/var/www/html/rsat/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	15 matrices	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	15	1100
		file1	2	11	1147
		file1	3	14	786
		file1	4	11	1890
		file1	5	12	395
		file1	6	13	308
		file1	7	12	893
		file1	8	12	420
		file1	9	13	299
		file1	10	12	1157
		file1	11	24	941
		...	5 more matrices
	file2	15 matrices	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		15		1100
		file2		2		11		1147
		file2		3		14		786
		file2		4		11		1890
		file2		5		12		395
		file2		6		13		308
		file2		7		12		893
		file2		8		12		420
		file2		9		13		299
		file2		10		12		1157
		file2		11		24		941
		...	5 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m1 dyads_m5 dyads_m1 0.998 0.998 24 24 24 24 1.0000 1.0000 1.0000 R 0
dyads_m1 dyads_m5 dyads_m1 dyads_m5 0.998 0.998 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m3 0.976 0.911 15 14 14 15 0.9333 0.9333 1.0000 R 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m1 0.976 0.911 14 15 14 15 0.9333 1.0000 0.9333 R -1
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m4 0.958 0.878 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m5 0.958 0.878 11 12 11 12 0.9167 1.0000 0.9167 D -1
dyads_m5 dyads_m4 dyads_m5 dyads_m4 0.988 0.865 24 21 21 24 0.8750 0.8750 1.0000 D 1
dyads_m4 dyads_m5 dyads_m4 dyads_m5 0.988 0.865 21 24 21 24 0.8750 1.0000 0.8750 D -1
dyads_m1 dyads_m4 dyads_m1 dyads_m4 0.988 0.864 24 21 21 24 0.8750 0.8750 1.0000 R 2
dyads_m4 dyads_m1 dyads_m4 dyads_m1 0.988 0.864 21 24 21 24 0.8750 1.0000 0.8750 R -1
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m5 0.789 0.789 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m5 0.789 0.789 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 0.976 0.781 15 12 12 15 0.8000 0.8000 1.0000 D 3
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m1 0.976 0.781 12 15 12 15 0.8000 1.0000 0.8000 D -3
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 0.896 0.768 14 12 12 14 0.8571 0.8571 1.0000 R 1
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m3 0.896 0.768 12 14 12 14 0.8571 1.0000 0.8571 R -1
oligos_7nt_mkv4_m5 dyads_m2 oligos_7nt_mkv4_m5 dyads_m2 0.966 0.725 12 16 12 16 0.7500 1.0000 0.7500 D -3
dyads_m2 oligos_7nt_mkv4_m5 dyads_m2 oligos_7nt_mkv4_m5 0.966 0.725 16 12 12 16 0.7500 0.7500 1.0000 D 3
dyads_m4 oligos_6nt_mkv3_m1 dyads_m4 oligos_6nt_mkv3_m1 0.974 0.696 21 15 15 21 0.7143 0.7143 1.0000 D 0
oligos_6nt_mkv3_m1 dyads_m4 oligos_6nt_mkv3_m1 dyads_m4 0.974 0.696 15 21 15 21 0.7143 1.0000 0.7143 D 0
oligos_6nt_mkv3_m4 dyads_m2 oligos_6nt_mkv3_m4 dyads_m2 0.973 0.669 11 16 11 16 0.6875 1.0000 0.6875 D -4
dyads_m2 oligos_6nt_mkv3_m4 dyads_m2 oligos_6nt_mkv3_m4 0.973 0.669 16 11 11 16 0.6875 0.6875 1.0000 D 4
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m5 0.723 0.663 11 12 11 12 0.9167 1.0000 0.9167 D -1
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m4 0.723 0.663 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_6nt_mkv3_m3 dyads_m4 oligos_6nt_mkv3_m3 dyads_m4 0.956 0.637 14 21 14 21 0.6667 1.0000 0.6667 R -1
dyads_m4 oligos_6nt_mkv3_m3 dyads_m4 oligos_6nt_mkv3_m3 0.956 0.637 21 14 14 21 0.6667 0.6667 1.0000 R 6
oligos_6nt_mkv3_m1 dyads_m5 oligos_6nt_mkv3_m1 dyads_m5 0.985 0.615 15 24 15 24 0.6250 1.0000 0.6250 D -1
dyads_m5 oligos_6nt_mkv3_m1 dyads_m5 oligos_6nt_mkv3_m1 0.985 0.615 24 15 15 24 0.6250 0.6250 1.0000 D 1
dyads_m1 oligos_6nt_mkv3_m1 dyads_m1 oligos_6nt_mkv3_m1 0.978 0.611 24 15 15 24 0.6250 0.6250 1.0000 R 8
oligos_6nt_mkv3_m1 dyads_m1 oligos_6nt_mkv3_m1 dyads_m1 0.978 0.611 15 24 15 24 0.6250 1.0000 0.6250 R -1
dyads_m1 oligos_6nt_mkv3_m3 dyads_m1 oligos_6nt_mkv3_m3 0.974 0.568 24 14 14 24 0.5833 0.5833 1.0000 D 3
oligos_6nt_mkv3_m3 dyads_m1 oligos_6nt_mkv3_m3 dyads_m1 0.974 0.568 14 24 14 24 0.5833 1.0000 0.5833 D -3
oligos_6nt_mkv3_m3 dyads_m5 oligos_6nt_mkv3_m3 dyads_m5 0.966 0.564 14 24 14 24 0.5833 1.0000 0.5833 R -3
dyads_m5 oligos_6nt_mkv3_m3 dyads_m5 oligos_6nt_mkv3_m3 0.966 0.564 24 14 14 24 0.5833 0.5833 1.0000 R 7
dyads_m4 oligos_7nt_mkv4_m2 dyads_m4 oligos_7nt_mkv4_m2 0.955 0.546 21 12 12 21 0.5714 0.5714 1.0000 D 3
oligos_7nt_mkv4_m2 dyads_m4 oligos_7nt_mkv4_m2 dyads_m4 0.955 0.546 12 21 12 21 0.5714 1.0000 0.5714 D -3
dyads_m2 oligos_6nt_mkv3_m5 dyads_m2 oligos_6nt_mkv3_m5 0.701 0.526 16 12 12 16 0.7500 0.7500 1.0000 D 3
oligos_6nt_mkv3_m5 dyads_m2 oligos_6nt_mkv3_m5 dyads_m2 0.701 0.526 12 16 12 16 0.7500 1.0000 0.7500 D -3
dyads_m5 oligos_7nt_mkv4_m2 dyads_m5 oligos_7nt_mkv4_m2 0.966 0.483 24 12 12 24 0.5000 0.5000 1.0000 D 4
oligos_7nt_mkv4_m2 dyads_m5 oligos_7nt_mkv4_m2 dyads_m5 0.966 0.483 12 24 12 24 0.5000 1.0000 0.5000 D -4
dyads_m1 oligos_7nt_mkv4_m2 dyads_m1 oligos_7nt_mkv4_m2 0.953 0.477 24 12 12 24 0.5000 0.5000 1.0000 R 2
oligos_7nt_mkv4_m2 dyads_m1 oligos_7nt_mkv4_m2 dyads_m1 0.953 0.477 12 24 12 24 0.5000 1.0000 0.5000 R -10 
 Host name	rsat
 Job started	2025-04-13.004415
 Job done	2025-04-13.004429
 Seconds	0.91
	user	0.91
	system	0.45
	cuser	10.5
;	csystem	1.5