/var/www/html/rsat/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title MYCO_S_df2 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/04/13/peak-motifs.2025-04-13.172640_2025-04-13.172640_Wu3iyl/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	212
	Sum of sequence lengths      	121189
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	571
	Possible positions           	120977
 Oligonucleotide statistics:
	Total occurrences    	120890
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	120977
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	52	1013
	2	-24	[-479,-460]	-469.5	54	1048
	3	-23	[-459,-440]	-449.5	57	1105
	4	-22	[-439,-420]	-429.5	62	1194
	5	-21	[-419,-400]	-409.5	68	1289
	6	-20	[-399,-380]	-389.5	70	1382
	7	-19	[-379,-360]	-369.5	74	1468
	8	-18	[-359,-340]	-349.5	79	1529
	9	-17	[-339,-320]	-329.5	83	1610
	10	-16	[-319,-300]	-309.5	84	1669
	11	-15	[-299,-280]	-289.5	93	1782
	12	-14	[-279,-260]	-269.5	98	1930
	13	-13	[-259,-240]	-249.5	107	2018
	14	-12	[-239,-220]	-229.5	115	2222
	15	-11	[-219,-200]	-209.5	124	2418
	16	-10	[-199,-180]	-189.5	132	2575
	17	-9	[-179,-160]	-169.5	145	2763
	18	-8	[-159,-140]	-149.5	158	3019
	19	-7	[-139,-120]	-129.5	189	3494
	20	-6	[-119,-100]	-109.5	206	3967
	21	-5	[-99,-80]	-89.5	212	4222
	22	-4	[-79,-60]	-69.5	212	4240
	23	-3	[-59,-40]	-49.5	212	4240
	24	-2	[-39,-20]	-29.5	212	4240
	25	-1	[-19,0]	-9.5	212	4240
	26	0	[1,20]	10.5	212	4240
	27	1	[21,40]	30.5	212	4240
	28	2	[41,60]	50.5	212	4240
	29	3	[61,80]	70.5	212	4240
	30	4	[81,100]	90.5	212	4208
	31	5	[101,120]	110.5	204	3927
	32	6	[121,140]	130.5	187	3432
	33	7	[141,160]	150.5	155	2995
	34	8	[161,180]	170.5	142	2739
	35	9	[181,200]	190.5	132	2559
	36	10	[201,220]	210.5	123	2405
	37	11	[221,240]	230.5	115	2202
	38	12	[241,260]	250.5	104	2001
	39	13	[261,280]	270.5	98	1921
	40	14	[281,300]	290.5	93	1766
	41	15	[301,320]	310.5	84	1667
	42	16	[321,340]	330.5	83	1602
	43	17	[341,360]	350.5	78	1516
	44	18	[361,380]	370.5	74	1460
	45	19	[381,400]	390.5	70	1378
	46	20	[401,420]	410.5	68	1280
	47	21	[421,440]	430.5	62	1183
	48	22	[441,460]	450.5	57	1098
	49	23	[461,480]	470.5	54	1041
	50	24	[481,500]	490.5	51	960

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 6181 135.2 49 5.3e-10 8.5e-09 8.07 1 50 40 53 63 69 61 62 72 78 74 100 75 109 110 121 113 118 137 171 250 228 209 230 264 292 232 253 217 237 209 199 173 142 137 128 156 90 98 74 72 88 90 45 76 61 72 42 40 50 51
tt tt 6279 108.8 49 2.0e-06 3.2e-05 4.50 2 46 49 60 47 53 69 74 49 77 73 91 83 104 103 106 133 138 180 162 214 210 226 253 255 263 237 257 250 255 208 209 202 141 128 146 133 127 92 86 75 83 86 59 49 68 65 66 42 55 42
ta ta 3958 95.9 49 7.0e-05 0.0011 2.95 3 34 31 35 25 39 51 39 53 44 50 41 67 55 68 68 73 79 100 110 118 145 137 171 174 162 186 175 158 137 134 120 109 101 85 80 83 67 64 58 50 39 42 32 52 52 36 28 41 27 33
