/var/www/html/rsat/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 8h_Se_N7 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	150
	Sum of sequence lengths      	15000
	Min sequence length          	0
	Max sequence length          	100
	Average sequence length      	100
	Possible positions           	14850
 Oligonucleotide statistics:
	Total occurrences    	9984
 Position interval parameters:
	Position interval    	20
	Number of windows    	6
	Total positions      	14850
	Degrees of freedom   	5
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-3	[-59,-40]	-49.5	150	1500
	2	-2	[-39,-20]	-29.5	150	3000
	3	-1	[-19,0]	-9.5	150	3000
	4	0	[1,20]	10.5	150	3000
	5	1	[21,40]	30.5	150	3000
	6	2	[41,60]	50.5	150	1350

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-49.5          	occurrences in window	1	[-59,-40]
	11	-29.5          	occurrences in window	2	[-39,-20]
	12	-9.5           	occurrences in window	3	[-19,0]
	13	10.5           	occurrences in window	4	[1,20]
	14	30.5           	occurrences in window	5	[21,40]
	15	50.5           	occurrences in window	6	[41,60]
seq id occ chi2 df Pval Eval sig rank -49.5 -29.5 -9.5 10.5 30.5 50.5
aa aa 657 16.2 5 6.3e-03 0.1 1.00 1 61 165 116 108 145 62
gg gg 629 14.3 5 1.4e-02 0.22 0.66 2 82 136 99 116 131 65
cc cc 599 13.2 5 2.2e-02 0.35 0.45 3 58 108 102 117 146 68
tc tc 617 10.7 5 5.8e-02 0.94 0.03 4 61 103 124 117 140 72
cg cg 449 9.0 5 1.1e-01 1.7 -0.24 5 62 89 89 75 91 43
tg tg 617 8.8 5 1.2e-01 1.9 -0.27 6 57 137 147 111 117 48
ga ga 626 6.7 5 2.4e-01 3.9 -0.59 7 82 127 120 118 121 58
ta ta 639 6.6 5 2.6e-01 4.1 -0.61 8 73 146 126 112 120 62
ca ca 680 5.8 5 3.3e-01 5.3 -0.72 9 62 127 126 158 143 64
gc gc 674 5.5 5 3.5e-01 5.7 -0.75 10 74 129 148 148 122 53
ct ct 686 5.2 5 3.9e-01 6.3 -0.80 11 76 122 155 132 135 66
gt gt 520 4.7 5 4.6e-01 7.3 -0.87 12 54 123 104 94 99 46
ac ac 526 3.6 5 6.1e-01 9.7 -0.99 13 64 102 106 107 96 51
tt tt 640 3.2 5 6.7e-01 11 -1.03 14 66 139 122 125 121 67
at at 669 2.9 5 7.2e-01 12 -1.06 15 70 146 129 122 142 60
ag ag 756 2.6 5 7.6e-01 12 -1.09 16 83 160 141 159 144 69 
 Host name	rsat
 Job started	2025-04-03.124536
 Job done	2025-04-03.124536
 Seconds	0.17
	user	0.17
	system	0.01
	cuser	0
;	csystem	0