_mkv2_m3	R	2	16	GTTGCTGAGTCATTT	8.0
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:919677-919777(.)	site	oligos_6nt_mkv2_m3	D	9	23	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	CTAGCTTACTAAATG	12.7
ChrII_A_nidulans_FGSC_A4:924615-924715(.)	site	oligos_6nt_mkv2_m3	D	-4	10	AATGATGACTAATCG	11.6
ChrII_A_nidulans_FGSC_A4:1412511-1412611(.)	site	oligos_6nt_mkv2_m3	D	-2	12	TCAGATGACTAATCA	9.8
ChrII_A_nidulans_FGSC_A4:1476944-1477044(.)	site	oligos_6nt_mkv2_m3	R	-38	-24	ATCACTTACTAATCT	7.8
ChrII_A_nidulans_FGSC_A4:2986375-2986475(.)	site	oligos_6nt_mkv2_m3	R	-9	5	GCTGCTGACTCATCA	10.1
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	CTCGCTTAGTCATCA	8.7
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-16	-2	AATGATGACTAAGCG	10.5
ChrII_A_nidulans_FGSC_A4:3802147-3802247(.)	site	oligos_6nt_mkv2_m3	R	-5	9	TTAGCTTACTGAATG	9.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	-8	6	AATAATGACTAATCG	7.8
ChrIV_A_nidulans_FGSC_A4:154106-154206(.)	site	oligos_6nt_mkv2_m3	R	3	17	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	D	-20	-6	CTCGCTTAGTCATCA	8.7
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGATGACTAAGCG	10.5
ChrIV_A_nidulans_FGSC_A4:175051-175151(.)	site	oligos_6nt_mkv2_m3	R	-7	7	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	D	-14	0	CAAGCTGAGTAAGCA	8.8
ChrIV_A_nidulans_FGSC_A4:391146-391246(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TCTGCTTACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:624392-624492(.)	site	oligos_6nt_mkv2_m3	R	32	46	GTCGCTGACTCATCG	9.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	D	-6	8	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:721457-721557(.)	site	oligos_6nt_mkv2_m3	R	7	21	ACAGCTTACTAAATA	12.3
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-12	2	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1061234-1061334(.)	site	oligos_6nt_mkv2_m3	D	-1	13	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	-9	5	AATGATGACTAATCG	11.6
ChrIV_A_nidulans_FGSC_A4:1111262-1111362(.)	site	oligos_6nt_mkv2_m3	R	2	16	CTAGCTTACTAAATG	12.7
ChrIV_A_nidulans_FGSC_A4:1216534-1216634(.)	site	oligos_6nt_mkv2_m3	R	10	24	CTGGCTTACTCATCA	9.8
ChrIV_A_nidulans_FGSC_A4:1967798-1967898(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ACTGCTGACTCAGCT	9.4
ChrIV_A_nidulans_FGSC_A4:2692267-2692367(.)	site	oligos_6nt_mkv2_m3	D	-32	-18	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2767230-2767330(.)	site	oligos_6nt_mkv2_m3	R	-4	10	CTCGCTTAGTCATTA	8.6
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	D	-4	10	CTAGCTTACTAAATA	13.0
ChrIV_A_nidulans_FGSC_A4:2780757-2780857(.)	site	oligos_6nt_mkv2_m3	R	9	23	CTCGCTTAGTCATTA	8.6
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-19	-5	CTAGCTTACTAAATA	13.0
ChrI_A_nidulans_FGSC_A4:169876-169976(.)	site	oligos_6nt_mkv2_m3	D	-8	6	AATAATGACTAATCG	7.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TATGCTTAGTAATCA	10.8
ChrI_A_nidulans_FGSC_A4:830603-830703(.)	site	oligos_6nt_mkv2_m3	R	-5	9	ATTGATTACTAAGCA	11.7
ChrI_A_nidulans_FGSC_A4:1367603-1367703(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CACGATGACTCATCA	8.5
ChrI_A_nidulans_FGSC_A4:1608149-1608249(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CTTGCTGAGTCATCA	9.7
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	D	-13	1	ATAGATGACTCAGCA	8.8
ChrI_A_nidulans_FGSC_A4:1691823-1691923(.)	site	oligos_6nt_mkv2_m3	R	-11	3	GTTGCTGAGTCATCT	8.1
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	-18	-4	AATGCTGACTAAGTA	12.0
ChrI_A_nidulans_FGSC_A4:2369050-2369150(.)	site	oligos_6nt_mkv2_m3	R	1	15	AATGCTGACTAAGAT	10.2
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	11	25	CCTGCTTACTGAGCA	10.1
