/var/www/html/rsat/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title VENE_df2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	159
	Sum of sequence lengths      	66485
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	418
	Possible positions           	66326
 Oligonucleotide statistics:
	Total occurrences    	63238
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	66326
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	19	378
	2	-24	[-479,-460]	-469.5	21	414
	3	-23	[-459,-440]	-449.5	23	444
	4	-22	[-439,-420]	-429.5	24	475
	5	-21	[-419,-400]	-409.5	25	486
	6	-20	[-399,-380]	-389.5	25	500
	7	-19	[-379,-360]	-369.5	26	510
	8	-18	[-359,-340]	-349.5	27	540
	9	-17	[-339,-320]	-329.5	29	552
	10	-16	[-319,-300]	-309.5	30	592
	11	-15	[-299,-280]	-289.5	33	641
	12	-14	[-279,-260]	-269.5	35	685
	13	-13	[-259,-240]	-249.5	41	774
	14	-12	[-239,-220]	-229.5	46	877
	15	-11	[-219,-200]	-209.5	53	977
	16	-10	[-199,-180]	-189.5	59	1121
	17	-9	[-179,-160]	-169.5	75	1311
	18	-8	[-159,-140]	-149.5	90	1692
	19	-7	[-139,-120]	-129.5	111	1971
	20	-6	[-119,-100]	-109.5	144	2534
	21	-5	[-99,-80]	-89.5	159	3118
	22	-4	[-79,-60]	-69.5	159	3180
	23	-3	[-59,-40]	-49.5	159	3180
	24	-2	[-39,-20]	-29.5	159	3180
	25	-1	[-19,0]	-9.5	159	3180
	26	0	[1,20]	10.5	159	3180
	27	1	[21,40]	30.5	159	3180
	28	2	[41,60]	50.5	159	3180
	29	3	[61,80]	70.5	159	3180
	30	4	[81,100]	90.5	159	3085
	31	5	[101,120]	110.5	139	2472
	32	6	[121,140]	130.5	107	1930
	33	7	[141,160]	150.5	89	1662
	34	8	[161,180]	170.5	72	1282
	35	9	[181,200]	190.5	59	1111
	36	10	[201,220]	210.5	53	959
	37	11	[221,240]	230.5	45	866
	38	12	[241,260]	250.5	41	763
	39	13	[261,280]	270.5	35	680
	40	14	[281,300]	290.5	33	635
	41	15	[301,320]	310.5	30	589
	42	16	[321,340]	330.5	29	550
	43	17	[341,360]	350.5	27	538
	44	18	[361,380]	370.5	26	507
	45	19	[381,400]	390.5	25	500
	46	20	[401,420]	410.5	25	483
	47	21	[421,440]	430.5	24	473
	48	22	[441,460]	450.5	23	441
	49	23	[461,480]	470.5	21	409
	50	24	[481,500]	490.5	19	359

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 2699 169.9 49 3.1e-15 4.9e-14 13.31 1 14 14 7 26 19 23 15 19 17 28 20 24 13 36 23 39 61 71 74 96 125 107 137 189 178 193 154 160 138 91 99 63 53 43 35 31 24 31 29 23 18 19 17 19 11 23 12 14 11 13
aa aa 2719 139.1 49 1.5e-10 2.4e-09 8.63 2 16 16 12 17 12 13 19 16 18 18 26 13 33 33 33 36 37 51 74 87 121 112 151 176 182 182 172 137 144 122 102 56 67 38 41 39 27 26 27 29 28 25 26 22 14 13 16 14 18 12
cg cg 6966 105.2 49 5.6e-06 8.9e-05 4.05 3 31 35 38 32 41 48 46 55 58 71 74 83 83 97 111 123 167 193 241 299 340 367 333 300 314 275 303 332 359 367 273 229 187 147 108 100 83 87 78 59 38 49 47 37 49 45 34 37 30 33
