position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title MYCO_S_df2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 212 Sum of sequence lengths 121189 Min sequence length 0 Max sequence length 1000 Average sequence length 571 Possible positions 121189 Oligonucleotide statistics: Total occurrences 121104 Position interval parameters: Position interval 20 Number of windows 50 Total positions 121189 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 52 1013 2 -24 [-479,-460] -469.5 54 1048 3 -23 [-459,-440] -449.5 57 1105 4 -22 [-439,-420] -429.5 62 1194 5 -21 [-419,-400] -409.5 68 1289 6 -20 [-399,-380] -389.5 70 1382 7 -19 [-379,-360] -369.5 74 1468 8 -18 [-359,-340] -349.5 79 1529 9 -17 [-339,-320] -329.5 83 1610 10 -16 [-319,-300] -309.5 84 1669 11 -15 [-299,-280] -289.5 93 1782 12 -14 [-279,-260] -269.5 98 1930 13 -13 [-259,-240] -249.5 107 2018 14 -12 [-239,-220] -229.5 115 2222 15 -11 [-219,-200] -209.5 124 2418 16 -10 [-199,-180] -189.5 132 2575 17 -9 [-179,-160] -169.5 145 2763 18 -8 [-159,-140] -149.5 158 3019 19 -7 [-139,-120] -129.5 189 3494 20 -6 [-119,-100] -109.5 206 3967 21 -5 [-99,-80] -89.5 212 4222 22 -4 [-79,-60] -69.5 212 4240 23 -3 [-59,-40] -49.5 212 4240 24 -2 [-39,-20] -29.5 212 4240 25 -1 [-19,0] -9.5 212 4240 26 0 [1,20] 10.5 212 4240 27 1 [21,40] 30.5 212 4240 28 2 [41,60] 50.5 212 4240 29 3 [61,80] 70.5 212 4240 30 4 [81,100] 90.5 212 4214 31 5 [101,120] 110.5 206 3946 32 6 [121,140] 130.5 187 3464 33 7 [141,160] 150.5 155 3005 34 8 [161,180] 170.5 145 2752 35 9 [181,200] 190.5 132 2568 36 10 [201,220] 210.5 123 2413 37 11 [221,240] 230.5 115 2212 38 12 [241,260] 250.5 105 2008 39 13 [261,280] 270.5 98 1926 40 14 [281,300] 290.5 93 1775 41 15 [301,320] 310.5 84 1668 42 16 [321,340] 330.5 83 1607 43 17 [341,360] 350.5 78 1520 44 18 [361,380] 370.5 74 1464 45 19 [381,400] 390.5 70 1380 46 20 [401,420] 410.5 68 1286 47 21 [421,440] 430.5 62 1188 48 22 [441,460] 450.5 57 1101 49 23 [461,480] 470.5 54 1044 50 24 [481,500] 490.5 51 1011 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 26412 | 76.3 | 49 | 7.5e-03 | 0.03 | 1.52 | 1 | 219 | 215 | 248 | 231 | 261 | 300 | 318 | 300 | 333 | 349 | 348 | 420 | 437 | 451 | 512 | 527 | 604 | 686 | 747 | 866 | 910 | 935 | 1017 | 1028 | 971 | 968 | 978 | 980 | 955 | 906 | 875 | 769 | 628 | 595 | 562 | 504 | 506 | 418 | 387 | 361 | 339 | 350 | 295 | 289 | 312 | 264 | 279 | 232 | 212 | 215 |
| a | a | 26233 | 75.5 | 49 | 8.9e-03 | 0.036 | 1.45 | 2 | 219 | 223 | 226 | 262 | 292 | 302 | 287 | 326 | 343 | 334 | 392 | 390 | 428 | 484 | 519 | 552 | 558 | 627 | 745 | 888 | 949 | 930 | 928 | 994 | 1020 | 992 | 973 | 917 | 939 | 912 | 818 | 730 | 618 | 596 | 562 | 572 | 439 | 431 | 393 | 350 | 355 | 362 | 276 | 307 | 287 | 281 | 221 | 225 | 233 | 226 |
| c | c | 34261 | 71.4 | 49 | 2.0e-02 | 0.08 | 1.10 | 3 | 293 | 303 | 318 | 381 | 359 | 395 | 451 | 464 | 471 | 492 | 503 | 546 | 597 | 629 | 715 | 745 | 795 | 873 | 1020 | 1105 | 1215 | 1199 | 1146 | 1083 | 1134 | 1140 | 1103 | 1190 | 1144 | 1184 | 1102 | 967 | 885 | 779 | 728 | 709 | 608 | 550 | 599 | 537 | 485 | 412 | 459 | 441 | 381 | 380 | 334 | 336 | 292 | 284 |
| g | g | 34198 | 61.7 | 49 | 1.0e-01 | 0.42 | 0.38 | 4 | 282 | 307 | 313 | 320 | 377 | 385 | 412 | 439 | 463 | 494 | 539 | 574 | 556 | 658 | 672 | 751 | 806 | 833 | 982 | 1108 | 1130 | 1156 | 1146 | 1135 | 1115 | 1134 | 1166 | 1135 | 1202 | 1212 | 1151 | 998 | 874 | 782 | 716 | 628 | 659 | 609 | 547 | 527 | 489 | 483 | 490 | 427 | 400 | 361 | 354 | 308 | 307 | 286 |
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