/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 8h_Se_N6 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124448_2025-04-03.124448_OhsrJC/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	150
	Sum of sequence lengths      	15000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	14850
 Oligonucleotide statistics:
	Total occurrences    	10434
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	14850
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	150	1500
	2	-2	[-39,-20]	-29.5	150	3000
	3	-1	[-19,0]	-9.5	150	3000
	4	0	[1,20]	10.5	150	3000
	5	1	[21,40]	30.5	150	3000
	6	2	[41,60]	50.5	150	1350

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
cc cc 637 16.1 5 6.6e-03 0.11 0.98 1 73 124 99 128 134 79
gg gg 653 13.7 5 1.8e-02 0.28 0.55 2 75 127 113 112 159 67
aa aa 724 13.3 5 2.1e-02 0.34 0.47 3 69 178 121 133 153 70
ca ca 739 12.2 5 3.3e-02 0.52 0.28 4 77 139 120 161 158 84
tt tt 656 10.0 5 7.4e-02 1.2 -0.07 5 82 145 135 107 128 59
ac ac 545 9.0 5 1.1e-01 1.8 -0.25 6 66 102 98 98 120 61
tg tg 632 7.3 5 2.0e-01 3.2 -0.50 7 78 128 141 112 118 55
ag ag 757 6.2 5 2.9e-01 4.6 -0.67 8 69 143 147 179 149 70
at at 726 4.9 5 4.3e-01 6.8 -0.83 9 82 150 141 133 142 78
tc tc 658 3.2 5 6.7e-01 11 -1.03 10 60 124 126 140 143 65
ta ta 685 3.0 5 7.0e-01 11 -1.05 11 72 143 145 131 125 69
cg cg 442 2.7 5 7.5e-01 12 -1.08 12 43 85 90 82 102 40
gt gt 516 2.2 5 8.2e-01 13 -1.12 13 57 95 110 109 102 43
ga ga 616 2.0 5 8.5e-01 14 -1.13 14 66 118 126 115 130 61
ct ct 737 1.7 5 8.8e-01 14 -1.15 15 80 148 159 141 144 65
gc gc 711 1.4 5 9.2e-01 15 -1.17 16 78 143 143 150 136 61 
 Host name	rsat
 Job started	2025-04-03.124452
 Job done	2025-04-03.124452
 Seconds	0.19
	user	0.19
	system	0.02
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