gg gg 5776 102.9 49 1.1e-05 0.00017 3.77 4 38 31 34 39 45 31 48 48 48 45 50 58 53 80 96 124 130 178 194 279 317 292 276 262 277 272 288 263 267 263 192 161 139 128 91 92 70 58 52 38 38 36 40 25 32 26 28 34 42 28
at at 2530 97.7 49 4.4e-05 0.00071 3.15 5 13 16 11 16 14 18 17 19 16 29 25 20 23 30 34 34 47 56 68 82 108 131 143 149 157 170 144 137 129 105 84 70 64 45 32 23 22 24 18 19 18 23 16 28 15 15 19 7 15 12
cc cc 6268 80.9 49 2.8e-03 0.044 1.36 6 42 40 57 44 52 49 34 48 45 52 59 64 99 83 101 95 108 174 186 235 313 279 281 293 299 260 291 284 325 285 261 213 154 123 111 100 85 82 34 63 63 53 57 46 56 37 55 45 34 19
tg tg 3375 68.2 49 3.6e-02 0.58 0.24 7 11 14 13 27 14 19 22 19 25 28 27 36 29 42 51 67 59 85 93 151 176 178 202 182 151 183 168 159 169 165 121 97 88 57 58 46 49 33 28 24 27 26 19 28 18 23 18 15 20 15
ta ta 1302 67.5 49 4.1e-02 0.65 0.19 8 9 8 12 17 10 10 16 13 9 14 16 18 10 18 19 18 20 24 40 33 61 67 50 63 93 77 80 60 53 45 46 34 31 18 23 18 19 11 12 15 10 11 12 10 11 10 9 5 5 9
gc gc 5753 63.3 49 8.2e-02 1.3 -0.12 9 27 31 39 40 32 41 42 44 45 61 70 72 68 70 95 113 124 161 192 254 268 297 272 265 233 239 248 260 264 293 217 185 156 116 105 93 76 69 60 47 45 49 37 37 37 37 35 39 27 26
gt gt 3397 61.9 49 1.0e-01 1.6 -0.22 10 10 18 14 21 26 23 22 24 28 22 26 34 34 44 54 57 68 92 110 164 180 164 191 151 164 152 155 184 181 167 125 94 84 64 51 48 52 35 38 36 22 22 24 19 21 21 16 20 8 17
ga ga 4353 54.7 49 2.7e-01 4.3 -0.63 11 18 18 20 14 32 25 34 39 33 34 34 37 52 56 53 77 93 117 140 168 202 239 227 209 203 213 213 204 240 218 173 128 117 72 81 54 41 46 45 39 32 34 31 29 30 34 30 23 31 21
ca ca 3590 48.0 49 5.1e-01 8.2 -0.91 12 19 27 26 27 25 29 25 26 32 29 38 32 56 45 52 43 69 88 98 117 160 156 183 205 174 178 190 185 149 165 133 105 93 74 58 52 48 31 33 29 37 31 28 39 25 25 31 33 19 18
ct ct 3278 48.0 49 5.1e-01 8.2 -0.91 13 17 19 29 31 24 24 26 18 36 31 33 44 34 48 57 74 57 77 81 122 150 164 145 141 144 169 147 161 135 154 128 93 84 67 65 46 51 32 32 28 33 27 27 25 32 27 28 16 24 21
ag ag 3163 42.9 49 7.2e-01 12 -1.06 14 14 18 20 20 29 22 32 33 23 21 25 26 45 31 41 58 60 87 108 125 142 162 140 141 138 149 154 158 144 150 112 88 77 65 59 53 40 32 37 35 39 26 28 24 19 28 21 32 18 14
ac ac 3552 40.4 49 8.0e-01 13 -1.11 15 20 19 26 24 20 27 26 28 31 29 35 42 51 61 45 50 70 87 104 112 176 172 168 182 171 159 182 167 147 188 144 115 101 59 70 47 44 35 32 28 28 22 34 26 31 27 25 23 24 18
tc tc 4517 33.0 49 9.6e-01 15 -1.19 16 19 30 26 27 37 38 26 31 45 40 43 42 51 63 72 73 101 111 129 176 199 216 221 202 222 229 211 246 236 207 173 129 107 106 63 57 56 49 45 43 35 37 35 33 39 32 36 24 23 26 
 Host name	rsat
 Job started	2025-04-13.171458
 Job done	2025-04-13.171458
 Seconds	0.45
	user	0.45
	system	0.02
	cuser	0
;	csystem	0