peak-motifs ING1

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=212.43; evalue=3.7e-213

cmtAAACCCTAawy

RWTTAGGGTTTAKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10260 (29.02%)
Max nb of predicted sites per peak: 21
(5:4865477-4866623(.))
Mean nb of predicted sites per peak: 2.08

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=133.42; evalue=3.8e-134

rmTAAAAAGGaw

WTCCTTTTTAKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1107 (3.13%)
Max nb of predicted sites per peak: 8
(4:687152-687993(.))
Mean nb of predicted sites per peak: 1.55

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=126.11; evalue=7.8e-127

gmCGGGTCrr

YYGACCCGKC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2892 (8.18%)
Max nb of predicted sites per peak: 30
(5:23056440-23057754(.))
Mean nb of predicted sites per peak: 2.25

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=103.84; evalue=1.4e-104

awACAGAGaa

TTCTCTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9712 (27.47%)
Max nb of predicted sites per peak: 24
(1:19052144-19053802(.))
Mean nb of predicted sites per peak: 1.96

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=86.44; evalue=3.6e-87

wwAGGCCCAttw

WAATGGGCCTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4777 (13.51%)
Max nb of predicted sites per peak: 21
(5:25567724-25568664(.))
Mean nb of predicted sites per peak: 2.73

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=300; evalue=1e-300

mgmcGacGAAGAAGagragrr

YYCTYCTCTTCTTCGTCGKCK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11150 (31.54%)
Max nb of predicted sites per peak: 33
(2:9353996-9355317(.))
Mean nb of predicted sites per peak: 3.02

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=300; evalue=1e-300

rrgagrtCGGAGAAGAAGvr

YBCTTCTTCTCCGAYCTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9731 (27.53%)
Max nb of predicted sites per peak: 21
(5:58256-60676(.))
Mean nb of predicted sites per peak: 2.15

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=300; evalue=1e-300

yyCttCtTCtCCGcCGyck

MGRCGGCGGAGAAGAAGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11015 (31.16%)
Max nb of predicted sites per peak: 39
(3:9460536-9461469(.))
Mean nb of predicted sites per peak: 3.04

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=300; evalue=1e-300

rrgaartcGAAGAAGagragrr

YYCTYCTCTTCTTCGAYTTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9846 (27.85%)
Max nb of predicted sites per peak: 24
(1:26935974-26936371(.))
Mean nb of predicted sites per peak: 2.30

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=54.06; evalue=8.7e-55

cgaCGGCGAcg

CGTCGCCGTCG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9659 (27.32%)
Max nb of predicted sites per peak: 24
(2:175308-176472(.))
Mean nb of predicted sites per peak: 2.48

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv5_m1

k-mer sig=94.65; evalue=2.2e-95

amCAAGAACma

TKGTTCTTGKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4479 (12.67%)
Max nb of predicted sites per peak: 12
(5:19624115-19625581(.))
Mean nb of predicted sites per peak: 1.74

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv5_m2

k-mer sig=89.67; evalue=2.1e-90

tyCGATTTCGay

RTCGAAATCGRA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2253 (6.37%)
Max nb of predicted sites per peak: 12
(1:1215647-1216632(.))
Mean nb of predicted sites per peak: 1.57

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv5_m3

k-mer sig=77.07; evalue=8.5e-78

maAAACCCTAra

TYTAGGGTTTTK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10042 (28.40%)
Max nb of predicted sites per peak: 21
(3:17444910-17445760(.))
Mean nb of predicted sites per peak: 2.07

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv5_m4

k-mer sig=75.02; evalue=9.5e-76

ayCATCtTCry

RYGAAGATGRT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6878 (19.46%)
Max nb of predicted sites per peak: 16
(4:900082-901277(.))
Mean nb of predicted sites per peak: 1.84

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv5_m5

k-mer sig=70.09; evalue=8.1e-71

kyCGTCtTCky

RMGAAGACGRM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7124 (20.15%)
Max nb of predicted sites per peak: 18
(5:84740-85928(.))
Mean nb of predicted sites per peak: 2.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=31.20; evalue=6.3e-32

yyTCTTCTTCTCtCtyy

RRAGAGAGAAGAAGARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10943 (30.95%)
Max nb of predicted sites per peak: 24
(5:582995-584012(.))
Mean nb of predicted sites per peak: 2.39

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=30.15; evalue=7.1e-31

cmaAAACCCTAawy

RWTTAGGGTTTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10225 (28.92%)
Max nb of predicted sites per peak: 28
(1:10299855-10300416(.))
Mean nb of predicted sites per peak: 2.09

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=31.20; evalue=6.3e-32

rmGaaatCGAAGAAGAarvv

BBYTTCTTCTTCGATTTCKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8718 (24.66%)
Max nb of predicted sites per peak: 24
(3:19304278-19305376(.))
Mean nb of predicted sites per peak: 2.15

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=31.20; evalue=6.3e-32

graatCGGAGAAGAAGarr

YYTCTTCTTCTCCGATTYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9871 (27.92%)
Max nb of predicted sites per peak: 20
(4:6374568-6376197(.))
Mean nb of predicted sites per peak: 2.17

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=24.18; evalue=6.6e-25

ymGAAATCGATCTCsv

BSGAGATCGATTTCKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2624 (7.42%)
Max nb of predicted sites per peak: 16
(5:3343149-3343702(.))
Mean nb of predicted sites per peak: 1.82

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: ING1 (07/04/2025 20:03)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results