gg gg 8602 90.0 49 3.2e-04 0.0051 2.29 4 75 75 75 70 102 98 100 113 128 127 147 147 131 179 157 191 207 204 240 271 267 303 278 273 267 254 301 270 307 311 307 269 228 202 171 139 170 167 121 145 132 128 151 115 92 91 96 68 74 68
cc cc 8665 73.7 49 1.3e-02 0.2 0.69 5 71 80 85 99 79 99 119 125 116 135 127 140 160 161 174 190 204 228 264 260 313 308 277 253 294 294 257 297 291 294 286 226 231 197 173 177 155 125 168 146 128 84 129 126 96 96 91 95 70 72
at at 6816 72.7 49 1.6e-02 0.25 0.60 6 53 50 58 64 72 84 67 84 84 75 100 105 103 119 133 138 158 184 189 226 242 252 271 273 279 294 250 254 247 232 210 196 143 154 157 129 113 114 90 86 75 93 66 69 81 57 69 56 55 63
gc gc 10359 53.1 49 3.2e-01 5.1 -0.71 7 76 98 99 106 113 111 130 145 144 146 167 185 168 189 208 223 264 260 312 345 342 339 340 307 347 336 340 350 333 381 346 306 281 214 214 213 195 182 186 172 145 127 151 128 114 107 92 106 96 80
cg cg 11358 53.0 49 3.2e-01 5.1 -0.71 8 101 87 105 122 130 137 152 147 155 161 185 180 191 226 255 249 266 299 331 379 389 378 357 336 363 362 348 398 388 394 355 329 302 265 246 246 200 202 196 170 161 150 155 147 139 127 104 103 105 85
tg tg 8016 50.8 49 4.0e-01 6.4 -0.81 9 61 69 72 73 77 78 98 87 104 105 113 150 131 138 148 161 192 214 238 269 270 247 309 301 270 278 303 269 292 288 283 231 192 180 165 130 167 129 135 117 104 108 104 88 107 65 96 74 67 69
ag ag 6167 46.7 49 5.7e-01 9.1 -0.96 10 54 69 56 58 70 72 63 88 90 95 90 100 102 114 116 141 143 130 163 180 210 234 198 208 231 227 232 190 211 236 197 154 147 143 111 126 127 98 101 87 92 91 86 73 62 70 56 59 67 49
ct ct 6223 44.2 49 6.7e-01 11 -1.03 11 61 69 59 66 64 85 87 83 91 91 80 106 108 92 129 119 143 146 191 202 220 211 235 233 190 198 226 209 194 204 211 191 155 135 129 114 115 99 107 98 80 76 78 81 75 61 69 67 46 44
tc tc 8127 43.8 49 6.9e-01 11 -1.04 12 78 66 81 86 92 102 107 111 108 121 103 120 147 142 190 160 195 192 237 265 285 325 284 298 276 267 243 303 271 276 259 222 194 199 170 156 144 132 108 117 113 114 100 99 85 98 89 73 61 63
ga ga 8121 41.4 49 7.7e-01 12 -1.09 13 79 80 71 90 87 115 94 95 109 116 131 123 139 153 172 189 171 195 222 259 286 271 260 291 278 294 267 262 305 263 252 230 188 181 186 154 150 143 133 107 112 132 101 91 103 85 77 74 84 71
gt gt 7050 40.4 49 8.1e-01 13 -1.11 14 52 54 68 54 75 61 88 86 82 105 94 119 118 137 135 148 164 174 208 233 235 243 268 264 223 249 258 253 257 255 241 182 171 181 141 121 141 113 105 103 100 93 85 92 90 75 88 60 53 55
ac ac 7034 39.7 49 8.2e-01 13 -1.12 15 62 64 59 77 81 85 95 82 91 90 102 110 114 141 149 160 139 176 222 232 269 235 229 249 218 239 238 256 244 235 209 202 186 159 166 158 105 120 127 104 99 88 78 88 83 81 54 70 61 53
ca ca 7934 30.5 49 9.8e-01 16 -1.20 16 60 67 69 94 86 74 93 109 109 105 111 120 138 150 157 187 182 200 234 264 292 302 277 261 287 286 272 286 271 288 243 210 193 179 176 170 136 123 126 117 116 100 96 86 70 94 66 70 70 62 
 Host name	rsat
 Job started	2025-04-13.172644
 Job done	2025-04-13.172644
 Seconds	0.75
	user	0.75
	system	0.01
	cuser	0
;	csystem	0