position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title AntpF1-few -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 792 Sum of sequence lengths 273197 Min sequence length 0 Max sequence length 1000 Average sequence length 344 Possible positions 273197 Oligonucleotide statistics: Total occurrences 242667 Position interval parameters: Position interval 20 Number of windows 50 Total positions 273197 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 17 340 2 -24 [-479,-460] -469.5 20 392 3 -23 [-459,-440] -449.5 21 416 4 -22 [-439,-420] -429.5 25 469 5 -21 [-419,-400] -409.5 29 527 6 -20 [-399,-380] -389.5 32 606 7 -19 [-379,-360] -369.5 35 671 8 -18 [-359,-340] -349.5 37 715 9 -17 [-339,-320] -329.5 45 818 10 -16 [-319,-300] -309.5 51 957 11 -15 [-299,-280] -289.5 60 1109 12 -14 [-279,-260] -269.5 76 1353 13 -13 [-259,-240] -249.5 98 1751 14 -12 [-239,-220] -229.5 130 2304 15 -11 [-219,-200] -209.5 171 3056 16 -10 [-199,-180] -189.5 236 4065 17 -9 [-179,-160] -169.5 327 5634 18 -8 [-159,-140] -149.5 450 7963 19 -7 [-139,-120] -129.5 619 10697 20 -6 [-119,-100] -109.5 781 13933 21 -5 [-99,-80] -89.5 792 15840 22 -4 [-79,-60] -69.5 792 15840 23 -3 [-59,-40] -49.5 792 15840 24 -2 [-39,-20] -29.5 792 15840 25 -1 [-19,0] -9.5 792 15840 26 0 [1,20] 10.5 792 15840 27 1 [21,40] 30.5 792 15840 28 2 [41,60] 50.5 792 15840 29 3 [61,80] 70.5 792 15840 30 4 [81,100] 90.5 792 15840 31 5 [101,120] 110.5 765 13763 32 6 [121,140] 130.5 615 10539 33 7 [141,160] 150.5 446 7841 34 8 [161,180] 170.5 322 5545 35 9 [181,200] 190.5 231 4003 36 10 [201,220] 210.5 170 3007 37 11 [221,240] 230.5 129 2274 38 12 [241,260] 250.5 96 1733 39 13 [261,280] 270.5 75 1339 40 14 [281,300] 290.5 58 1099 41 15 [301,320] 310.5 51 950 42 16 [321,340] 330.5 45 807 43 17 [341,360] 350.5 37 713 44 18 [361,380] 370.5 34 670 45 19 [381,400] 390.5 32 604 46 20 [401,420] 410.5 29 525 47 21 [421,440] 430.5 25 467 48 22 [441,460] 450.5 21 414 49 23 [461,480] 470.5 20 388 50 24 [481,500] 490.5 17 340 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 62414 | 838.0 | 49 | 0.0e+00 | 0 | 300 | 1 | 59 | 50 | 52 | 61 | 68 | 84 | 89 | 83 | 110 | 148 | 185 | 239 | 327 | 404 | 562 | 819 | 1219 | 1768 | 2464 | 3257 | 3830 | 3986 | 4004 | 3964 | 3998 | 3887 | 3802 | 3695 | 3726 | 3713 | 3144 | 2306 | 1659 | 1166 | 809 | 599 | 437 | 336 | 259 | 208 | 171 | 124 | 102 | 85 | 89 | 79 | 66 | 32 | 41 | 49 |
| g | g | 62247 | 772.9 | 49 | 0.0e+00 | 0 | 300 | 2 | 49 | 54 | 65 | 66 | 76 | 66 | 81 | 97 | 117 | 141 | 153 | 219 | 295 | 429 | 559 | 856 | 1199 | 1751 | 2423 | 3193 | 3702 | 3743 | 3840 | 3818 | 3997 | 3953 | 3889 | 3854 | 3691 | 3795 | 3135 | 2385 | 1800 | 1233 | 853 | 631 | 450 | 296 | 217 | 196 | 168 | 139 | 110 | 87 | 82 | 82 | 54 | 61 | 50 | 47 |
| a | a | 58570 | 396.7 | 49 | 6.4e-56 | 2.6e-55 | 54.59 | 3 | 57 | 66 | 85 | 63 | 84 | 74 | 92 | 112 | 134 | 145 | 199 | 238 | 341 | 471 | 664 | 780 | 1179 | 1833 | 2488 | 3250 | 3569 | 3421 | 3426 | 3239 | 3252 | 3249 | 3244 | 3444 | 3607 | 3587 | 3301 | 2349 | 1672 | 1191 | 832 | 600 | 452 | 357 | 281 | 199 | 170 | 131 | 89 | 107 | 95 | 87 | 64 | 74 | 62 | 64 |
| t | t | 59436 | 310.7 | 49 | 1.0e-39 | 4.1e-39 | 38.39 | 4 | 57 | 64 | 61 | 81 | 84 | 112 | 98 | 108 | 154 | 194 | 203 | 243 | 300 | 441 | 606 | 825 | 1210 | 1785 | 2447 | 3234 | 3711 | 3664 | 3440 | 3452 | 3148 | 3242 | 3396 | 3514 | 3558 | 3527 | 3095 | 2477 | 1808 | 1250 | 866 | 645 | 494 | 338 | 242 | 213 | 186 | 165 | 138 | 103 | 103 | 79 | 85 | 67 | 67 | 56 |
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