/var/www/html/rsat/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title AntpF1-few -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	792
	Sum of sequence lengths      	273197
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	344
	Possible positions           	272405
 Oligonucleotide statistics:
	Total occurrences    	241798
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	272405
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	17	340
	2	-24	[-479,-460]	-469.5	20	392
	3	-23	[-459,-440]	-449.5	21	416
	4	-22	[-439,-420]	-429.5	25	469
	5	-21	[-419,-400]	-409.5	29	527
	6	-20	[-399,-380]	-389.5	32	606
	7	-19	[-379,-360]	-369.5	35	671
	8	-18	[-359,-340]	-349.5	37	715
	9	-17	[-339,-320]	-329.5	45	818
	10	-16	[-319,-300]	-309.5	51	957
	11	-15	[-299,-280]	-289.5	60	1109
	12	-14	[-279,-260]	-269.5	76	1353
	13	-13	[-259,-240]	-249.5	98	1751
	14	-12	[-239,-220]	-229.5	130	2304
	15	-11	[-219,-200]	-209.5	171	3056
	16	-10	[-199,-180]	-189.5	236	4065
	17	-9	[-179,-160]	-169.5	327	5634
	18	-8	[-159,-140]	-149.5	450	7963
	19	-7	[-139,-120]	-129.5	619	10697
	20	-6	[-119,-100]	-109.5	781	13933
	21	-5	[-99,-80]	-89.5	792	15840
	22	-4	[-79,-60]	-69.5	792	15840
	23	-3	[-59,-40]	-49.5	792	15840
	24	-2	[-39,-20]	-29.5	792	15840
	25	-1	[-19,0]	-9.5	792	15840
	26	0	[1,20]	10.5	792	15840
	27	1	[21,40]	30.5	792	15840
	28	2	[41,60]	50.5	792	15840
	29	3	[61,80]	70.5	792	15840
	30	4	[81,100]	90.5	792	15813
	31	5	[101,120]	110.5	760	13613
	32	6	[121,140]	130.5	610	10370
	33	7	[141,160]	150.5	446	7717
	34	8	[161,180]	170.5	318	5454
	35	9	[181,200]	190.5	231	3942
	36	10	[201,220]	210.5	170	2966
	37	11	[221,240]	230.5	128	2241
	38	12	[241,260]	250.5	95	1712
	39	13	[261,280]	270.5	74	1322
	40	14	[281,300]	290.5	58	1092
	41	15	[301,320]	310.5	51	944
	42	16	[321,340]	330.5	43	799
	43	17	[341,360]	350.5	36	710
	44	18	[361,380]	370.5	34	668
	45	19	[381,400]	390.5	32	601
	46	20	[401,420]	410.5	28	521
	47	21	[421,440]	430.5	24	463
	48	22	[441,460]	450.5	21	413
	49	23	[461,480]	470.5	20	385
	50	24	[481,500]	490.5	17	323

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gc gc 20311 485.7 49 0.0e+00 0 300 1 17 14 14 16 25 21 21 24 24 46 58 71 99 134 155 273 374 567 788 1025 1239 1301 1343 1311 1392 1425 1309 1220 1205 1181 940 707 561 356 253 194 142 86 70 74 51 35 26 25 28 26 15 10 6 14
cg cg 16503 440.8 49 0.0e+00 0 300 2 11 12 12 14 15 23 25 18 23 29 49 64 68 117 129 232 331 448 622 862 970 1013 1067 1105 1127 1139 1102 1061 994 1000 755 555 409 300 207 139 108 79 47 51 45 21 25 13 15 13 15 6 11 7
cc cc 14295 293.5 49 1.4e-36 2.3e-35 34.64 3 12 10 11 13 17 18 21 20 27 33 38 48 75 75 132 164 267 374 544 752 876 938 978 935 993 859 889 811 872 868 699 493 363 267 179 140 99 94 62 44 43 22 30 21 12 19 14 3 8 13
gg gg 14132 223.9 49 3.4e-24 5.5e-23 22.26 4 7 13 17 20 20 5 23 22 27 32 31 42 71 85 126 190 262 402 534 701 758 829 822 868 944 921 926 895 841 879 742 557 430 280 190 133 108 69 48 43 41 41 26 17 18 19 14 18 15 10
ca ca 17137 213.2 49 2.3e-22 3.6e-21 20.44 5 21 12 20 18 14 23 20 21 26 40 50 67 104 113 174 229 332 536 742 892 1063 1094 1063 1049 1041 1029 966 1016 1005 1026 931 662 464 319 211 149 109 88 92 54 45 38 23 32 35 26 13 13 14 13
aa aa 17629 211.5 49 4.4e-22 7.1e-21 20.15 6 15 25 38 20 34 18 32 44 50 47 67 75 116 159 222 226 334 605 779 989 1045 976 1025 888 916 925 937 1044 1136 1078 1061 696 512 372 239 183 145 112 84 69 53 43 26 33 29 24 16 24 18 25
tg tg 17086 169.3 49 3.8e-15 6e-14 13.22 7 11 20 18 26 26 25 18 27 42 49 33 67 73 114 165 239 314 477 691 899 1080 1043 1083 1033 1063 1001 987 1021 1004 1020 853 670 504 345 258 187 136 81 69 49 49 44 38 26 28 25 19 12 13 11
ag ag 14325 162.7 49 4.1e-14 6.6e-13 12.18 8 15 12 15 8 14 14 19 24 25 29 39 51 78 116 140 198 298 431 574 749 880 859 849 815 876 907 850 875 853 881 752 566 419 276 195 152 93 61 54 46 42 21 21 32 23 20 9 20 12 17
ac ac 13319 159.7 49 1.2e-13 1.9e-12 11.72 9 15 16 16 17 12 16 17 15 22 32 36 58 76 98 153 174 275 385 554 741 808 813 831 825 834 764 758 772 791 800 746 526 332 219 181 119 89 86 66 43 32 33 19 23 20 19 15 9 13 5
gt gt 13798 157.6 49 2.5e-13 4e-12 11.40 10 11 13 19 13 13 24 15 24 34 38 32 50 57 95 128 207 276 382 555 744 832 852 847 823 825 797 856 880 787 843 677 574 401 288 177 151 96 68 41 40 37 37 33 28 19 14 10 13 15 7
tt tt 18064 152.5 49 1.5e-12 2.4e-11 10.62 11 19 21 19 33 28 40 34 35 52 71 67 73 90 157 199 241 370 568 764 960 1154 1074 977 1037 861 913 1025 1078 1095 1055 963 782 581 402 266 191 154 103 68 78 64 60 53 36 35 22 25 24 24 23
at at 13074 144.6 49 2.3e-11 3.6e-10 9.44 12 11 13 16 18 24 26 24 29 37 37 56 54 71 97 149 181 272 412 581 770 835 772 718 706 623 652 696 750 825 817 706 518 382 298 202 135 118 92 73 41 41 32 22 18 23 23 24 21 19 14
ga ga 13810 143.9 49 2.9e-11 4.6e-10 9.34 13 14 14 15 17 18 16 20 27 31 25 32 56 68 115 148 185 287 398 546 722 871 761 827 813 835 809 797 858 857 889 744 504 376 294 217 145 99 68 53 38 37 24 22 17 17 22 14 19 14 15
tc tc 14267 143.1 49 3.8e-11 6e-10 9.22 14 17 10 11 15 17 27 26 24 32 40 55 63 75 89 132 200 303 436 567 767 897 945 863 896 756 836 833 878 839 879 701 554 387 291 185 135 102 66 52 51 41 30 27 20 22 17 22 10 14 12
ta ta 9771 138.3 49 1.9e-10 3e-09 8.52 15 10 13 13 7 13 20 20 22 28 33 47 39 62 81 110 143 222 303 424 606 579 598 514 480 467 486 550 537 620 565 537 427 304 186 136 123 91 82 51 34 30 27 18 21 17 13 18 21 15 8
ct ct 14277 128.5 49 4.8e-09 7.6e-08 7.12 16 15 16 8 16 22 20 23 24 34 46 48 60 79 99 127 194 288 410 554 750 920 939 893 875 837 858 844 807 854 812 716 559 394 257 203 162 111 73 54 57 37 41 24 19 27 21 23 10 7 10 
 Host name	rsat
 Job started	2025-04-13.004326
 Job done	2025-04-13.004327
 Seconds	1.55
	user	1.55
	system	0.02
	cuser	0.01
;	csystem	0