peak-motifs GCN5

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=350.00; evalue=0

maAAACCCTAawy

RWTTAGGGTTTTK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor maAAACCCTAawy

AT1G72740 MA1353.2 R 11 0.8462 0.988 0.836 NA NA

TRB2 MA1355.2 D 11 0.8462 0.923 0.781 NA NA

TRB1 MA2032.2 D 9 0.6923 0.979 0.678 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7856 (23.02%)
Max nb of predicted sites per peak: 21
(1:10300016-10300446(.))
Mean nb of predicted sites per peak: 2.05

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=350.00; evalue=0

cgtCGCCGCCGtyg

CRACGGCGGCGACG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cgtCGCCGCCGtyg

RAP2-6 MA1221.1 R 14 0.9333 0.857 0.800 NA NA

ERF5 MA1225.1 D 14 0.9333 0.838 0.782 NA NA

ERF8 MA0994.3 R 11 0.7857 0.960 0.754 NA NA

Total matches= 62 (59 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9586 (28.09%)
Max nb of predicted sites per peak: 56
(4:17043737-17047970(.))
Mean nb of predicted sites per peak: 3.74

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=350.00; evalue=0

vyGaCACGTGtCrb

VYGACACGTGTCRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyGaCACGTGtCrb

HY5 MA0551.2 D 12 0.8571 0.939 0.805 NA NA

DPBF3 MA1338.3 R 11 0.7857 0.939 0.738 NA NA

ZmbZIP96 MA2413.1 R 11 0.7857 0.900 0.707 NA NA

Total matches= 86 (83 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3857 (11.30%)
Max nb of predicted sites per peak: 40
(3:3237761-3239527(.))
Mean nb of predicted sites per peak: 3.61

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=350.00; evalue=0

ckCCGTCGTyk

MRACGACGGMG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ckCCGTCGTyk

ERF8 MA0994.3 R 11 1.0000 0.745 0.745 NA NA

ERF087 MA1247.2 R 10 0.9091 0.736 0.669 NA NA

LEP MA1246.2 D 10 0.9091 0.728 0.662 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8124 (23.81%)
Max nb of predicted sites per peak: 40
(4:17043737-17047970(.))
Mean nb of predicted sites per peak: 2.87

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=350.00; evalue=0

rgAAGAAGAAramr

YKTYTTCTTCTTCY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rgAAGAAGAAramr

PI MA0559.1 D 12 0.7500 0.793 0.595 NA NA

NTL8 MA1678.3 D 8 0.5714 0.868 0.496 NA NA

Zm00001d027846 MA1823.2 D 8 0.5714 0.807 0.461 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9195 (26.95%)
Max nb of predicted sites per peak: 42
(5:16812260-16818895(.))
Mean nb of predicted sites per peak: 2.91

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=300; evalue=1e-300

rrrgagasgraGAGAGAaGaaGar

YTCTTCTTCTCTCTYCSTCTCYYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrrgagasgraGAGAGAaGaaGar

RAMOSA1 MA1416.1 D 14 0.5833 0.788 0.460 NA NA

BPC1 MA1404.1 D 17 0.5484 0.767 0.420 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8746 (25.63%)
Max nb of predicted sites per peak: 36
(5:22827221-22828878(.))
Mean nb of predicted sites per peak: 2.24

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=300; evalue=1e-300

graGAaGaarwCGGAGAaraagrr

YYCTTYTTCTCCGWYTTCTTCTYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graGAaGaarwCGGAGAaraagrr

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7764 (22.75%)
Max nb of predicted sites per peak: 33
(2:9353944-9355148(.))
Mean nb of predicted sites per peak: 2.46

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=300; evalue=1e-300

cmaAAACCCTAamy

RKTTAGGGTTTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmaAAACCCTAamy

AT1G72740 MA1353.2 R 11 0.7857 0.979 0.769 NA NA

TRB2 MA1355.2 D 11 0.7857 0.902 0.709 NA NA

TRB1 MA2032.2 D 9 0.6429 0.983 0.632 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7518 (22.03%)
Max nb of predicted sites per peak: 24
(1:10308217-10308795(.))
Mean nb of predicted sites per peak: 2.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=300; evalue=1e-300

rrGAGaAGAGAGAaatcGarrarr

YYTYYTCGATTTCTCTCTTCTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAGaAGAGAGAaatcGarrarr

RAMOSA1 MA1416.1 D 14 0.5833 0.705 0.411 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6466 (18.95%)
Max nb of predicted sites per peak: 24
(1:27338086-27340592(.))
Mean nb of predicted sites per peak: 1.97

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=49.69; evalue=2e-50

cgCCGGCGacgg

CCGTCGCCGGCG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cgCCGGCGacgg

RAP2-11 MA1266.2 R 11 0.9167 0.866 0.794 NA NA

Zm00001d031796 MA1831.2 D 10 0.8333 0.859 0.716 NA NA

ERF073 MA1754.2 R 11 0.9167 0.759 0.696 NA NA

Total matches= 57 (54 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9600 (28.14%)
Max nb of predicted sites per peak: 56
(4:17043737-17047970(.))
Mean nb of predicted sites per peak: 3.63

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=350.00; evalue=0

cmaAAACCCtAahy

RDTTAGGGTTTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmaAAACCCtAahy

AT1G72740 MA1353.2 R 11 0.7857 0.986 0.775 NA NA

TRB2 MA1355.2 D 11 0.7857 0.918 0.721 NA NA

TRB1 MA2032.2 D 9 0.6429 0.980 0.630 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7595 (22.26%)
Max nb of predicted sites per peak: 28
(1:10300016-10300446(.))
Mean nb of predicted sites per peak: 2.04

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=315.41; evalue=3.9e-316

cyCACGCGCsks

SMSGCGCGTGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCACGCGCsks

FAR1 MA1382.2 D 9 0.7500 0.985 0.739 NA NA

CAMTA1 MA1197.2 R 9 0.7500 0.893 0.670 NA NA

FHY3 MA0557.2 D 8 0.6667 0.974 0.649 NA NA

Total matches= 65 (62 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4353 (12.76%)
Max nb of predicted sites per peak: 25
(3:17135067-17138820(.))
Mean nb of predicted sites per peak: 2.17

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=284.57; evalue=2.7e-285

ykCTTCTTCty

RAGAAGAAGMR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ykCTTCTTCty

NAC005 MA1783.1 D 11 0.5789 0.770 0.446 NA NA

NAC073 MA1790.1 D 9 0.5294 0.801 0.424 NA NA

NAC071 MA1789.1 D 9 0.5294 0.790 0.418 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10922 (32.01%)
Max nb of predicted sites per peak: 40
(4:18484965-18487809(.))
Mean nb of predicted sites per peak: 2.82

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=210.15; evalue=7.1e-211

msACGTGGCarm

KYTGCCACGTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msACGTGGCarm

BZIP16 MA1349.2 D 10 0.8333 0.983 0.819 NA NA

BZIP68 MA0968.3 R 10 0.8333 0.973 0.811 NA NA

bHLH77 MA1362.2 R 12 1.0000 0.811 0.811 NA NA

Total matches= 101 (98 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 5196 (15.23%)
Max nb of predicted sites per peak: 27
(3:535994-538673(.))
Mean nb of predicted sites per peak: 2.17

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=209.26; evalue=5.5e-210

wwtaGGCCCAttwr

YWAATGGGCCTAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwtaGGCCCAttwr

ASR1 MA1812.2 D 9 0.6429 0.912 0.586 NA NA

TCP2 MA1064.2 D 8 0.5714 0.742 0.424 NA NA

TCP23 MA1066.1 R 8 0.5714 0.736 0.421 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4201 (12.31%)
Max nb of predicted sites per peak: 21
(3:19661826-19662574(.))
Mean nb of predicted sites per peak: 2.59

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=300; evalue=1e-300

yycyctCttCtTCTCtCtCyyy

RRRGAGAGAGAAGAAGAGRGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yycyctCttCtTCTCtCtCyyy

BPC6 MA1402.1 D 18 0.7200 0.700 0.504 NA NA

RAMOSA1 MA1416.1 R 13 0.5652 0.748 0.423 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10243 (30.02%)
Max nb of predicted sites per peak: 30
(2:180984-183746(.))
Mean nb of predicted sites per peak: 2.53

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=300; evalue=1e-300

cmaAAACCCTAawyy

RRWTTAGGGTTTTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmaAAACCCTAawyy

AT1G72740 MA1353.2 R 11 0.7333 0.980 0.719 NA NA

TRB2 MA1355.2 D 11 0.7333 0.905 0.664 NA NA

TRB1 MA2032.2 D 9 0.6000 0.982 0.589 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7487 (21.94%)
Max nb of predicted sites per peak: 24
(1:10308217-10308795(.))
Mean nb of predicted sites per peak: 2.04

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=300; evalue=1e-300

rrgrgaGaaGamGAAGAAGAarrr

YYYTTCTTCTTCKTCTTCTCYCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrgrgaGaaGamGAAGAAGAarrr

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10124 (29.67%)
Max nb of predicted sites per peak: 56
(4:18484965-18487809(.))
Mean nb of predicted sites per peak: 4.03

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=300; evalue=1e-300

rrrGAGAGAGArakcgarrr

YYYTCGMTYTCTCTCTCYYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrrGAGAGAGArakcgarrr

BPC6 MA1402.1 R 20 0.9524 0.760 0.723 NA NA

BPC1 MA1404.1 D 20 0.8333 0.750 0.625 NA NA

RAMOSA1 MA1416.1 D 14 0.7000 0.830 0.581 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8264 (24.22%)
Max nb of predicted sites per peak: 30
(5:26565405-26567569(.))
Mean nb of predicted sites per peak: 2.70

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=300; evalue=1e-300

rrardsgraGAaGaAGAGaGagrr

YYCTCTCTCTTCTTCTYCSHYTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrardsgraGAaGaAGAGaGagrr

BPC6 MA1402.1 R 17 0.6071 0.709 0.431 NA NA

RAMOSA1 MA1416.1 D 14 0.5833 0.714 0.416 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10249 (30.04%)
Max nb of predicted sites per peak: 32
(5:2854735-2857055(.))
Mean nb of predicted sites per peak: 2.56

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_plants_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: GCN5 (08/04/2025 12:32)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrrgagasgraGAGAGAaGaaGar

RAMOSA1 MA1416.1 D 14 0.5833 0.788 0.460 NA NA

BPC1 MA1404.1 D 17 0.5484 0.767 0.420 NA NA

Total matches= 2

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graGAaGaarwCGGAGAaraagrr

Total matches= 0

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAGaAGAGAGAaatcGarrarr

RAMOSA1 MA1416.1 D 14 0.5833 0.705 0.411 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yycyctCttCtTCTCtCtCyyy

BPC6 MA1402.1 D 18 0.7200 0.700 0.504 NA NA

RAMOSA1 MA1416.1 R 13 0.5652 0.748 0.423 NA NA

Total matches= 2

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrgrgaGaaGamGAAGAAGAarrr

Total matches= 0

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrardsgraGAaGaAGAGaGagrr

BPC6 MA1402.1 R 17 0.6071 0.709 0.431 NA NA

RAMOSA1 MA1416.1 D 14 0.5833 0.714 0.416 NA NA

Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: GCN5 (08/04/2025 12:32)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrrgagasgraGAGAGAaGaaGar RAMOSA1 MA1416.1 D 14 0.5833 0.788 0.460 NA NA BPC1 MA1404.1 D 17 0.5484 0.767 0.420 NA NA Total matches= 2

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor graGAaGaarwCGGAGAaraagrr Total matches= 0

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrGAGaAGAGAGAaatcGarrarr RAMOSA1 MA1416.1 D 14 0.5833 0.705 0.411 NA NA Total matches= 1

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yycyctCttCtTCTCtCtCyyy BPC6 MA1402.1 D 18 0.7200 0.700 0.504 NA NA RAMOSA1 MA1416.1 R 13 0.5652 0.748 0.423 NA NA Total matches= 2

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrgrgaGaaGamGAAGAAGAarrr Total matches= 0

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrardsgraGAaGaAGAGaGagrr BPC6 MA1402.1 R 17 0.6071 0.709 0.431 NA NA RAMOSA1 MA1416.1 D 14 0.5833 0.714 0.416 NA NA Total matches= 2

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrrgagasgraGAGAGAaGaaGar

RAMOSA1 MA1416.1 D 14 0.5833 0.788 0.460 NA NA

BPC1 MA1404.1 D 17 0.5484 0.767 0.420 NA NA

Total matches= 2

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graGAaGaarwCGGAGAaraagrr

Total matches= 0

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGAGaAGAGAGAaatcGarrarr

RAMOSA1 MA1416.1 D 14 0.5833 0.705 0.411 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yycyctCttCtTCTCtCtCyyy

BPC6 MA1402.1 D 18 0.7200 0.700 0.504 NA NA

RAMOSA1 MA1416.1 R 13 0.5652 0.748 0.423 NA NA

Total matches= 2

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrgrgaGaaGamGAAGAAGAarrr

Total matches= 0

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrardsgraGAaGaAGAGaGagrr

BPC6 MA1402.1 R 17 0.6071 0.709 0.431 NA NA

RAMOSA1 MA1416.1 D 14 0.5833 0.714 0.416 NA NA

Total matches= 2