RSAT - peak-motifs result

Analysis: AntpF2-few (13/04/2025 00:45)

peak-motifs  -v 1 -title AntpF2-few -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gagagagcgaga (sig=13.17; e-value=6.8e-14) RC: tctcgctctctc oligos_6nt_mkv3_m2 assembly: cgcacgcacacac (sig=12.44; e-value=3.6e-13) RC: gtgtgtgcgtgcg oligos_6nt_mkv3_m3 assembly: acatacata (sig=11.56; e-value=2.8e-12) RC: tatgtatgt oligos_6nt_mkv3_m4 assembly: cactcacc (sig=10.59; e-value=2.6e-11) RC: ggtgagtg oligos_6nt_mkv3_m5 assembly: acagacag (sig=7.65; e-value=2.2e-08) RC: ctgtctgt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ccagggctg (sig=3.91; e-value=0.00012) RC: cagccctgg oligos_7nt_mkv4_m2 assembly: cacgcaca (sig=3.63; e-value=0.00023) RC: tgtgcgtg oligos_7nt_mkv4_m3 assembly: aaccgaa (sig=3.37; e-value=0.00043) RC: ttcggtt oligos_7nt_mkv4_m4 assembly: acaacaac (sig=3.19; e-value=0.00065) RC: gttgttgt oligos_7nt_mkv4_m5 assembly: ctctttc (sig=3.14; e-value=0.00072) RC: gaaagag	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]
dyads	dyads_m1 assembly: gcacacacacacact (sig=78.18; e-value=6.6e-79) RC: agtgtgtgtgtgtgc dyads_m2 assembly: tctcgctctctctctctc (sig=62.49; e-value=3.2e-63) RC: gagagagagagagcgaga dyads_m3 assembly: ggaaaaataat (sig=44.65; e-value=2.2e-45) RC: attatttttcc dyads_m4 assembly: ataaataa (sig=41.47; e-value=3.4e-42) RC: ttatttat dyads_m5 assembly: ggcagcagcg (sig=40.28; e-value=5.2e-41) RC: cgctgctgcc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=13.17; evalue=6.8e-14 gaGAGAGAGmGAGaga TCTCTCKCTCTCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 175 (25.33%) Max nb of predicted sites per peak: 53  (Antp-Flag_S2_peak_399::chr3R:3344720-3345055(.)) Mean nb of predicted sites per peak: 5.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=12.44; evalue=3.6e-13 caCrCACrCACACACac GTGTGTGTGYGTGYGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 160 (23.15%) Max nb of predicted sites per peak: 58  (Antp-Flag_S2_peak_392::chr3L:21498459-21498763(.)) Mean nb of predicted sites per peak: 6.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=11.56; evalue=2.8e-12 ayAcATACATAya TRTATGTATGTRT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 129 (18.67%) Max nb of predicted sites per peak: 13  (Antp-Flag_S2_peak_471::chr3R:16250159-16250615(.)) Mean nb of predicted sites per peak: 2.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=10.59; evalue=2.6e-11 chCACTCACmcm KGKGTGAGTGDG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 163 (23.59%) Max nb of predicted sites per peak: 57  (Antp-Flag_S2_peak_392::chr3L:21498459-21498763(.)) Mean nb of predicted sites per peak: 3.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=7.65; evalue=2.2e-08 acACAsACAsac GTSTGTSTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 146 (21.13%) Max nb of predicted sites per peak: 56  (Antp-Flag_S2_peak_392::chr3L:21498459-21498763(.)) Mean nb of predicted sites per peak: 3.54	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=3.91; evalue=0.00012 rdcCAGGGCTGym KRCAGCCCTGGHY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 109 (15.77%) Max nb of predicted sites per peak: 4  (Antp-Flag_S2_peak_522::chr3R:26866571-26867041(.)) Mean nb of predicted sites per peak: 1.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=3.63; evalue=0.00023 caCACrCACAca TGTGTGYGTGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 175 (25.33%) Max nb of predicted sites per peak: 57  (Antp-Flag_S2_peak_392::chr3L:21498459-21498763(.)) Mean nb of predicted sites per peak: 3.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=3.37; evalue=0.00043 srAACCGAAhy RDTTCGGTTYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 78 (11.29%) Max nb of predicted sites per peak: 4  (Antp-Flag_S2_peak_260::chr2R:21702909-21703616(.)) Mean nb of predicted sites per peak: 1.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=3.19; evalue=0.00065 maACAACAAcaa TTGTTGTTGTTK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 140 (20.26%) Max nb of predicted sites per peak: 6  (Antp-Flag_S2_peak_342::chr3L:10739177-10739453(.)) Mean nb of predicted sites per peak: 1.56	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=3.14; evalue=0.00072 ctCTCTyTCtc GAGARAGAGAG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 159 (23.01%) Max nb of predicted sites per peak: 46  (Antp-Flag_S2_peak_399::chr3R:3344720-3345055(.)) Mean nb of predicted sites per peak: 3.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_m1	k-mer sig=78.18; evalue=6.6e-79 acrCACACACACACACaca TGTGTGTGTGTGTGTGYGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 160 (23.15%) Max nb of predicted sites per peak: 58  (Antp-Flag_S2_peak_392::chr3L:21498459-21498763(.)) Mean nb of predicted sites per peak: 6.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m2	k-mer sig=62.49; evalue=3.2e-63 tCtCTCkCTCTCTCTCTCTCtC GAGAGAGAGAGAGAGMGAGAGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 148 (21.42%) Max nb of predicted sites per peak: 56  (Antp-Flag_S2_peak_399::chr3R:3344720-3345055(.)) Mean nb of predicted sites per peak: 7.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m3	k-mer sig=44.65; evalue=2.2e-45 wwGGAAAAATAATww WWATTATTTTTCCWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 112 (16.21%) Max nb of predicted sites per peak: 4  (Antp-Flag_S2_peak_633::chrY:865412-866638(.)) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m4	k-mer sig=41.47; evalue=3.4e-42 wwATAAATAAww WWTTATTTATWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 191 (27.64%) Max nb of predicted sites per peak: 25  (Antp-Flag_S2_peak_332::chr3L:8020118-8021239(.)) Mean nb of predicted sites per peak: 1.76	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m5	k-mer sig=40.28; evalue=5.2e-41 gcGGCAGCAGCGvc GBCGCTGCTGCCGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 121 (17.51%) Max nb of predicted sites per peak: 9  (Antp-Flag_S2_peak_442::chr3R:11372606-11373030(.)) Mean nb of predicted sites per peak: 1.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title AntpF2-few -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.004416_2025-04-13.004416_fDvkkn/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab