RSAT - matrix-clustering result

Analysis: oct4_motifs_found_in_chen_2008_peak_sets (08/04/2025 09:39)

Results Summary

Nb Input motifs Nb Input collections Nb Clusters Found Download
Root motifs 		Complete results [zip] Parameters used
Linkage method Similarity metric Thresholds to partition the tree
22 1 4 Download Download
average Ncor Ncor = 0.4
cor = 0.6
Logo Forest (dynamic browsing)
Logo Forest (rapid overview - low image quality)
Clusters Summary
Individual Cluster View
Individual Motif View
Heatmap View
Additional Files

Exported files

File Description
Pairwise comparison This table shows the pairwise comparison between all the input motifs using different metrics. This is the compare-matrices result.
Matrix description This table shows information of each input motif.
Cluster-wise Motif Files [zip] One TRANSFAC file is generated for each cluster including all the input motifs grouped in the corresponding cluster.
Root motifs A file with the root matrix of each cluster.
Motif collections per cluster A tab separated file containing the counts of motif of each collection on each cluster.
Clusters A tab separated file containing the clusters and their correspondng motifs.
Central motifs IDs A tab separated file containing the central motif, that one who is the most similar to all the others motif in the same cluster.
Central motifs (in TRANSFAC format) A transfac file containing the central motif, that one who is the most similar to all the others motif within the same cluster.
Input motifs The input motifs analyzed with matrix-clustering.