RSAT - peak-motifs result

Analysis: VENE_df2 (13/04/2025 17:15)

peak-motifs  -v 1 -title VENE_df2 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: aggaattcct (sig=8.99; e-value=1e-09) RC: aggaattcct oligos_6nt_mkv2_m2 assembly: gcagcagc (sig=5.10; e-value=7.9e-06) RC: gctgctgc oligos_6nt_mkv2_m3 assembly: gtcgtcgagga (sig=2.51; e-value=0.0031) RC: tcctcgacgac oligos_6nt_mkv2_m4 assembly: cgccgcc (sig=2.30; e-value=0.005) RC: ggcggcg oligos_6nt_mkv2_m5 assembly: cacccc (sig=2.06; e-value=0.0087) RC: ggggtg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ccgccgcc (sig=4.99; e-value=1e-05) RC: ggcggcgg oligos_7nt_mkv2_m2 assembly: aggaattcct (sig=4.26; e-value=5.5e-05) RC: aggaattcct oligos_7nt_mkv2_m3 assembly: cgagatc (sig=1.82; e-value=0.015) RC: gatctcg oligos_7nt_mkv2_m4 assembly: cgtcgaggag (sig=1.68; e-value=0.021) RC: ctcctcgacg oligos_7nt_mkv2_m5 assembly: cgccacc (sig=1.56; e-value=0.028) RC: ggtggcg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=8.99; evalue=1e-09 cvagGAATTCctbg CVAGGAATTCCTBG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (25.79%) Max nb of predicted sites per peak: 6  (VENE_Lsr2FLAG_merge_peak_122) Mean nb of predicted sites per peak: 2.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=5.10; evalue=7.9e-06 vwgCAGCAGcwg CWGCTGCTGCWB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 24 (15.09%) Max nb of predicted sites per peak: 6  (VENE_Lsr2FLAG_merge_peak_71) Mean nb of predicted sites per peak: 1.54	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=2.51; evalue=0.0031 asgTCGTCGAgGAss SSTCCTCGACGACST	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 36 (22.64%) Max nb of predicted sites per peak: 3  (VENE_Lsr2FLAG_merge_peak_94) Mean nb of predicted sites per peak: 1.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=2.30; evalue=0.005 gyCGCCGCCry RYGGCGGCGRC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 48 (30.19%) Max nb of predicted sites per peak: 6  (VENE_Lsr2FLAG_merge_peak_155) Mean nb of predicted sites per peak: 1.65	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=2.06; evalue=0.0087 myCACCCCgh DCGGGGTGRK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 44 (27.67%) Max nb of predicted sites per peak: 4  (VENE_Lsr2FLAG_merge_peak_76) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=4.99; evalue=1e-05 cgcCGCCGCCrs SYGGCGGCGGCG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (15.72%) Max nb of predicted sites per peak: 5  (VENE_Lsr2FLAG_merge_peak_155) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=4.26; evalue=5.5e-05 ssAgGAATTCcTss SSAGGAATTCCTSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 31 (19.50%) Max nb of predicted sites per peak: 6  (VENE_Lsr2FLAG_merge_peak_17) Mean nb of predicted sites per peak: 2.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=1.82; evalue=0.015 gvcGAGATCar YTGATCTCGBC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (13.84%) Max nb of predicted sites per peak: 2  (VENE_Lsr2FLAG_merge_peak_65) Mean nb of predicted sites per peak: 1.23	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=1.68; evalue=0.021 gtcgTCGAggAgsw WSCTCCTCGACGAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 36 (22.64%) Max nb of predicted sites per peak: 3  (VENE_Lsr2FLAG_merge_peak_64) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.56; evalue=0.028 tyCGCCACCwm KWGGTGGCGRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 35 (22.01%) Max nb of predicted sites per peak: 3  (VENE_Lsr2FLAG_merge_peak_5) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title VENE_df2 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2025/04/13/peak-motifs.2025-04-13.171454_2025-04-13.171454_sCyCBp/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab