peak-motifs H3K14

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=84.56; evalue=2.8e-85

rmaACAGAGAcarm

KYTGTCTCTGTTKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmaACAGAGAcarm

REF6 MA1415.2 D 9 0.6429 0.974 0.626 NA NA

AT3G10030 MA1662.2 D 8 0.5714 0.841 0.481 NA NA

TEM1 MA1800.1 D 8 0.5714 0.727 0.415 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1188 (20.41%)
Max nb of predicted sites per peak: 4
(4:16639800-16641799(.))
Mean nb of predicted sites per peak: 1.22

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=75.56; evalue=2.8e-76

ccgCCGCCGCcg

CGGCGGCGGCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccgCCGCCGCcg

LOB MA2022.2 D 12 0.9231 0.940 0.868 NA NA

ERF073 MA1754.2 D 11 0.9167 0.944 0.866 NA NA

ERF115 MA2013.2 D 11 0.9167 0.929 0.852 NA NA

Total matches= 66 (63 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1650 (28.35%)
Max nb of predicted sites per peak: 14
(5:7524600-7525799(.))
Mean nb of predicted sites per peak: 2.26

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=65.66; evalue=2.2e-66

kyttCAGGTAAwr

YWTTACCTGAARM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kyttCAGGTAAwr

AT5G47660 MA1365.3 D 7 0.5385 0.887 0.478 NA NA

NAC050 MA1663.3 D 8 0.6154 0.732 0.450 NA NA

OsMSL08 MA2405.1 D 6 0.4615 0.949 0.438 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1065 (18.30%)
Max nb of predicted sites per peak: 5
(2:972800-977399(.))
Mean nb of predicted sites per peak: 1.18

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=64.88; evalue=1.3e-65

mgGaGGAGGAagm

KCTTCCTCCTCCK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgGaGGAGGAagm

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1723 (29.60%)
Max nb of predicted sites per peak: 10
(4:11984400-11985399(.))
Mean nb of predicted sites per peak: 1.58

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=64.65; evalue=2.2e-65

mmAAACCCTAAmv

BKTTAGGGTTTKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmAAACCCTAAmv

AT1G72740 MA1353.2 R 11 0.8462 0.975 0.825 NA NA

TRB2 MA1355.2 D 11 0.8462 0.903 0.764 NA NA

TRB1 MA2032.2 D 9 0.6923 0.972 0.673 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1320 (22.68%)
Max nb of predicted sites per peak: 4
(5:26331200-26332799(.))
Mean nb of predicted sites per peak: 1.26

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=10.12; evalue=7.6e-11

ccgCCACCGttkc

GMAACGGTGGCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccgCCACCGttkc

DREB2F MA1242.1 D 11 0.8462 0.800 0.677 NA NA

ERF8 MA0994.3 R 11 0.8462 0.721 0.610 NA NA

ERF014 MA1222.1 D 12 0.7500 0.797 0.598 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1694 (29.10%)
Max nb of predicted sites per peak: 9
(5:17330200-17331599(.))
Mean nb of predicted sites per peak: 1.59

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=7.27; evalue=5.4e-08

craaaCCGCCGCCtcc

GGAGGCGGCGGTTTYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor craaaCCGCCGCCtcc

ERF104 MA1239.2 D 15 0.8824 0.770 0.680 NA NA

ERF091 MA1228.2 R 13 0.8125 0.790 0.642 NA NA

RAP2-12 MA1256.2 R 11 0.6875 0.919 0.632 NA NA

Total matches= 60 (57 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1466 (25.18%)
Max nb of predicted sites per peak: 12
(1:11402800-11403599(.))
Mean nb of predicted sites per peak: 1.67

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=6.70; evalue=2e-07

vgAAACCGGAGGar

YTCCTCCGGTTTCB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vgAAACCGGAGGar

AT1G76870 MA1367.2 D 8 0.5714 0.912 0.521 NA NA

TRP5 MA1802.2 D 7 0.5000 0.813 0.406 NA NA

LBD13 MA2021.2 R 8 0.5714 0.706 0.403 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1190 (20.44%)
Max nb of predicted sites per peak: 6
(1:11799000-11800999(.))
Mean nb of predicted sites per peak: 1.23

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=5.71; evalue=1.9e-06

avaAAACAAAAattGtww

WWACAATTTTTGTTTTBT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor avaAAACAAAAattGtww

ATHB-40 MA1214.2 D 11 0.6111 0.746 0.456 NA NA

MGP MA1158.2 D 12 0.6316 0.721 0.456 NA NA

SGR5 MA1159.2 D 11 0.5500 0.818 0.450 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 952 (16.35%)
Max nb of predicted sites per peak: 4
(4:14616200-14619399(.))
Mean nb of predicted sites per peak: 1.19

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=6.70; evalue=2e-07

msaAACCGGAGAar

YTTCTCCGGTTTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaAACCGGAGAar

AT1G76870 MA1367.2 D 8 0.5714 0.910 0.520 NA NA

LBD18 MA1673.2 D 8 0.5714 0.743 0.424 NA NA

TRP5 MA1802.2 D 7 0.5000 0.807 0.403 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1165 (20.01%)
Max nb of predicted sites per peak: 6
(4:8837400-8838599(.))
Mean nb of predicted sites per peak: 1.23

