RSAT - peak-motifs result

Analysis: 8h_Se_N7 (03/04/2025 12:46)

peak-motifs  -v 1 -title 8h_Se_N7 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tgctgactcagca (sig=9.38; e-value=4.2e-10) RC: tgctgagtcagca oligos_6nt_mkv2_m2 assembly: gcttacta (sig=4.69; e-value=2e-05) RC: tagtaagc oligos_6nt_mkv2_m3 assembly: gcttagtcagca (sig=9.38; e-value=4.2e-10) RC: tgctgactaagc oligos_6nt_mkv2_m4 assembly: gcacgtgc (sig=3.20; e-value=0.00063) RC: gcacgtgc oligos_6nt_mkv2_m5 assembly: tgctgagtcatc (sig=9.13; e-value=7.4e-10) RC: gatgactcagca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: atgctgactcagcat (sig=19.04; e-value=9.1e-20) RC: atgctgagtcagcat oligos_7nt_mkv2_m2 assembly: gatgactaagc (sig=8.70; e-value=2e-09) RC: gcttagtcatc oligos_7nt_mkv2_m3 assembly: ttagtaagca (sig=7.46; e-value=3.5e-08) RC: tgcttactaa oligos_7nt_mkv2_m4 assembly: atgctgactcatc (sig=19.04; e-value=9.1e-20) RC: gatgagtcagcat oligos_7nt_mkv2_m5 assembly: tcacgtga (sig=1.58; e-value=0.026) RC: tcacgtga	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=9.38; evalue=4.2e-10 rhtGCTGAsTMAGCarb VYTGCTKASTCAGCADY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 58 (38.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624428-624528(.)) Mean nb of predicted sites per peak: 1.91	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=4.69; evalue=2e-05 ywGCTTACTmad HTKAGTAAGCWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 52 (34.67%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3331021-3331121(.)) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=9.38; evalue=4.2e-10 yyGMTkAGTCAKCAky RMTGMTGACTMAKCRR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (39.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624428-624528(.)) Mean nb of predicted sites per peak: 1.69	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=3.20; evalue=0.00063 mrgCACGTGcyt ARGCACGTGCYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (10.00%) Max nb of predicted sites per peak: 2  (ChrV_A_nidulans_FGSC_A4:3075547-3075647(.)) Mean nb of predicted sites per peak: 1.93	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=9.13; evalue=7.4e-10 gytGCTGASTCAkCak MTGMTGASTCAGCARC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 57 (38.00%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624428-624528(.)) Mean nb of predicted sites per peak: 1.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=19.04; evalue=9.1e-20 rrmtGCTGASTCAGCarby RVYTGCTGASTCAGCAKYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (39.33%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624428-624528(.)) Mean nb of predicted sites per peak: 1.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=8.70; evalue=2e-09 atGmTGACTmAKCrr YYGMTKAGTCAKCAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 61 (40.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624428-624528(.)) Mean nb of predicted sites per peak: 1.62	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=7.46; evalue=3.5e-08 rhTkAGTMAGCwrk MYWGCTKACTMADY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 55 (36.67%) Max nb of predicted sites per peak: 3  (ChrIV_A_nidulans_FGSC_A4:175041-175141(.)) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=19.04; evalue=9.1e-20 rrmtGMTGASTMAkCar YTGMTKASTCAKCAKYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 61 (40.67%) Max nb of predicted sites per peak: 4  (ChrIV_A_nidulans_FGSC_A4:624428-624528(.)) Mean nb of predicted sites per peak: 1.82	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.58; evalue=0.026 rrTCACGTGAyy RRTCACGTGAYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (6.67%) Max nb of predicted sites per peak: 4  (ChrIII_A_nidulans_FGSC_A4:1850244-1850344(.)) Mean nb of predicted sites per peak: 2.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title 8h_Se_N7 -i $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/03/peak-motifs.2025-04-03.124532_2025-04-03.124532_W6xMnm/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab