RSAT - peak-motifs result

Analysis: AntpF2-common (13/04/2025 01:02)

peak-motifs  -v 1 -title AntpF2-common -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: catacatac (sig=29.90; e-value=1.3e-30) RC: gtatgtatg oligos_6nt_mkv3_m2 assembly: acacaca (sig=22.38; e-value=4.2e-23) RC: tgtgtgt oligos_6nt_mkv3_m3 assembly: aatcgatt (sig=20.02; e-value=9.5e-21) RC: aatcgatt oligos_6nt_mkv3_m4 assembly: gagagagcgaga (sig=18.23; e-value=5.9e-19) RC: tctcgctctctc oligos_6nt_mkv3_m5 assembly: cgcacgcacacac (sig=22.38; e-value=4.2e-23) RC: gtgtgtgcgtgcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: gcacagtgg (sig=14.36; e-value=4.4e-15) RC: ccactgtgc oligos_7nt_mkv4_m2 assembly: acacgcacac (sig=11.38; e-value=4.2e-12) RC: gtgtgcgtgt oligos_7nt_mkv4_m3 assembly: tctctttc (sig=8.44; e-value=3.6e-09) RC: gaaagaga oligos_7nt_mkv4_m4 assembly: gagcgaga (sig=8.30; e-value=5e-09) RC: tctcgctc oligos_7nt_mkv4_m5 assembly: aacaacaac (sig=6.76; e-value=1.7e-07) RC: gttgttgtt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]
dyads	dyads_m1 assembly: gcacacacacaca (sig=147.13; e-value=7.4e-148) RC: tgtgtgtgtgtgc dyads_m2 assembly: tctctctctctcc (sig=130.29; e-value=5.1e-131) RC: ggagagagagaga dyads_m3 assembly: taaaataaataa (sig=102.78; e-value=1.7e-103) RC: ttatttatttta dyads_m4 assembly: ggcagcagcg (sig=102.44; e-value=3.6e-103) RC: cgctgctgcc dyads_m5 assembly: cgccgccg (sig=81.51; e-value=3.1e-82) RC: cggcggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=29.90; evalue=1.3e-30 hacaTACATAcrt AYGTATGTATGTD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 257 (25.50%) Max nb of predicted sites per peak: 9  (Antp-Flag_S1_peak_908::chr2R:13449178-13450290(.)) Mean nb of predicted sites per peak: 2.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=22.38; evalue=4.2e-23 acACACACAca TGTGTGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 278 (27.58%) Max nb of predicted sites per peak: 57  (Antp-Flag_S1_peak_1875::chr3L:21498360-21498831(.)) Mean nb of predicted sites per peak: 5.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=20.02; evalue=9.5e-21 rmaATCGATtkb VMAATCGATTKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 113 (11.21%) Max nb of predicted sites per peak: 8  (Antp-Flag_S1_peak_191::chr2L:5978470-5984062(.)) Mean nb of predicted sites per peak: 2.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=18.23; evalue=5.9e-19 gaGAGAGAGmGAGaGa TCTCTCKCTCTCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 277 (27.48%) Max nb of predicted sites per peak: 53  (Antp-Flag_S1_peak_1916::chr3R:3344640-3345130(.)) Mean nb of predicted sites per peak: 6.70	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=22.38; evalue=4.2e-23 caCrCACrCACACACac GTGTGTGTGYGTGYGTG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 278 (27.58%) Max nb of predicted sites per peak: 58  (Antp-Flag_S1_peak_1875::chr3L:21498360-21498831(.)) Mean nb of predicted sites per peak: 7.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv4_m1	k-mer sig=14.36; evalue=4.4e-15 ssgCACAGTGGvv BBCCACTGTGCSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 195 (19.35%) Max nb of predicted sites per peak: 4  (Antp-Flag_S1_peak_1651::chr3L:11969103-11969753(.)) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv4_m2	k-mer sig=11.38; evalue=4.2e-12 aCACACrCACACac GTGTGTGYGTGTGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 312 (30.95%) Max nb of predicted sites per peak: 57  (Antp-Flag_S1_peak_1875::chr3L:21498360-21498831(.)) Mean nb of predicted sites per peak: 5.79	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv4_m3	k-mer sig=8.44; evalue=3.6e-09 tctCTCTyTCtc GAGARAGAGAGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 273 (27.08%) Max nb of predicted sites per peak: 49  (Antp-Flag_S1_peak_1916::chr3R:3344640-3345130(.)) Mean nb of predicted sites per peak: 4.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv4_m4	k-mer sig=8.30; evalue=5e-09 gaGAGmGAGAga TCTCTCKCTCTC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 280 (27.78%) Max nb of predicted sites per peak: 51  (Antp-Flag_S1_peak_1916::chr3R:3344640-3345130(.)) Mean nb of predicted sites per peak: 4.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv4_m5	k-mer sig=6.76; evalue=1.7e-07 rcAACAACAACaa TTGTTGTTGTTGY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 266 (26.39%) Max nb of predicted sites per peak: 58  (Antp-Flag_S1_peak_202::chr2L:6152542-6152943(.)) Mean nb of predicted sites per peak: 2.91	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_m1	k-mer sig=147.13; evalue=7.4e-148 acrCACACACACACAca TGTGTGTGTGTGTGYGT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 279 (27.68%) Max nb of predicted sites per peak: 58  (Antp-Flag_S1_peak_1875::chr3L:21498360-21498831(.)) Mean nb of predicted sites per peak: 7.58	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m2	k-mer sig=130.29; evalue=5.1e-131 tCtCTCTCTCTCTCyct AGRGAGAGAGAGAGAGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 250 (24.80%) Max nb of predicted sites per peak: 54  (Antp-Flag_S1_peak_1916::chr3R:3344640-3345130(.)) Mean nb of predicted sites per peak: 7.46	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m3	k-mer sig=102.78; evalue=1.7e-103 wwwAAAATAAATAaww WWTTATTTATTTTWWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 386 (38.29%) Max nb of predicted sites per peak: 20  (Antp-Flag_S1_peak_1541::chr3L:8019980-8022777(.)) Mean nb of predicted sites per peak: 2.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_m4	k-mer sig=102.44; evalue=3.6e-103 gcGGCAGCAGCGgc GCCGCTGCTGCCGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 283 (28.08%) Max nb of predicted sites per peak: 17  (Antp-Flag_S1_peak_2815::chrX:764439-765454(.)) Mean nb of predicted sites per peak: 2.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_m5	k-mer sig=81.51; evalue=3.1e-82 gsCGCCGCCGcc GGCGGCGGCGSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 241 (23.91%) Max nb of predicted sites per peak: 10  (Antp-Flag_S1_peak_2815::chrX:764439-765454(.)) Mean nb of predicted sites per peak: 1.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title AntpF2-common -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.010112_2025-04-13.010112_koGknt/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab