RSAT - peak-motifs result

Analysis: AntpF1-few (13/04/2025 00:44)

peak-motifs  -v 1 -title AntpF1-few -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: agagagcgaga (sig=12.61; e-value=2.5e-13) RC: tctcgctctct oligos_6nt_mkv3_m2 assembly: aaacaaa (sig=9.47; e-value=3.4e-10) RC: tttgttt oligos_6nt_mkv3_m3 assembly: cccgctctct (sig=9.46; e-value=3.5e-10) RC: agagagcggg oligos_6nt_mkv3_m4 assembly: acacaca (sig=8.88; e-value=1.3e-09) RC: tgtgtgt oligos_6nt_mkv3_m5 assembly: cactcacc (sig=8.31; e-value=4.9e-09) RC: ggtgagtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: gcacagtgg (sig=10.57; e-value=2.7e-11) RC: ccactgtgc oligos_7nt_mkv4_m2 assembly: gagcgaga (sig=5.22; e-value=6e-06) RC: tctcgctc oligos_7nt_mkv4_m3 assembly: cgcagtcg (sig=4.81; e-value=1.5e-05) RC: cgactgcg oligos_7nt_mkv4_m4 assembly: gcctctgcc (sig=4.63; e-value=2.3e-05) RC: ggcagaggc oligos_7nt_mkv4_m5 assembly: cacgcaca (sig=1.95; e-value=0.011) RC: tgtgcgtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]
dyads	dyads_m1 assembly: tctcccgctctctctctctc (sig=68.72; e-value=1.9e-69) RC: gagagagagagagcgggaga dyads_m2 assembly: acacacacacac (sig=67.24; e-value=5.8e-68) RC: gtgtgtgtgtgt dyads_m3 assembly: ggcagcagcggcagcg (sig=48.75; e-value=1.8e-49) RC: cgctgccgctgctgcc dyads_m4 assembly: ggagagggagagagcgg (sig=68.72; e-value=1.9e-69) RC: ccgctctctccctctcc dyads_m5 assembly: gagagagcgagagcgggaga (sig=68.72; e-value=1.9e-69) RC: tctcccgctctcgctctctc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=12.61; evalue=2.5e-13 aGAGAGAGmGAGAGa TCTCTCKCTCTCTCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 153 (19.32%) Max nb of predicted sites per peak: 53  (Antp-Flag_S1_peak_416::chr3R:3344702-3345076(.)) Mean nb of predicted sites per peak: 7.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=9.47; evalue=3.4e-10 awAAACAAAha TDTTTGTTTWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 174 (21.97%) Max nb of predicted sites per peak: 8  (Antp-Flag_S1_peak_608::chrUn_DS484191v1:745-2044(.)) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=9.46; evalue=3.5e-10 ctCyCkCTCTCTCt AGAGAGAGMGRGAG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 155 (19.57%) Max nb of predicted sites per peak: 52  (Antp-Flag_S1_peak_416::chr3R:3344702-3345076(.)) Mean nb of predicted sites per peak: 6.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=8.88; evalue=1.3e-09 acACACACAca TGTGTGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 159 (20.08%) Max nb of predicted sites per peak: 58  (Antp-Flag_S1_peak_403::chr3L:21498425-21498798(.)) Mean nb of predicted sites per peak: 6.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=8.31; evalue=4.9e-09 cmCACTCACcmm KKGGTGAGTGKG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 146 (18.43%) Max nb of predicted sites per peak: 56  (Antp-Flag_S1_peak_403::chr3L:21498425-21498798(.)) Mean nb of predicted sites per peak: 4.01	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=10.57; evalue=2.7e-11 gsgcACAGTGGgs SCCCACTGTGCSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 113 (14.27%) Max nb of predicted sites per peak: 3  (Antp-Flag_S1_peak_695::chrX:15323267-15323739(.)) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=5.22; evalue=6e-06 gaGAGmGAGAga TCTCTCKCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 169 (21.34%) Max nb of predicted sites per peak: 51  (Antp-Flag_S1_peak_416::chr3R:3344702-3345076(.)) Mean nb of predicted sites per peak: 5.34	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=4.81; evalue=1.5e-05 gbCGCAGTCGcc GGCGACTGCGVC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 76 (9.60%) Max nb of predicted sites per peak: 4  (Antp-Flag_S1_peak_418::chr3R:4450715-4451111(.)) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=4.63; evalue=2.3e-05 cygCCTCTGCCkc GMGGCAGAGGCRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 118 (14.90%) Max nb of predicted sites per peak: 7  (Antp-Flag_S1_peak_14::chr2L:2161554-2161833(.)) Mean nb of predicted sites per peak: 1.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=1.95; evalue=0.011 caCACrCACAca TGTGTGYGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 177 (22.35%) Max nb of predicted sites per peak: 57  (Antp-Flag_S1_peak_403::chr3L:21498425-21498798(.)) Mean nb of predicted sites per peak: 5.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_m1	k-mer sig=68.72; evalue=1.9e-69 tCTCTCTCTCTCTCTCTCTCTCTC GAGAGAGAGAGAGAGAGAGAGAGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 119 (15.03%) Max nb of predicted sites per peak: 57  (Antp-Flag_S1_peak_416::chr3R:3344702-3345076(.)) Mean nb of predicted sites per peak: 10.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m2	k-mer sig=67.24; evalue=5.8e-68 acACACACACACACac GTGTGTGTGTGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 159 (20.08%) Max nb of predicted sites per peak: 58  (Antp-Flag_S1_peak_403::chr3L:21498425-21498798(.)) Mean nb of predicted sites per peak: 7.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m3	k-mer sig=48.75; evalue=1.8e-49 gcrGCAGCAGCrGCAGCrrc GYYGCTGCYGCTGCTGCYGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 171 (21.59%) Max nb of predicted sites per peak: 23  (Antp-Flag_S1_peak_210::chr2R:14031517-14031844(.)) Mean nb of predicted sites per peak: 3.82	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m4	k-mer sig=68.72; evalue=1.9e-69 AGAGAGAGAGAGAGAGAGaGa TCTCTCTCTCTCTCTCTCTCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 114 (14.39%) Max nb of predicted sites per peak: 53  (Antp-Flag_S1_peak_416::chr3R:3344702-3345076(.)) Mean nb of predicted sites per peak: 9.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m5	k-mer sig=68.72; evalue=1.9e-69 GAGAGAGAGAGAGAGAGAGAGAGa TCTCTCTCTCTCTCTCTCTCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 120 (15.15%) Max nb of predicted sites per peak: 56  (Antp-Flag_S1_peak_416::chr3R:3344702-3345076(.)) Mean nb of predicted sites per peak: 9.93	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title AntpF1-few -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004321_2025-04-13.004321_RHGHTx/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab