peak-motifs H3K9

motif discovery

oligos_6nt_mkv3

oligos_6nt_mkv3_m1	assembly: gccaccaccgt (sig=67.98; e-value=1e-68)	RC: acggtggtggc
oligos_6nt_mkv3_m2	assembly: gccgccgc (sig=61.13; e-value=7.4e-62)	RC: gcggcggc
oligos_6nt_mkv3_m3	assembly: aacagaga (sig=56.44; e-value=3.6e-57)	RC: tctctgtt
oligos_6nt_mkv3_m4	assembly: aaaccctaaa (sig=51.34; e-value=4.6e-52)	RC: tttagggttt
oligos_6nt_mkv3_m5	assembly: agattcat (sig=40.33; e-value=4.7e-41)	RC: atgaatct

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

positions_6nt_m1	assembly: atataaa (sig=3.28; e-value=0.00052)	RC: tttatat
positions_6nt_m2	assembly: aaaata (sig=0.97; e-value=0.11)	RC: tatttt
positions_6nt_m3	assembly: aataat (sig=0.81; e-value=0.15)	RC: attatt
positions_6nt_m4	assembly: cggaga (sig=0.36; e-value=0.44)	RC: tctccg
positions_6nt_m5	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_mkv4

oligos_7nt_mkv4_m1	assembly: ctaaaccctaa (sig=41.63; e-value=2.3e-42)	RC: ttagggtttag
oligos_7nt_mkv4_m2	assembly: gaaacagagc (sig=30.02; e-value=9.5e-31)	RC: gctctgtttc
oligos_7nt_mkv4_m3	assembly: caagaaca (sig=26.05; e-value=8.9e-27)	RC: tgttcttg
oligos_7nt_mkv4_m4	assembly: tcaaatcc (sig=18.01; e-value=9.8e-19)	RC: ggatttga
oligos_7nt_mkv4_m5	assembly: tcttcctc (sig=15.26; e-value=5.5e-16)	RC: gaggaaga

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

Not a single significant pattern

[positions_7nt]

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=67.98; evalue=1e-68

ccgCCaCCaCCGycg

CGRCGGTGGTGGCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 718 (43.36%)
Max nb of predicted sites per peak: 26
(2:18145600-18147599(.))
Mean nb of predicted sites per peak: 2.94

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=61.13; evalue=7.4e-62

ccgCCGCCGCcg

CGGCGGCGGCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 655 (39.55%)
Max nb of predicted sites per peak: 22
(2:14857000-14857999(.))
Mean nb of predicted sites per peak: 3.16

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=56.44; evalue=3.6e-57

raAACAGAGarr

YYTCTCTGTTTY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 410 (24.76%)
Max nb of predicted sites per peak: 8
(3:9302000-9303599(.))
Mean nb of predicted sites per peak: 1.48

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=51.34; evalue=4.6e-52

mmAAACCCtAaamm

KKTTTAGGGTTTKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 513 (30.98%)
Max nb of predicted sites per peak: 5
(5:506200-507199(.))
Mean nb of predicted sites per peak: 1.31

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=40.33; evalue=4.7e-41

avAGATTCATsw

WSATGAATCTBT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 150 (9.06%)
Max nb of predicted sites per peak: 2
(5:8221400-8221999(.))
Mean nb of predicted sites per peak: 1.09

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=3.28; evalue=0.00052

ataTATAaAya

TRTTTATATAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 610 (36.84%)
Max nb of predicted sites per peak: 20
(5:17978800-17981599(.))
Mean nb of predicted sites per peak: 2.75

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=0.97; evalue=0.11

asAAAATAwa

TWTATTTTST

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 470 (28.38%)
Max nb of predicted sites per peak: 6
(5:5285000-5286799(.))
Mean nb of predicted sites per peak: 1.40

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=0.81; evalue=0.15

amAATAATww

WWATTATTKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 636 (38.41%)
Max nb of predicted sites per peak: 8
(5:7812600-7813999(.))
Mean nb of predicted sites per peak: 1.74

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=0.36; evalue=0.44

gsCGGmGAyg

CRTCKCCGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 788 (47.58%)
Max nb of predicted sites per peak: 11
(2:15335600-15337799(.))
Mean nb of predicted sites per peak: 2.13

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv4_m1

k-mer sig=41.63; evalue=2.3e-42

myctaAACCCtAamy

RKTTAGGGTTTAGRK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 491 (29.65%)
Max nb of predicted sites per peak: 5
(5:21735200-21736799(.))
Mean nb of predicted sites per peak: 1.32

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m2

k-mer sig=30.02; evalue=9.5e-31

mrGAAACAGAGcar

YTGCTCTGTTTCYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 509 (30.74%)
Max nb of predicted sites per peak: 7
(3:9302000-9303599(.))
Mean nb of predicted sites per peak: 1.48

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m3

k-mer sig=26.05; evalue=8.9e-27

aaCAAGAACAav

BTTGTTCTTGTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 401 (24.21%)
Max nb of predicted sites per peak: 6
(5:1239000-1240199(.))
Mean nb of predicted sites per peak: 1.41

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m4

k-mer sig=18.01; evalue=9.8e-19

chTCAAATCCwh

DWGGATTTGADG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 199 (12.02%)
Max nb of predicted sites per peak: 3
(3:21737800-21739399(.))
Mean nb of predicted sites per peak: 1.11

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m5

k-mer sig=15.26; evalue=5.5e-16

yyTCTTCCTCyt

ARGAGGAAGARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 745 (44.99%)
Max nb of predicted sites per peak: 9
(5:26041000-26042599(.))
Mean nb of predicted sites per peak: 2.08

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: H3K9_up (08/04/2025 09:05)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results