ChrI_A_nidulans_FGSC_A4:3272919-3273019(.)	site	oligos_6nt_mkv2_m3	D	27	41	TAAGCTTACGAATCA	9.5
ChrI_A_nidulans_FGSC_A4:3739401-3739501(.)	site	oligos_6nt_mkv2_m3	D	-8	6	CCAGCTTAGTAAACC	8.9
ChrVIII_A_nidulans_FGSC_A4:895968-896068(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	TATGCTTACTCAGCG	10.9
ChrVIII_A_nidulans_FGSC_A4:1311964-1312064(.)	site	oligos_6nt_mkv2_m3	R	-5	9	CATGCTGACTAATAA	12.0
ChrVIII_A_nidulans_FGSC_A4:1570970-1571070(.)	site	oligos_6nt_mkv2_m3	R	-2	12	ATAGATGACTAAGCA	10.2
ChrVIII_A_nidulans_FGSC_A4:2521812-2521912(.)	site	oligos_6nt_mkv2_m3	R	-37	-23	TTAGCTGACTCAGCA	9.8
ChrVIII_A_nidulans_FGSC_A4:3373009-3373109(.)	site	oligos_6nt_mkv2_m3	D	-16	-2	AATGATGACTAAGCG	10.5
ChrVIII_A_nidulans_FGSC_A4:3377893-3377993(.)	site	oligos_6nt_mkv2_m3	D	-18	-4	GTTGCTGAGTCATCG	9.1
ChrVIII_A_nidulans_FGSC_A4:3936747-3936847(.)	site	oligos_6nt_mkv2_m3	R	0	14	ATCGCTTACTCATCT	10.2
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	TCTGCTGAGTAAGCG	8.5
ChrVIII_A_nidulans_FGSC_A4:3966635-3966735(.)	site	oligos_6nt_mkv2_m3	R	-13	1	GCCGCTTACTCAGCA	8.1
ChrVIII_A_nidulans_FGSC_A4:4620730-4620830(.)	site	oligos_6nt_mkv2_m3	D	-3	11	CCAGCTGACTAAGCC	9.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	D	-2	12	CGTGATTAGTAAGCA	7.6
ChrVII_A_nidulans_FGSC_A4:146517-146617(.)	site	oligos_6nt_mkv2_m3	R	0	14	TCTGCTTACTAATCA	12.8
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	D	-12	2	ATTGCTTACTCAGCA	11.9
ChrVII_A_nidulans_FGSC_A4:1173852-1173952(.)	site	oligos_6nt_mkv2_m3	R	-10	4	ATTGCTGAGTAAGCA	10.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-26	-12	ATAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	D	-15	-1	AATACTGACTAAGCT	7.6
ChrVII_A_nidulans_FGSC_A4:1292728-1292828(.)	site	oligos_6nt_mkv2_m3	R	-13	1	ATAGCTTAGTCAGTA	9.0
ChrVII_A_nidulans_FGSC_A4:1935153-1935253(.)	site	oligos_6nt_mkv2_m3	D	-34	-20	CTAGCTTACTAAATA	13.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	D	-14	0	TTTGCTTAGTCATCA	10.0
ChrVII_A_nidulans_FGSC_A4:2121987-2122087(.)	site	oligos_6nt_mkv2_m3	R	-12	2	TGTGATGACTAAGCA	8.1
ChrVII_A_nidulans_FGSC_A4:2889234-2889334(.)	site	oligos_6nt_mkv2_m3	D	-6	8	GAAGCTGACTCATCA	10.1
ChrVII_A_nidulans_FGSC_A4:2935863-2935963(.)	site	oligos_6nt_mkv2_m3	D	-7	7	TCCGCTTACTAATGA	8.9
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	D	-12	2	GTTGCTGAGTCATCA	9.0
ChrVII_A_nidulans_FGSC_A4:3585476-3585576(.)	site	oligos_6nt_mkv2_m3	R	-10	4	TTTGATGACTCAGCA	8.9
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	-6	8	ATTAATGACTAATCG	8.3
ChrVII_A_nidulans_FGSC_A4:3620034-3620134(.)	site	oligos_6nt_mkv2_m3	R	5	19	CTAGCTTACTAATTA	13.6
ChrVII_A_nidulans_FGSC_A4:4386158-4386258(.)	site	oligos_6nt_mkv2_m3	D	-17	-3	CATGCTGACTGATAC	8.5
ChrVI_A_nidulans_FGSC_A4:792333-792433(.)	site	oligos_6nt_mkv2_m3	D	-25	-11	GATGCTGACTAAGAC	9.0
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	D	-14	0	ACCGATGACTAATCA	9.5
ChrV_A_nidulans_FGSC_A4:189788-189888(.)	site	oligos_6nt_mkv2_m3	R	-12	2	ACTGATTAGTCATCG	8.5
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-24	-10	ACTGCTTACTAGGTG	8.7
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	D	-13	1	GGTGATGACTAAGCG	7.8
ChrV_A_nidulans_FGSC_A4:3331030-3331130(.)	site	oligos_6nt_mkv2_m3	R	-11	3	CTCGCTTAGTCATCA	8.7
ChrV_A_nidulans_FGSC_A4:3365025-3365125(.)	site	oligos_6nt_mkv2_m3	R	27	41	GATGCTGACTAAGAC	9.0
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv2_m3	15	4	0	-45.300	14.800	60.100	a:0.265 c:0.245 g:0.238 t:0.252 
; Number of sequences scanned	150
; Sum of sequence lengths	15000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv2_m3	91	0
;		TOTAL          	91	0
; Host name	rsat
; Job started	2025-04-03.124521
; Job done	2025-04-03.124521
; Seconds	0.14
;	user	0.14
;	system	0.01
;	cuser	0.1
;	csystem	0.02