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=56.21; evalue=6.2e-57

mmCAAACCCtAamc

GKTTAGGGTTTGKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmCAAACCCtAamc

AT1G72740 MA1353.2 R 11 0.7857 0.975 0.766 NA NA

TRB2 MA1355.2 D 11 0.7857 0.896 0.704 NA NA

TRB1 MA2032.2 D 9 0.6429 0.969 0.623 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1104 (18.97%)
Max nb of predicted sites per peak: 4
(2:14726800-14727799(.))
Mean nb of predicted sites per peak: 1.20

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=55.85; evalue=1.4e-56

amCAAGAACmw

WKGTTCTTGKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amCAAGAACmw

HSFA6B MA1664.3 R 8 0.7273 0.715 0.520 NA NA

HSFC1 MA1667.3 D 8 0.7273 0.713 0.518 NA NA

SBP6 MA2420.1 D 8 0.7273 0.705 0.513 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1628 (27.97%)
Max nb of predicted sites per peak: 5
(4:9778000-9779799(.))
Mean nb of predicted sites per peak: 1.28

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=37.21; evalue=6.2e-38

yyTCTTCCTCyt

ARGAGGAAGARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyTCTTCCTCyt

NTL8 MA1678.3 R 7 0.5385 0.836 0.450 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1927 (33.10%)
Max nb of predicted sites per peak: 9
(5:152600-153599(.))
Mean nb of predicted sites per peak: 1.68

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=36.97; evalue=1.1e-37

wkCtCCGGCGrc

GYCGCCGGAGMW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkCtCCGGCGrc

ENAP2 MA2040.2 D 9 0.7500 0.979 0.734 NA NA

ASIL2 MA2039.2 D 9 0.7500 0.976 0.732 NA NA

ERF115 MA2013.2 D 11 0.9167 0.701 0.643 NA NA

Total matches= 27 (24 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1595 (27.40%)
Max nb of predicted sites per peak: 18
(1:11799000-11800999(.))
Mean nb of predicted sites per peak: 2.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=35.71; evalue=1.9e-36

arGAAACAGAGra

TYCTCTGTTTCYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor arGAAACAGAGra

REF6 MA1415.2 D 9 0.6923 0.963 0.666 NA NA

AT3G10030 MA1662.2 D 8 0.6154 0.721 0.444 NA NA

NTL8 MA1678.3 D 7 0.5000 0.863 0.432 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1376 (23.64%)
Max nb of predicted sites per peak: 5
(5:259200-260399(.))
Mean nb of predicted sites per peak: 1.31

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=3.08; evalue=0.00083

rtAATCAAAym

KRTTTGATTAY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtAATCAAAym

TCX3 MA1682.2 D 11 0.9167 0.733 0.672 NA NA

HAT2 MA1198.2 D 8 0.7273 0.750 0.545 NA NA

WRKY59 MA1304.2 D 9 0.7500 0.706 0.529 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1139 (19.57%)
Max nb of predicted sites per peak: 5
(1:27274200-27276199(.))
Mean nb of predicted sites per peak: 1.20

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=2.74; evalue=0.0018

atAATTCAAhw

WDTTGAATTAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atAATTCAAhw

TCX3 MA1682.2 D 10 0.7692 0.873 0.672 NA NA

WRKY45 MA1087.3 D 10 0.9091 0.729 0.663 NA NA

WRKY71 MA1316.2 D 10 0.9091 0.723 0.657 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 753 (12.94%)
Max nb of predicted sites per peak: 4
(5:19386400-19388399(.))
Mean nb of predicted sites per peak: 1.15

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=2.16; evalue=0.0069

rwAAATAAAha

TDTTTATTTWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwAAATAAAha

AHL13 MA2374.1 D 8 0.7273 0.768 0.559 NA NA

Zm00001d027846 MA1823.2 D 8 0.7273 0.756 0.550 NA NA

AHL20 MA0933.1 D 8 0.7273 0.721 0.525 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1233 (21.18%)
Max nb of predicted sites per peak: 9
(5:17949400-17950999(.))
Mean nb of predicted sites per peak: 1.34

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=1.84; evalue=0.014

wtAATTTTCyw

WRGAAAATTAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wtAATTTTCyw

PHL11 MA1163.3 R 10 0.9091 0.734 0.667 NA NA

PHL1 MA1389.2 R 11 0.9167 0.715 0.656 NA NA

PHL4 MA2023.2 D 10 0.9091 0.718 0.653 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 672 (11.54%)
Max nb of predicted sites per peak: 3
(5:6697200-6699199(.))
Mean nb of predicted sites per peak: 1.11

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=1.63; evalue=0.023

wvaTAAAATAwa

TWTATTTTATBW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wvaTAAAATAwa

AHL20 MA0933.1 D 8 0.6667 0.791 0.527 NA NA

RVE4 MA1187.2 R 8 0.6154 0.853 0.525 NA NA

RVE7 MA1401.2 D 8 0.6154 0.843 0.519 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 860 (14.77%)
Max nb of predicted sites per peak: 6
(2:10852600-10853999(.))
Mean nb of predicted sites per peak: 1.25

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_plants_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: H3K14_up (08/04/2025 11:27)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgGaGGAGGAagm

Total matches= 0

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyTCTTCCTCyt

NTL8 MA1678.3 R 7 0.5385 0.836 0.450 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: H3K14_up (08/04/2025 11:27)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mgGaGGAGGAagm Total matches= 0

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yyTCTTCCTCyt NTL8 MA1678.3 R 7 0.5385 0.836 0.450 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgGaGGAGGAagm

Total matches= 0

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyTCTTCCTCyt

NTL8 MA1678.3 R 7 0.5385 0.836 0.450 NA NA

Total matches= 1